prot_Ecto-sp13_S_contig57121.16105.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig57121.16105.1
Unique Nameprot_Ecto-sp13_S_contig57121.16105.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length76
Homology
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: D7FQB6_ECTSI (Ribosomal_S17_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB6_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 6.310e-43
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0
Query:    1 MTQGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            + + KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR
Sbjct:   56 VAKSKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 130          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: A0A835Z9X9_9STRA (Ribosomal protein S17-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9X9_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.580e-35
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0
Query:    5 KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            KGMRF KN+GLGFKTPK A  GTYVDKKCPFTG+VSIRGRILKGLV+SAGKM NT VIRRDYLH+V+KYRR
Sbjct:   33 KGMRFYKNIGLGFKTPKLAISGTYVDKKCPFTGNVSIRGRILKGLVLSAGKMKNTCVIRRDYLHYVTKYRR 103          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: A0A7S2XWS0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWS0_9STRA)

HSP 1 Score: 122 bits (307), Expect = 5.370e-34
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = 0
Query:    5 KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            KGMRF KN+GLGFKTPK A EGTYVDKKCPFTG+VSIRGRILKGLVIS  KM NTI++RRDYLH++SKYRR
Sbjct:   35 KGMRFYKNIGLGFKTPKLAIEGTYVDKKCPFTGNVSIRGRILKGLVIST-KMKNTIIVRRDYLHYISKYRR 104          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: A0A7S4UCS4_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UCS4_GUITH)

HSP 1 Score: 115 bits (287), Expect = 1.510e-31
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 0
Query:    5 KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            K MRFVKNVGLG KTP  A E  YVDKKCPFTG+VSIRGRILKG VISAGKM  TI++RRDYLH++ KYRR
Sbjct:   31 KPMRFVKNVGLGIKTPDAAIENPYVDKKCPFTGNVSIRGRILKGQVISAGKMKRTIIVRRDYLHYIRKYRR 101          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: A0A7S4WCA2_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4WCA2_9DINO)

HSP 1 Score: 115 bits (288), Expect = 4.080e-31
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 0
Query:    5 KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            K MR+ KNVGLG KTPK A EGTYVDKKCPFTGDV+IRGRILKGLVIS  KMT TI++RRDYLH++ KYRR
Sbjct:   35 KPMRWTKNVGLGIKTPKNAVEGTYVDKKCPFTGDVAIRGRILKGLVIST-KMTRTIIVRRDYLHYIRKYRR 104          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: A0A7R9U3I9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3I9_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.240e-31
Identity = 54/71 (76.06%), Postives = 64/71 (90.14%), Query Frame = 0
Query:    5 KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            KGMR+VKN+GLGFKTP+ A EG YVD+KCPFTG+VSIRG+ILKG+VIS  KMT T+V+RRDYLHFV KY+R
Sbjct:   56 KGMRYVKNIGLGFKTPQRAIEGNYVDRKCPFTGNVSIRGKILKGIVIS-NKMTRTVVVRRDYLHFVRKYKR 125          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: A0A6S8U5Q0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8U5Q0_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.860e-30
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 0
Query:    5 KGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYR 74
            KG+R+V+NVGLGFKTPK A EG+YVDKKCPFTG+VSIRGRILKG+VIS  KMT T+VIRRDYL++  KYR
Sbjct:   35 KGLRYVRNVGLGFKTPKLALEGSYVDKKCPFTGNVSIRGRILKGMVIST-KMTRTVVIRRDYLNWCGKYR 103          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: A0A5A8EL75_CAFRO (Ribosomal_S17_N domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EL75_CAFRO)

HSP 1 Score: 113 bits (283), Expect = 2.150e-30
Identity = 54/75 (72.00%), Postives = 65/75 (86.67%), Query Frame = 0
Query:    1 MTQGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            +T+G+G R+VK++GL  KTPK A EG Y+DKKCPFTG+VSIRGRILKG+VIS  KM  TIVIRRDYLH++SKYRR
Sbjct:   28 VTKGRGQRWVKSIGLAVKTPKAAIEGNYIDKKCPFTGNVSIRGRILKGVVIST-KMNRTIVIRRDYLHYISKYRR 101          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: L8HL46_ACACA (Ribosomal protein S17, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HL46_ACACA)

HSP 1 Score: 113 bits (282), Expect = 2.970e-30
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0
Query:    3 QGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            +GKG+RF KN+GLGFKTPK A EG Y+DKKCPFTG+VSIRGRIL+G+V+S  KM  TI++RRDYLH+V KY R
Sbjct:   30 KGKGVRFTKNIGLGFKTPKEAIEGKYIDKKCPFTGNVSIRGRILRGVVVST-KMKRTIIVRRDYLHYVPKYNR 101          
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Match: A0A7S2S9B4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S9B4_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.960e-30
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 0
Query:    3 QGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLVISAGKMTNTIVIRRDYLHFVSKYRR 75
            +GKG RF KNVGLGFKTPK A EG +VDKKCPFTG+VSIRGR++K +VIS  KM NT+++RRDYL FV KYRR
Sbjct:   34 RGKGFRFYKNVGLGFKTPKKAIEGNFVDKKCPFTGNVSIRGRVMKAMVIST-KMKNTVIVRRDYLRFVKKYRR 105          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57121.16105.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQB6_ECTSI6.310e-4394.67Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
A0A835Z9X9_9STRA1.580e-3584.51Ribosomal protein S17-domain-containing protein n=... [more]
A0A7S2XWS0_9STRA5.370e-3483.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4UCS4_GUITH1.510e-3177.46Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
A0A7S4WCA2_9DINO4.080e-3178.87Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7R9U3I9_9STRA7.240e-3176.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6S8U5Q0_9STRA1.860e-3077.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5A8EL75_CAFRO2.150e-3072.00Ribosomal_S17_N domain-containing protein n=1 Tax=... [more]
L8HL46_ACACA2.970e-3071.23Ribosomal protein S17, putative n=1 Tax=Acanthamoe... [more]
A0A7S2S9B4_9STRA4.960e-3072.60Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR03244040S ribosomal protein S11, N-terminalPFAMPF16205Ribosomal_S17_Ncoord: 4..46
e-value: 6.4E-25
score: 87.3
NoneNo IPR availableGENE3D2.40.50.1000coord: 1..75
e-value: 1.2E-32
score: 114.7
NoneNo IPR availablePANTHERPTHR10744:SF940S RIBOSOMAL PROTEIN S11coord: 4..75
NoneNo IPR availablePRODOMPD001295coord: 44..75
e-value: 2.0E-5
score: 108.0
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 4..75
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 42..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57121contigEcto-sp13_S_contig57121:67..864 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57121.16105.1mRNA_Ecto-sp13_S_contig57121.16105.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig57121 37..864 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig57121.16105.1 ID=prot_Ecto-sp13_S_contig57121.16105.1|Name=mRNA_Ecto-sp13_S_contig57121.16105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MTQGKGMRFVKNVGLGFKTPKTAREGTYVDKKCPFTGDVSIRGRILKGLV
ISAGKMTNTIVIRRDYLHFVSKYRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032440Ribosomal_S11_N
IPR000266Ribosomal_S17/S11
IPR012340NA-bd_OB-fold