prot_Ecto-sp13_S_contig55179.15783.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig55179.15783.1
Unique Nameprot_Ecto-sp13_S_contig55179.15783.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length96
Homology
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 4.100e-53
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTT
Sbjct:  894 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTT 989          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 6.680e-40
Identity = 76/98 (77.55%), Postives = 89/98 (90.82%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGET--QEPASRRALIEQVVQTALPETKNADEVSTT 96
            VLGKYCEKLDPS+AFLAYK+A G CDDD++RVTSENGL+K+QARYLVE+QD+DLWA+VLT  + +   +EPASRRALI+QVVQTALPETK ADEVSTT
Sbjct:  909 VLGKYCEKLDPSLAFLAYKRANGECDDDIIRVTSENGLYKDQARYLVERQDLDLWARVLTPPDMDNTKKEPASRRALIDQVVQTALPETKVADEVSTT 1006          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 145 bits (366), Expect = 2.040e-38
Identity = 74/97 (76.29%), Postives = 88/97 (90.72%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAE-GETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            V+GK+CEKLDP++A LAY++AGGACDDDL+RVT+ENGLFK+ ARYLVE+QD+DLW KVL K E GET+ PA RRALI+Q+VQTALPETKN DEVSTT
Sbjct: 1312 VVGKFCEKLDPALAVLAYRRAGGACDDDLIRVTTENGLFKDLARYLVERQDLDLWGKVLKKQEEGETESPA-RRALIDQIVQTALPETKNPDEVSTT 1407          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: A0A225V906_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V906_9STRA)

HSP 1 Score: 144 bits (362), Expect = 6.980e-38
Identity = 71/96 (73.96%), Postives = 84/96 (87.50%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            V+GK+CEKLDP++A+LAY++AGGACDDDL+RVT+ENGLFK+ ARYLVE+QD+DLW KVL K E    E  SRRALI+QVVQTALPET N DEVSTT
Sbjct:  502 VVGKFCEKLDPALAYLAYRRAGGACDDDLIRVTTENGLFKDLARYLVERQDLDLWGKVLVKQEEGEPESPSRRALIDQVVQTALPETTNPDEVSTT 597          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: F0W5K0_9STRA (Clathrin heavy chain n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5K0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 7.040e-38
Identity = 70/96 (72.92%), Postives = 85/96 (88.54%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            V+GK+CEKLDP++AFLAY++AGGACD+DL+RVT +NGLFK+ ARYLVE+QD+DLW KVL K +   QE  +RRALI+QVVQTALPETKN DEVSTT
Sbjct:  911 VVGKFCEKLDPALAFLAYRRAGGACDEDLIRVTIDNGLFKDLARYLVERQDLDLWGKVLMKQDENLQESPNRRALIDQVVQTALPETKNPDEVSTT 1006          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: A0A2P4XMC0_9STRA (Clathrin heavy chain n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMC0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 9.420e-38
Identity = 70/96 (72.92%), Postives = 84/96 (87.50%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            ++GK+CEKLDP++A+LAY++AGGACDDDL+RVT+ENGLFK+ ARYLVE+QD+DLW KVL K E    E  SRRALI+QVVQTALPET N DEVSTT
Sbjct:  166 IVGKFCEKLDPALAYLAYRRAGGACDDDLIRVTTENGLFKDLARYLVERQDLDLWGKVLVKQEEGEAESPSRRALIDQVVQTALPETTNPDEVSTT 261          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: K3WLC2_GLOUD (Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 RepID=K3WLC2_GLOUD)

HSP 1 Score: 142 bits (358), Expect = 2.440e-37
Identity = 70/96 (72.92%), Postives = 84/96 (87.50%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            V+G +CEKLDP++AFLAY++AGGACD+DL+RVT+ENGLFK+ ARYLVE+QD+DLW KVL K E    E  +RRALI+QVVQTALPETKN DEVSTT
Sbjct:  909 VVGLFCEKLDPALAFLAYRRAGGACDEDLIRVTTENGLFKDLARYLVERQDLDLWGKVLVKQEEGESESPNRRALIDQVVQTALPETKNPDEVSTT 1004          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: A0A5D6XWJ0_9STRA (Clathrin-link domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWJ0_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.360e-37
Identity = 72/97 (74.23%), Postives = 88/97 (90.72%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKAE-GETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            V+G +CEKLDP++AFLAY++AGGACD+DL+RVT+ENGLFK+ ARYLVE+QD++LW KVL K E GET+ P +RRALI+QVVQTALPETKN DEVSTT
Sbjct:  909 VVGVFCEKLDPALAFLAYRRAGGACDEDLIRVTTENGLFKDLARYLVERQDLELWGKVLVKQEEGETESP-NRRALIDQVVQTALPETKNPDEVSTT 1004          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: A0A067C3W3_SAPPC (Clathrin-link domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C3W3_SAPPC)

