prot_Ecto-sp13_S_contig5579.15888.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5579.15888.1
Unique Nameprot_Ecto-sp13_S_contig5579.15888.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length168
Homology
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: D8LAY5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAY5_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 4.450e-62
Identity = 129/153 (84.31%), Postives = 134/153 (87.58%), Query Frame = 0
Query:    1 MPIRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYCNRLGSVPGSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLLRLNVANNSVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALDDAPRD 153
            MPIR LSAELVS+IVESYGQITKLNL+ N ISRVENLERLTRLSNLDL+CNRLGSVPGSLDGLALXXXXXXXXXXXX           P SLLRLNVANNS+AGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGR L ALPSLTALD+A  D
Sbjct:    1 MPIRELSAELVSEIVESYGQITKLNLATNDISRVENLERLTRLSNLDLFCNRLGSVPGSLDGLALXXXXXXXXXXXXXXXXXXXXXXXPASLLRLNVANNSIAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRILRALPSLTALDNADHD 153          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A7S2WRQ8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRQ8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.950e-8
Identity = 51/152 (33.55%), Postives = 73/152 (48.03%), Query Frame = 0
Query:    3 IRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYCNRLGSVP-GSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLL----RLNVANNSVAGVDQVSYLAPLSA-LTELVLAGNPLAAEDGYRGRTLHALPSLTALD 148
            I  LS  L+  I  +YG ++ L+LS N I ++ENL++L  L  LDL CN +  +    L  L               ++S RP L   V  L    RLN++ N +  +  +  L  LS  L +LVL G PL+++  YR R     P L  LD
Sbjct:    5 IAALSPALIERIKSTYGDLSVLDLSNNRIEKIENLQKLGSLKELDLSCNAVRYLCLYDLRALEQLESINLSRNEISFVSSGRPGLDYHVLQLPPVKRLNLSLNPIRELKDLHGLDVLSGTLEDLVLQGTPLSSQLDYRTRIATRFPWLKRLD 156          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A0L0DEI4_THETB (Leucine-rich repeats and guanylate kinase domain containing n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DEI4_THETB)

HSP 1 Score: 60.1 bits (144), Expect = 1.430e-7
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   92 LLRLNVANNSVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALD 148
            L  ++   N +  V+QV++LAPL  L ++ LAGNP+AA++GYR RTL  +P L  LD
Sbjct:  212 LFEVDAGGNFIKDVEQVAHLAPLPLLRKVTLAGNPMAADEGYRTRTLFLVPQLAYLD 268          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A0P1B771_PLAHL (Transcription initiation factor tfiid subunit n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B771_PLAHL)

HSP 1 Score: 55.5 bits (132), Expect = 7.880e-6
Identity = 44/158 (27.85%), Postives = 75/158 (47.47%), Query Frame = 0
Query:    2 PIRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYCNRLGSVPGSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLLRLNVANNSVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALDDAPRDQHRYDQ 159
            P++ L A  +S++V     +T+L+LS NA+ R+E ++ LT++  L +  N + ++  SL  L               I  L    S    L  LN++ N+++ + +V  LAPL  L    LA NP   +  Y+   +  +  L  LD+A   Q   D+
Sbjct:  127 PLKSLKA--LSELVN----LTQLDLSGNAVERLEGIQLLTQMQILTMPRNNIKTLSASLFTL---NRLINLDLSGNFIVHLPRAFSGLTVLKELNISGNNLSDLREVDVLAPLGNLLSCNLAANPFCRQPTYKDYIIFKIRFLERLDEAEVSQAARDR 275          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A2V0NYR2_9CHLO (U2 small nuclear ribonucleoprotein A n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NYR2_9CHLO)

HSP 1 Score: 54.7 bits (130), Expect = 9.200e-6
Identity = 43/146 (29.45%), Postives = 62/146 (42.47%), Query Frame = 0
Query:    3 IRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYCNRLGSVPGSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLLRLNVANNSVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALD 148
            +RG     + ++  +  Q   ++LS NAI R+E   RL RL  L L  NR+  V                          R L  A  +L  L + NN ++ +  +  L+ L  LT L L GNP+A +  YR   +  LP L  LD
Sbjct:   41 LRGNKIGAIENLGATENQFDSIDLSDNAIVRLEGFPRLPRLKALYLNNNRVSKVA-------------------------RNLQDAIGNLELLVLTNNRISELKDIDPLSSLPRLTHLSLVGNPVALKHQYRLYAIARLPKLKVLD 161          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A836C745_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C745_9CHLO)

HSP 1 Score: 54.3 bits (129), Expect = 1.350e-5
Identity = 40/146 (27.40%), Postives = 62/146 (42.47%), Query Frame = 0
Query:    3 IRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYCNRLGSVPGSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLLRLNVANNSVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALD 148
            +RG     + ++  +  Q   ++LS NAI R++   +L RL  L L  NR+G +   LD                 I +L  L+          + NN ++ +  +  LA L  L  L L GNP+  +  YR   +  LP L  LD
Sbjct:   40 LRGNKIAAIENLGATQNQFDSIDLSDNAIVRLDGFPKLLRLKQLILNNNRVGRIARGLD---------------EHIPNLDTLI----------LTNNRISNLQDIDPLATLKKLEHLSLHGNPVVTKPNYRLYVVSKLPRLKILD 160          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A7R9V1I0_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V1I0_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 1.620e-5
Identity = 40/148 (27.03%), Postives = 65/148 (43.92%), Query Frame = 0
Query:    1 MPIRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYCNRLGSVPGSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLLRLNVANNSVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALD 148
            + +RG    LV ++  +  Q   ++LS NAI +VE   RL RL  L L  NR+  +   L+                +I ++  L+          + NN +  +  +  L+ LS LT L+L GNP+  +  YR   +    +L  LD
Sbjct:   37 LDLRGNKIALVENLGVTQNQFDSIDLSDNAIVKVEGFPRLLRLKQLLLNNNRISRIAKGLED---------------TIPNIETLV----------LTNNRLGNLQDLEPLSSLSKLTMLILLGNPVTLKPNYRLYVISRCKALKVLD 159          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A2K3CV63_CHLRE (LRRcap domain-containing protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3CV63_CHLRE)

HSP 1 Score: 53.9 bits (128), Expect = 1.770e-5
Identity = 41/146 (28.08%), Postives = 61/146 (41.78%), Query Frame = 0
Query:    3 IRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYCNRLGSVPGSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLLRLNVANNSVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALD 148
            +RG     + ++  +  Q   ++LS NAI RV+   +L RL  L L  NR+  +   L+                 I SL  L+          + NN +  +  +  LA LS L  L L GNP+  +  YR   +  LP L  LD
Sbjct:   40 LRGNKIAAIENLGATQNQFDSIDLSDNAIVRVDGFPKLLRLKQLLLNNNRVARIARGLEEF---------------IPSLETLI----------LTNNRINNLQDIDPLATLSKLEHLSLHGNPVMTKPNYRLYVISKLPRLKVLD 160          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A383VJB9_TETOB (Uncharacterized protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VJB9_TETOB)

HSP 1 Score: 53.9 bits (128), Expect = 1.770e-5
Identity = 40/146 (27.40%), Postives = 65/146 (44.52%), Query Frame = 0
Query:    3 IRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYCNRLGSVPGSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLLRLNVANNSVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALD 148
            +RG     + ++  +  Q   ++LS NAI R+E   RL RL  L L  NR+  +  +L+                S+  L  L+          + NN ++ +  +  L+ L  LT L ++GNP+A +  YR  T+   P L  LD
Sbjct:   40 LRGNKIGAIENLGVTENQFDSIDLSDNAIVRLEGFPRLPRLKMLLLSNNRIAKIARNLEA---------------SVGHLESLV----------LTNNKISELRDIDPLSSLPKLTTLSISGNPVALKKEYRLYTISRCPKLKVLD 160          
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Match: A0A7S0D7F4_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D7F4_MICPS)

HSP 1 Score: 53.9 bits (128), Expect = 1.990e-5
Identity = 59/191 (30.89%), Postives = 78/191 (40.84%), Query Frame = 0
Query:    5 GLSAELVSDIVESYGQITKLNLSINAISRVEN--LERLTRLSNLDLYCNRLGSVPGSLDGLALXXXXXXXXXXXXSITSLRPLLSAPVSLLRLNVANNSVAGV--------------------------DQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALDDAPRDQHRYDQHEGAGKAD 167
            GLS       V+      +L+L  NA++ +    L RL  L +L L  NRL   P   D LA              I    P   APV LL L +A+N VA +                          + +  LA + +L  LVL GNPLA E GYR   L  LP L  LD+  R+  R ++   A +AD
Sbjct:   27 GLSEFPAKGAVKDLRYARELDLQGNALTVLPEGRLPRLEWLESLALTGNRLARFP---DDLARCNRLRTIFAGANDIVDPAPAFEAPV-LLHLGLAHNRVARLPPADVCAGAETLVSFDLAANALCGLRETLESLAAMPSLRALVLRGNPLALEPGYRLAVLKKLPLLRTLDE--REVSREERAAAAARAD 211          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5579.15888.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LAY5_ECTSI4.450e-6284.31Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A7S2WRQ8_9STRA2.950e-833.55Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A0L0DEI4_THETB1.430e-747.37Leucine-rich repeats and guanylate kinase domain c... [more]
A0A0P1B771_PLAHL7.880e-627.85Transcription initiation factor tfiid subunit n=1 ... [more]
A0A2V0NYR2_9CHLO9.200e-629.45U2 small nuclear ribonucleoprotein A n=1 Tax=Raphi... [more]
A0A836C745_9CHLO1.350e-527.40Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7R9V1I0_9CHLO1.620e-527.03Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A2K3CV63_CHLRE1.770e-528.08LRRcap domain-containing protein n=4 Tax=Chlamydom... [more]
A0A383VJB9_TETOB1.770e-527.40Uncharacterized protein n=2 Tax=Scenedesmaceae Tax... [more]
A0A7S0D7F4_MICPS1.990e-530.89Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 40..62
e-value: 27.0
score: 9.8
coord: 66..89
e-value: 4.4
score: 16.2
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 62..161
e-value: 1.7E-20
score: 74.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 3..61
e-value: 2.8E-7
score: 31.8
NoneNo IPR availablePFAMPF14580LRR_9coord: 60..148
e-value: 6.4E-9
score: 35.5
NoneNo IPR availablePANTHERPTHR18849LEUCINE RICH REPEAT PROTEINcoord: 60..151
coord: 14..77
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 17..152
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 20..41
score: 7.804
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 91..112
score: 5.055
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 42..64
score: 6.418
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 68..89
score: 7.743

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5579contigEcto-sp13_S_contig5579:2552..5804 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5579.15888.1mRNA_Ecto-sp13_S_contig5579.15888.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5579 2552..5804 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5579.15888.1 ID=prot_Ecto-sp13_S_contig5579.15888.1|Name=mRNA_Ecto-sp13_S_contig5579.15888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
MPIRGLSAELVSDIVESYGQITKLNLSINAISRVENLERLTRLSNLDLYC
NRLGSVPGSLDGLALLTRLKDLDISENSITSLRPLLSAPVSLLRLNVANN
SVAGVDQVSYLAPLSALTELVLAGNPLAAEDGYRGRTLHALPSLTALDDA
PRDQHRYDQHEGAGKADG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt