prot_Ecto-sp13_S_contig5511.15770.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5511.15770.1
Unique Nameprot_Ecto-sp13_S_contig5511.15770.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length168
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5511.15770.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 10..33
e-value: 190.0
score: 2.8
coord: 82..106
e-value: 22.0
score: 10.4
coord: 34..58
e-value: 31.0
score: 9.2
coord: 130..154
e-value: 18.0
score: 11.1
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 78..168
e-value: 4.0E-31
score: 109.9
coord: 1..77
e-value: 4.2E-23
score: 83.7
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 129..167
e-value: 2.5E-6
score: 27.1
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 76..167
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 76..167
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 1..76
NoneNo IPR availablePANTHERPTHR46662:SF8coord: 35..112
coord: 1..76
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 35..112
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5511contigEcto-sp13_S_contig5511:138..3661 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5511.15770.1mRNA_Ecto-sp13_S_contig5511.15770.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5511 138..3663 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5511.15770.1 ID=prot_Ecto-sp13_S_contig5511.15770.1|Name=mRNA_Ecto-sp13_S_contig5511.15770.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
GRIPPELGALSELRVLALNSNKLTGPVPPELGKLGALKILDVSINNLDGS
IPPELGALNNLWALRLSTNNLTGAIPLELGDLRELQALWLNNNQLTGPIP
KELGALSKLEKLWLEQNGLTGPIPVELGRLTVLEYLDLGRNELTGEIPAS
LGQLVKLVTLDLGGNKLG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt