prot_Ecto-sp13_S_contig5601.15931.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5601.15931.1
Unique Nameprot_Ecto-sp13_S_contig5601.15931.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length430
Homology
BLAST of mRNA_Ecto-sp13_S_contig5601.15931.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 526 bits (1356), Expect = 2.220e-178
Identity = 371/430 (86.28%), Postives = 384/430 (89.30%), Query Frame = 0
Query:    1 MFPHKGGVGRAGGXXXXXXXXXXXXGNCGVGCSHGFSPMRSRGVGHSTHSPSAGGGGVPYGFNGGRHGEHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSAGKCTSRGTAPCDGHFSSLAQSSAASXXXXG-HPGYASHTRSHSQPISHGSXXXXXXXXXXYGHHGGSPQGNFDHHHSGAAVGTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGGPPAMHMPPMPRERHGRAEPRDFPAGASGIGGSSPSFGEYDRSSQSESHLHSPYALPEWGYDDAGGSGAGRAVGGAMATAHGVVRSQSPPPMVRSRNGGGAPRPPSASPRAYDGHYSSTRFNGRGGFDGFSVAGIGGASGGVATRXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDDMGKDDVAYSRDRRGGGSRGPASRLP 429
            MFPHKGG    G XXXXXXXXXXX G CGVGCSHGFSPMRSRG GHS H PSAGGGGVPYGF GGRHGEHHNQPMVCVVVPAQRAAALG APHPPHG HS GKCTSRGTAPCDGHFSSLAQS+AASXXXX  HPGYASHTRS+SQP+SHG XXXXXXXXXX           F     GAA GTPHHL V+PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYG PPAMHMPPMPRER GRAEPRD+PAGASG  GSSPSFGEY+RSSQSESHLHSP+ALPEWGYDDAGGSGAGRAVGG+MATA GV RSQSPPPMVRSR GGGAPRPPSASPRAYDGHYSSTR+NGRGGF+ FSVAG+GGASGGVATR  XXXXXXXXXXXXXXXXXXXXXXXXXAVDDMG+DD+AYSRD RGGGSRGPASRLP
Sbjct:  365 MFPHKGG----GXXXXXXXXXXXXAGACGVGCSHGFSPMRSRGAGHSMHGPSAGGGGVPYGFGGGRHGEHHNQPMVCVVVPAQRAAALGFAPHPPHGFHSTGKCTSRGTAPCDGHFSSLAQSNAASXXXXXXHPGYASHTRSNSQPMSHGXXXXXXXXXXXXXXXXXXXHXXFXXXXXGAASGTPHHLLVNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGAPPAMHMPPMPRERQGRAEPRDYPAGASGSSGSSPSFGEYERSSQSESHLHSPHALPEWGYDDAGGSGAGRAVGGSMATALGVTRSQSPPPMVRSRIGGGAPRPPSASPRAYDGHYSSTRYNGRGGFNCFSVAGMGGASGGVATRRSXXXXXXXXXXXXXXXXXXXXXXXXXAVDDMGRDDMAYSRDCRGGGSRGPASRLP 790          
BLAST of mRNA_Ecto-sp13_S_contig5601.15931.1 vs. uniprot
Match: D7FM18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM18_ECTSI)

HSP 1 Score: 512 bits (1319), Expect = 9.010e-178
Identity = 370/442 (83.71%), Postives = 378/442 (85.52%), Query Frame = 0
Query:    1 MFPHKGGVGRAGGXXXXXXXXXXXXGNCGVGCSHGFSPMRSRGVGHSTHSPSAGGGGVPYGFNGGRHGEHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSAGKCTSRGTAPCDGHFSSLAQSSAASXXXXG-----HPGYASHTRSHSQPISHGSXXXXXXXXXXYGHHGGSPQGNFDHHHSGAAVGTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGGPPAMHMPPMPRERHGRAEPRDFPAGASGIGGS------SPSFGEYDRSSQSESHLHSPYALPEWGYDDAGGSGAGRAVGGAMATAHGVVRSQSPPPMVRSRNGGGAPRPPSASPRAYDGHYSSTRFNGRGGFDGFSVAGIGGASGGVATRXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDDMGKDDVAYSRDRRGGG---SRGPASRL 428
            MFPHKGG G     XXXXXXXXXX G CGVGCS+GFSPMRSRG GHS H PSAGGGGVPYG+ GGRHGEHHNQPMVCVVVPAQRAAALGLAPHPPHGLHS GKCTSRGTAPCDGHFSSLAQSS   XXXX      HPGYASHTRSHSQPISHG XXXXXXXXX YGHHGGSP GNFDH     A GTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RSYGGPPAMHMPPMPRER GRAEPRD+P+GASG          SPSFGEY+RSSQSESHLHS YALPEWGYDDAGGSGAGRA GGAMATAHGVVRSQSPPPMVRSRNGGGAPRPPSASPRAYDGHYSSTR+NGRGG +GFSVAGIGGASGGVATRXXXXXXXXXXXXXXXXXXXXXXXXXXX          AYSRD R      S GPASR+
Sbjct:    1 MFPHKGGGGXX---XXXXXXXXXXAGACGVGCSNGFSPMRSRGAGHSIHGPSAGGGGVPYGYGGGRHGEHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSTGKCTSRGTAPCDGHFSSLAQSSXXXXXXXXXXXXXHPGYASHTRSHSQPISHGXXXXXXXXXX-YGHHGGSPHGNFDHXXXXXAAGTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSYGGPPAMHMPPMPRERQGRAEPRDYPSGASGXXXXXXXXXXSPSFGEYERSSQSESHLHSAYALPEWGYDDAGGSGAGRAGGGAMATAHGVVRSQSPPPMVRSRNGGGAPRPPSASPRAYDGHYSSTRYNGRGGVEGFSVAGIGGASGGVATRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAYSRDCRXXXXXXSHGPASRV 438          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5601.15931.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCH7_9PHAE2.220e-17886.28RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM18_ECTSI9.010e-17883.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5601contigEcto-sp13_S_contig5601:4020..5545 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5601.15931.1mRNA_Ecto-sp13_S_contig5601.15931.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5601 55..8210 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5601.15931.1 ID=prot_Ecto-sp13_S_contig5601.15931.1|Name=mRNA_Ecto-sp13_S_contig5601.15931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=430bp
MFPHKGGVGRAGGGGGGGGGGGGGAGNCGVGCSHGFSPMRSRGVGHSTHS
PSAGGGGVPYGFNGGRHGEHHNQPMVCVVVPAQRAAALGLAPHPPHGLHS
AGKCTSRGTAPCDGHFSSLAQSSAASGGGGGHPGYASHTRSHSQPISHGS
GSGGGGGGGGYGHHGGSPQGNFDHHHSGAAVGTPHHLSVSPSHHVSPSSS
HHFSPSSGHHISPSSGHRVSPSAGRSYGGPPAMHMPPMPRERHGRAEPRD
FPAGASGIGGSSPSFGEYDRSSQSESHLHSPYALPEWGYDDAGGSGAGRA
VGGAMATAHGVVRSQSPPPMVRSRNGGGAPRPPSASPRAYDGHYSSTRFN
GRGGFDGFSVAGIGGASGGVATRRRSESSAMVGRSSIQQDALAAAASYYY
AVDDMGKDDVAYSRDRRGGGSRGPASRLP*
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