HSP 1 Score: 139 bits (351), Expect = 2.130e-36
Identity = 71/97 (73.20%), Postives = 86/97 (88.66%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKA-EGETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            V+GK+CEKLDP++AFLAY++AGGACDDDL+RVT+EN LFK+ ARYLV +QD+DLW KVL KA EGE + P +RRALI+QVVQTALPE +N DEVSTT
Sbjct:  906 VVGKFCEKLDPALAFLAYQRAGGACDDDLIRVTTENSLFKDLARYLVHRQDLDLWGKVLVKAVEGEVEAP-NRRALIDQVVQTALPEARNPDEVSTT 1001          
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Match: A0A3R6ZXA9_9STRA (Clathrin-link domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZXA9_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.160e-36
Identity = 72/97 (74.23%), Postives = 85/97 (87.63%), Query Frame = 0
Query:    1 VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQDMDLWAKVLTKA-EGETQEPASRRALIEQVVQTALPETKNADEVSTT 96
            V+GK+CEKLDP++AFLAY++A GACDDDL+RVT+EN LFK+ ARYLV +QD+DLW KVL KA EGE + P SRRALI+QVVQTALPE KN DEVSTT
Sbjct: 1442 VVGKFCEKLDPALAFLAYQRANGACDDDLIRVTTENSLFKDLARYLVHRQDLDLWGKVLVKAVEGEAEAP-SRRALIDQVVQTALPEAKNPDEVSTT 1537          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55179.15783.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD1_ECTSI4.100e-53100.00Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZH1_9STRA6.680e-4077.55Clathrin heavy chain n=1 Tax=Tribonema minus TaxID... [more]
A0A2D4BEN2_PYTIN2.040e-3876.29Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re... [more]
A0A225V906_9STRA6.980e-3873.96Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho... [more]
F0W5K0_9STRA7.040e-3872.92Clathrin heavy chain n=1 Tax=Albugo laibachii Nc14... [more]
A0A2P4XMC0_9STRA9.420e-3872.92Clathrin heavy chain n=1 Tax=Phytophthora palmivor... [more]
K3WLC2_GLOUD2.440e-3772.92Clathrin heavy chain n=31 Tax=Oomycota TaxID=4762 ... [more]
A0A5D6XWJ0_9STRA3.360e-3774.23Clathrin-link domain-containing protein n=1 Tax=Py... [more]
A0A067C3W3_SAPPC2.130e-3673.20Clathrin-link domain-containing protein n=1 Tax=Sa... [more]
A0A3R6ZXA9_9STRA2.160e-3674.23Clathrin-link domain-containing protein n=8 Tax=Ap... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000547Clathrin, heavy chain/VPS, 7-fold repeatPFAMPF00637Clathrincoord: 2..60
e-value: 7.5E-8
score: 32.4
NoneNo IPR availablePANTHERPTHR10292:SF1CLATHRIN HEAVY CHAINcoord: 1..96
NoneNo IPR availablePANTHERPTHR10292CLATHRIN HEAVY CHAIN RELATEDcoord: 1..96
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 2..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55179contigEcto-sp13_S_contig55179:70..923 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55179.15783.1mRNA_Ecto-sp13_S_contig55179.15783.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig55179 70..923 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig55179.15783.1 ID=prot_Ecto-sp13_S_contig55179.15783.1|Name=mRNA_Ecto-sp13_S_contig55179.15783.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
VLGKYCEKLDPSMAFLAYKKAGGACDDDLLRVTSENGLFKNQARYLVEKQ
DMDLWAKVLTKAEGETQEPASRRALIEQVVQTALPETKNADEVSTT
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000547Clathrin_H-chain/VPS_repeat
IPR016024ARM-type_fold