prot_Ecto-sp13_S_contig5507.15763.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig5507.15763.1
Unique Name	prot_Ecto-sp13_S_contig5507.15763.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	166

Homology

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BLAST of mRNA_Ecto-sp13_S_contig5507.15763.1 vs. uniprot
Match: D8LSJ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ6_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 1.720e-97
Identity = 163/166 (98.19%), Postives = 163/166 (98.19%), Query Frame = 0

Query:    1 GEFDRAQGVVRLMVDDGEGGGLQPDAVTYTCLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREAGIRPNSRALLDLVNLCRANGLQSVAARIMRERS 166
            GEFDRA GVVRLMVDDGEGGGLQPDAVTYT LIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMRE GIRPNSRALLDLVNLCRANGLQSVAARIMRERS
Sbjct:  908 GEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRANGLQSVAARIMRERS 1073

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BLAST of mRNA_Ecto-sp13_S_contig5507.15763.1 vs. uniprot
Match: A0A836CEM1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEM1_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.860e-36
Identity = 80/166 (48.19%), Postives = 107/166 (64.46%), Query Frame = 0

Query:    1 GEFDRAQGVVRLMVDDGEGGGLQPDAVTYTCLIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREAGIRPNSRALLDLVNLCRANGLQSVAARIMRERS 166
            G+ +RA  V+R M +D     L PDA+T+T LIK AA A     + AEEIFA MQQRTNHFSTF RP+E T+ H++ A++  + + R  E+W Q L+ G+AP  R+    L AC   GD+  AL VY VM  AGIRP++R+LL LV LC + G+   A  I+R+RS
Sbjct:  693 GDLERAMAVLRQMYEDEHC--LPPDAITFTSLIKTAAAA--HNADAAEEIFAAMQQRTNHFSTFHRPSERTFRHMITANMNIKRFSRVQELWAQMLAEGLAPSSRTCSLVLGACRHQGDLTQALSVYGVMNTAGIRPDNRSLLSLVRLCESAGMADKARDIIRDRS 854

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BLAST of mRNA_Ecto-sp13_S_contig5507.15763.1 vs. uniprot
Match: A0A7S0XEC2_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XEC2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.710e-8
Identity = 34/78 (43.59%), Postives = 49/78 (62.82%), Query Frame = 0

Query:    1 GEFDRAQGVVRLMVDDGEGGGLQPDAVTYTCLIKAAA-RAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMR 77
            G+ DRA   +  M ++G    ++P+ +TYT LIKA A  +    +E AE IF  MQQR+NHFS + +P E+TY  LM+
Sbjct:  209 GDIDRALETMTAMQENG----IEPNVITYTSLIKACAFNSRNEMIELAENIFNEMQQRSNHFSNYIQPNEMTYEKLMQ 282

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig5507.15763.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig5507.15763.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LSJ6_ECTSI	1.720e-97	98.19	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CEM1_9STRA	1.860e-36	48.19	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S0XEC2_9STRA	1.710e-8	43.59	Hypothetical protein n=1 Tax=Chromulina nebulosa T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..166 e-value: 6.4E-29 score: 103.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 111..139 e-value: 4.4E-6 score: 24.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 68..102 score: 8.44
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 25..57 score: 8.385
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 103..137 score: 9.24
IPR033443	Pentacotripeptide-repeat region of PRORP	PFAM	PF17177	PPR_long	coord: 29..155 e-value: 4.4E-9 score: 36.0
None	No IPR available	PANTHER	PTHR46128	FAMILY NOT NAMED	coord: 1..155

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig5507	contig	Ecto-sp13_S_contig5507:7289..8541 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig5507.15763.1	mRNA_Ecto-sp13_S_contig5507.15763.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig5507 7289..8541 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig5507.15763.1 ID=prot_Ecto-sp13_S_contig5507.15763.1|Name=mRNA_Ecto-sp13_S_contig5507.15763.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=166bp
GEFDRAQGVVRLMVDDGEGGGLQPDAVTYTCLIKAAARAVPPRVEEAEEI
FATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWRQQLSAGV
APGPRSTRAALAACGGAGDVDTALQVYDVMREAGIRPNSRALLDLVNLCR
ANGLQSVAARIMRERS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat
IPR033443	PPR_long