prot_Ecto-sp13_S_contig55196.15785.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig55196.15785.1
Unique Nameprot_Ecto-sp13_S_contig55196.15785.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length229
Homology
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: D8LPB8_ECTSI (EsV-1-87 n=2 Tax=root TaxID=1 RepID=D8LPB8_ECTSI)

HSP 1 Score: 385 bits (989), Expect = 1.680e-132
Identity = 195/228 (85.53%), Postives = 213/228 (93.42%), Query Frame = 0
Query:    1 VGTESTPTIAKIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQLAAMLWSIAQTFD 228
            VGTE+TP IAKIVVLDEADS+T GAFQALRRIMDVYSSTTRFIIVCN+STKIIEPIQSRCAILRFSKV+DAQLCLR+RQVCDMAGVEYDLGGI ALACVADGD+RSAINSL SI SGF +LTSENVY+TCRSPQPAKIV+I DLL N+  YVEAC+KL+GLCG+GGEGYSP DIL+SFF+ALSV+DV ESQRIEIA VIGLVQNRV  GAS+YLQLAAMLWSIA+TFD
Sbjct:  113 VGTEATPAIAKIVVLDEADSMTPGAFQALRRIMDVYSSTTRFIIVCNNSTKIIEPIQSRCAILRFSKVEDAQLCLRVRQVCDMAGVEYDLGGIGALACVADGDLRSAINSLSSIVSGFRRLTSENVYRTCRSPQPAKIVEIVDLLRNRGGYVEACKKLRGLCGKGGEGYSPMDILASFFRALSVLDVRESQRIEIAKVIGLVQNRVASGASSYLQLAAMLWSIAETFD 340          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: A0A1W5BJR6_CIOIN (Replication factor C subunit 2-like n=2 Tax=Ciona TaxID=7718 RepID=A0A1W5BJR6_CIOIN)

HSP 1 Score: 189 bits (479), Expect = 2.300e-55
Identity = 98/210 (46.67%), Postives = 138/210 (65.71%), Query Frame = 0
Query:   11 KIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQLAAML 220
            KI++LDEADS+TSGA QALRR M++YS TTRF + CN S KIIEPIQSRCA+LR+SK+ D Q+  R+ +V D  GV YD  G+EAL   A GD+R A+N+L S   GF  + S+NV+K C  P P  +  + D  V KAD  EA + +  L   G   YSP DI+++ F+ L   D+PE  ++E   ++     R+++G ++ LQL+A++
Sbjct:  117 KIIILDEADSMTSGAQQALRRTMEIYSKTTRFALACNQSDKIIEPIQSRCAVLRYSKLSDEQILSRLMEVIDKEGVRYDDSGLEALLFTAQGDMRQALNNLQSTHQGFSFINSDNVFKVCDEPHPLLLKTMLDHCV-KADLDEAYKTINHLWAMG---YSPDDIITNIFRVLKTHDIPEYVKLEFIKLVAETHMRIVQGVNSLLQLSALV 322          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: A0A2A2L1M3_9BILA (AAA domain-containing protein n=2 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2L1M3_9BILA)

HSP 1 Score: 188 bits (478), Expect = 4.230e-55
Identity = 99/219 (45.21%), Postives = 146/219 (66.67%), Query Frame = 0
Query:   11 KIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVP---ESQRIEIAMVIGLVQNRVLRGASTYLQLAAMLWSIAQT 226
            KI++LDEADS+T GA QALRR M++YSSTTRF++ CN+S KIIEPIQSRCA+LR+ ++ DA++  R+  VC+   V YD  G++AL   A+GD+R A+N+L    +G+  ++SENV+K C +P P  I+D+      K +  EAC+ +  L   G   YSP DI+S+ F+ +  I++P   E +R+E    IGL   RV+ G ST +QL+ ++  + QT
Sbjct:  129 KIIILDEADSMTEGAQQALRRTMELYSSTTRFVLACNNSEKIIEPIQSRCALLRYKRLTDAEMLARLMYVCEKEEVRYDDKGMQALLFTAEGDMRQALNNLQCTVNGYEFVSSENVFKVCDAPHPQLIIDMITSCT-KGEMPEACKVIHDLYRAG---YSPDDIISTLFRIVKNIEIPALSEGKRMEFIREIGLCHIRVVEGLSTLVQLSGLVAKLCQT 343          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: D8UFN0_VOLCA (DNA replication factor C complex subunit 2 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UFN0_VOLCA)

HSP 1 Score: 185 bits (469), Expect = 7.040e-54
Identity = 98/210 (46.67%), Postives = 139/210 (66.19%), Query Frame = 0
Query:   11 KIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQLAAML 220
            KIV+LDEADS+T+GA QALRR M++YS+TTRF + CN S+KIIEPIQSRCAI+R+S++ D  +  R+R VC+  GV Y+  G+EAL   ADGD+R A+N+L +  SGF  ++ ENV+K C  P P  ++ I +   +KAD   A   LKGL   G   YS  DI+++ F+ +   D+PE  ++E    +G    R+  G ++ LQL+ ML
Sbjct:  119 KIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCEKEGVTYNDEGMEALIFTADGDMRQALNNLQATHSGFGFISQENVFKVCDQPHPKLVMSIIENC-SKADLDAAYAGLKGLVDLG---YSSHDIITTVFRVVRNADIPEFLKLEYLREVGFCHMRIAEGVNSRLQLSGML 324          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: A0A7S3HE77_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE77_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.010e-53
Identity = 94/206 (45.63%), Postives = 140/206 (67.96%), Query Frame = 0
Query:   11 KIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQL 216
            K+++LDEADS+T+ A QALRR M+++S+TTRF + CN+STKIIEPIQSRCA+LR++++ DA++  R++ V     V YD+ G+EA+  VA+GD+R+A+NS+ S  SGF  ++SE+V+K C  PQP KI    + L  K    EA   + GL   G   Y+ TDI+ + FK    +D+PE+Q+++    IG    R+ +G +T LQL
Sbjct:  109 KLIILDEADSMTAAAQQALRRTMEIFSNTTRFALACNNSTKIIEPIQSRCAVLRYTRLSDAEVLSRLQDVAAKESVSYDVSGLEAIVFVAEGDMRNALNSMQSTVSGFGTVSSESVFKICDQPQPLKIRAALESL-RKGGLREAQDIIMGLWAAG---YAATDIIQTLFKVTRALDMPETQKLDFIREIGFSHMRIAQGLNTQLQL 310          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: A0A0N4VBB6_ENTVE (AAA domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4VBB6_ENTVE)

HSP 1 Score: 183 bits (465), Expect = 2.030e-53
Identity = 98/210 (46.67%), Postives = 135/210 (64.29%), Query Frame = 0
Query:   11 KIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQLAAML 220
            KI++LDEADS+T GA QALRR M+VYS TTRF + CN S KIIEPIQSRCA++R+++++D  +  R+  VC+   VEYD  G+EA+   A GD+R A+N+L    SGF ++ +ENV+K C  P P  I  + +L V K    EA   +  L   G   Y+P DIL++ F+   V DVPE  ++E    IGL   RV+ G ST LQL+ ++
Sbjct:  104 KIIILDEADSMTEGAQQALRRTMEVYSRTTRFALACNQSEKIIEPIQSRCALIRYTRLEDEDIAKRLLTVCEAEKVEYDDNGLEAIVFTAQGDMRQALNNLQCTVSGFKRVVAENVFKVCDEPHPEMIKQMIELCV-KEKIFEAGSIIHNLYRMG---YAPEDILTNMFRMCKVADVPEYLKMEYIKEIGLCHIRVVEGLSTLLQLSGLI 309          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: A0A075B4B8_ROZAC (Replication factor C subunit 2 n=2 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075B4B8_ROZAC)

HSP 1 Score: 183 bits (465), Expect = 3.540e-53
Identity = 101/213 (47.42%), Postives = 142/213 (66.67%), Query Frame = 0
Query:    9 IAKIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKAL-SVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQLAAML 220
            + KIV+LDEADS+T+GA QALRRIM++YS+TTRF + CN S+KIIEPIQSRCAILRF+K+ D ++  R+  +C    VEY   G++AL   +DGD+R AIN+L S   GF  + +ENVYK C  P P  + DI    + K D  +A   LK L      GYS  DI+ +FFK + ++ D+ E+ ++E+   IG V  RVL G +++LQL+ ++
Sbjct:  115 VHKIVILDEADSMTAGAQQALRRIMEMYSNTTRFALACNISSKIIEPIQSRCAILRFTKLSDDEILYRLLSICREENVEYQHEGLQALLFTSDGDMRQAINNLQSTFYGFGFINAENVYKVCDQPHPTIVQDIVKSCLAK-DIEKALLLLKNL---SSMGYSSIDIIGTFFKVVKNMDDINEALQLELIKEIGFVHMRVLEGLTSFLQLSGLI 323          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: A0A1E4TT57_PACTA (AAA domain-containing protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TT57_PACTA)

HSP 1 Score: 182 bits (463), Expect = 4.630e-53
Identity = 98/210 (46.67%), Postives = 140/210 (66.67%), Query Frame = 0
Query:   11 KIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQLAAML 220
            KI++LDEADS+T GA QALRR M++YS+TTRF   CN S+KIIEP+QSRCAILR++K+ D Q+  R+ ++  M  +EY   G+EAL   A+GD+R AIN+L S  +GF  +T +NVYK   SP P   + +  +L+N  D  +  + L+ L     +GYS  D++++ FK    +D+ ES ++EI  +IGL   R+L G  TY+QLA ML
Sbjct:  117 KIIILDEADSMTPGAQQALRRTMEIYSNTTRFAFACNISSKIIEPLQSRCAILRYTKLYDEQVLKRLLEIIKMENIEYTNDGLEALLFTAEGDMRQAINNLQSTVAGFKFVTGDNVYKIVDSPHP---LIVKKMLLNAVDK-DLNKSLQLLDSLWAKGYSAVDLITTSFKVSKNLDINESLKLEIIKIIGLTHLRILEGVGTYIQLAGML 322          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: A0A0B2VC27_TOXCA (Replication factor C subunit 2 n=3 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VC27_TOXCA)

HSP 1 Score: 182 bits (463), Expect = 6.870e-53
Identity = 100/210 (47.62%), Postives = 135/210 (64.29%), Query Frame = 0
Query:   11 KIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQLAAML 220
            KI++LDEADS+T GA QALRR M+V+S TTRF + CN S KIIEPIQSRCAILRFSK+ D +L  R+ QVCD   V YD  GI+AL   A GD+R A+N+L    +GF ++T+ENV+K C  P P  I  + +L V +  Y EA   ++ L   G   YS  DILS+ F+     ++PE  ++E    IGL   R + G ++ LQL+ ++
Sbjct:  126 KIIILDEADSMTEGAQQALRRTMEVFSRTTRFALACNQSDKIIEPIQSRCAILRFSKLTDEELATRLLQVCDYEKVVYDDSGIDALIFTAQGDMRQALNNLQCTVAGFERVTAENVFKVCDEPHPEMIKKMLELCVQEKIY-EANEIIQDLYKMG---YSSEDILSNTFRVCKTANIPEYLKLEYIKEIGLCHARAVEGVASLLQLSGLI 331          
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Match: A0A0M3JWI0_ANISI (Replication factor C subunit 2 (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3JWI0_ANISI)

HSP 1 Score: 181 bits (460), Expect = 1.020e-52
Identity = 98/210 (46.67%), Postives = 137/210 (65.24%), Query Frame = 0
Query:   11 KIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDSTKIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVADGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKADYVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIGLVQNRVLRGASTYLQLAAML 220
            KIV+LDEADS+T GA QALRR M+V+S TTRF + CN S KIIEPIQSRCAILRFSK+ D ++  R+ +VCD   V YD  GI+AL   A GD+R A+N+L    +GF ++ SENV K C  P P  I  + +L V + D++EA + ++ L   G   +S  DILS+ F+    +++PE  ++E    IGL   R + G ++ LQL+ ++
Sbjct:  103 KIVILDEADSMTEGAQQALRRTMEVFSRTTRFALACNQSDKIIEPIQSRCAILRFSKLSDEEVAARLLKVCDYEKVTYDNSGIDALIFTAQGDMRQALNNLQCTVAGFEQVNSENVLKVCDEPHPGMIKRMLELCVQE-DFIEANQIMQSLYKMG---HSSEDILSNTFRVCKTVNIPEYLKMEFIKEIGLCHARAVEGITSSLQLSGLV 308          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55196.15785.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPB8_ECTSI1.680e-13285.53EsV-1-87 n=2 Tax=root TaxID=1 RepID=D8LPB8_ECTSI[more]
A0A1W5BJR6_CIOIN2.300e-5546.67Replication factor C subunit 2-like n=2 Tax=Ciona ... [more]
A0A2A2L1M3_9BILA4.230e-5545.21AAA domain-containing protein n=2 Tax=Diploscapter... [more]
D8UFN0_VOLCA7.040e-5446.67DNA replication factor C complex subunit 2 n=1 Tax... [more]
A0A7S3HE77_9STRA1.010e-5345.63Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A0N4VBB6_ENTVE2.030e-5346.67AAA domain-containing protein n=1 Tax=Enterobius v... [more]
A0A075B4B8_ROZAC3.540e-5347.42Replication factor C subunit 2 n=2 Tax=Rozella all... [more]
A0A1E4TT57_PACTA4.630e-5346.67AAA domain-containing protein n=1 Tax=Pachysolen t... [more]
A0A0B2VC27_TOXCA6.870e-5347.62Replication factor C subunit 2 n=3 Tax=Toxocara ca... [more]
A0A0M3JWI0_ANISI1.020e-5246.67Replication factor C subunit 2 (inferred by orthol... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13177DNA_pol3_delta2coord: 10..68
e-value: 7.2E-7
score: 29.1
NoneNo IPR availableGENE3D3.40.50.300coord: 3..67
e-value: 4.6E-16
score: 61.3
NoneNo IPR availableGENE3D1.20.272.10coord: 133..227
e-value: 1.3E-18
score: 68.8
NoneNo IPR availableGENE3D1.10.8.60coord: 69..132
e-value: 1.3E-15
score: 58.5
NoneNo IPR availablePANTHERPTHR11669REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNITcoord: 8..224
NoneNo IPR availablePANTHERPTHR11669:SF5REPLICATION FACTOR C SUBUNIT 2coord: 8..224
IPR013748Replication factor C, C-terminalPFAMPF08542Rep_fac_Ccoord: 133..221
e-value: 9.9E-16
score: 57.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 10..111
IPR008921DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminalSUPERFAMILY48019post-AAA+ oligomerization domain-likecoord: 133..226

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55196contigEcto-sp13_S_contig55196:2..688 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55196.15785.1mRNA_Ecto-sp13_S_contig55196.15785.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig55196 2..688 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig55196.15785.1 ID=prot_Ecto-sp13_S_contig55196.15785.1|Name=mRNA_Ecto-sp13_S_contig55196.15785.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
VGTESTPTIAKIVVLDEADSITSGAFQALRRIMDVYSSTTRFIIVCNDST
KIIEPIQSRCAILRFSKVDDAQLCLRIRQVCDMAGVEYDLGGIEALACVA
DGDVRSAINSLGSIASGFCKLTSENVYKTCRSPQPAKIVDIFDLLVNKAD
YVEACRKLKGLCGEGGEGYSPTDILSSFFKALSVIDVPESQRIEIAMVIG
LVQNRVLRGASTYLQLAAMLWSIAQTFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013748Rep_factorC_C
IPR027417P-loop_NTPase
IPR008921DNA_pol3_clamp-load_cplx_C