prot_Ecto-sp13_S_contig55002.15752.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig55002.15752.1
Unique Nameprot_Ecto-sp13_S_contig55002.15752.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length138
Homology
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 9.710e-54
Identity = 100/138 (72.46%), Postives = 100/138 (72.46%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK 138
            GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEK                                      VLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK
Sbjct:   45 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEK--------------------------------------VLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK 144          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 166 bits (419), Expect = 6.590e-45
Identity = 83/138 (60.14%), Postives = 96/138 (69.57%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK 138
            GTGKTVCLI+LIT+YQ+ HPEVGKLIYCTRTVPEM+KC+EE+KRVI YR++QLGP G K                                      VLALCLSSRRNLCIH+RV+E++DREAVDGACRDMTASWVR+
Sbjct:   45 GTGKTVCLIALITAYQYQHPEVGKLIYCTRTVPEMVKCVEEIKRVIRYREEQLGPAGSK--------------------------------------VLALCLSSRRNLCIHQRVLEDADREAVDGACRDMTASWVRQ 144          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: A0A7S1UJA8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJA8_9STRA)

HSP 1 Score: 154 bits (390), Expect = 6.300e-44
Identity = 78/136 (57.35%), Postives = 90/136 (66.18%), Query Frame = 0
Query:    3 GKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK 138
            GKTVCL+SLITSYQ+A PE+GKLIYCTRTVPEM+KC+EELKRV+ YR+  +GPEG                                      G +LALCLSSRRN+CIH+RV+EESDREAVD  CR MTASWVRK
Sbjct:   27 GKTVCLMSLITSYQYARPEMGKLIYCTRTVPEMVKCVEELKRVVAYREQCVGPEG--------------------------------------GKILALCLSSRRNMCIHDRVMEESDREAVDATCRGMTASWVRK 124          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 159 bits (402), Expect = 1.440e-42
Identity = 83/138 (60.14%), Postives = 92/138 (66.67%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK 138
            GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEM+KC+EE+++VI YR   +G EG                                      G VLA+CLSSRRNLCIHERV+EESDREAVD ACR MTASWVR+
Sbjct:   46 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMVKCVEEVRKVIDYRVKCIGAEG--------------------------------------GKVLAVCLSSRRNLCIHERVMEESDREAVDSACRSMTASWVRQ 145          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: A0A482RW16_9ARCH (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RW16_9ARCH)

HSP 1 Score: 150 bits (379), Expect = 1.060e-41
Identity = 79/137 (57.66%), Postives = 87/137 (63.50%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVR 137
            GTGKTVCLISLITSYQF +P+ GKLIYCTRTVPEM KC++E+K+VI YR+  LGPEG                                      G VLALCLSSRRN+CIH RV EESDRE VD  CRDMTASWVR
Sbjct:   66 GTGKTVCLISLITSYQFQYPQTGKLIYCTRTVPEMAKCMDEIKKVIEYRQKLLGPEG--------------------------------------GRVLALCLSSRRNMCIHPRVQEESDRETVDTKCRDMTASWVR 164          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: A0A7S2SJK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJK5_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.120e-41
Identity = 75/139 (53.96%), Postives = 93/139 (66.91%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLALCLSSRRNLCIHERVI-EESDREAVDGACRDMTASWVRK 138
            GTGKTVC++SL+TSYQ AHPE+GKLIYCTRTVPEM KC++ELK+VIGYR   LG    +             +AG + +                   LALCLSSRRN+CIHE+V+ ++SDREAVD  CRD+TASWVR+
Sbjct:    1 GTGKTVCVLSLVTSYQLAHPEMGKLIYCTRTVPEMSKCMQELKQVIGYRDKMLGTTDAEIG-----------AAGGSTF-------------------LALCLSSRRNMCIHEKVMAQDSDREAVDSLCRDLTASWVRQ 109          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 154 bits (390), Expect = 6.070e-41
Identity = 79/138 (57.25%), Postives = 90/138 (65.22%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK 138
            GTGKTVCL+SLITS QFA PE+GK IYCTRTVPEM+KC+EELKRV+ YR + +G EG K                                      +LALCLSSRRN+CIH+RV+EESDREAVD ACR MTASWVRK
Sbjct:   89 GTGKTVCLMSLITSVQFARPEMGKFIYCTRTVPEMVKCVEELKRVVNYRAECVGAEGRK--------------------------------------ILALCLSSRRNMCIHDRVLEESDREAVDAACRSMTASWVRK 188          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: A0A7S1CFN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFN5_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.170e-39
Identity = 76/138 (55.07%), Postives = 84/138 (60.87%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK 138
            GTGKTV L+SLITSYQ AHP VGKL+YCTRTVPEM KC+ ELKRVI YR  +LGPEG                                      G VLA CLSSRRN+CIHERV+ E+DRE VD ACR  TA WVR+
Sbjct:   55 GTGKTVALLSLITSYQLAHPTVGKLMYCTRTVPEMTKCVGELKRVIEYRVKELGPEG--------------------------------------GNVLACCLSSRRNMCIHERVMAEADREQVDAACRKRTAPWVRE 154          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: A0A7S2IEH0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEH0_9STRA)

HSP 1 Score: 134 bits (337), Expect = 2.840e-36
Identity = 79/163 (48.47%), Postives = 95/163 (58.28%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPE------GEKASTVVFLWSCKPL----SAGKAVYTHSLRVRPSII-------------FPTLRGY----VLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWV 136
            GTGKTVCL+SLITSYQFA+P  GKL+YCTRTVPEM   +EEL  V+ YR +QL  +      G+   T +     K +    SA      + +R                    P   G     VLALCLSSRRN+C+HERV+EESDREAVD ACR MTA+WV
Sbjct:   71 GTGKTVCLLSLITSYQFANPSAGKLVYCTRTVPEMNSVMEELATVLSYRAEQLQDDQNQQEVGDNGGTAMDGSGAKDIEDVVSADTPESNNGVRKXXXXXXXXXXXXXXXMGSIPDNGGAGGSGVLALCLSSRRNMCVHERVMEESDREAVDAACRSMTATWV 233          
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Match: A0A1Z5J667_FISSO (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J667_FISSO)

HSP 1 Score: 136 bits (342), Expect = 1.750e-34
Identity = 83/153 (54.25%), Postives = 92/153 (60.13%), Query Frame = 0
Query:    1 GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRKDQLGPEGEKASTVVFLWSCKPLS--AGKAVYTHSLRVR--------------PSIIFPTLRGY-VLALCLSSRRNLCIHERVIEESDREAVDGACRDMTASWV 136
            GTGKTVCL+SLITSYQ+A+P  GKLIYCTRTVPEM   +EEL  V+ YR   L PE  + S V    S   +    G      S R R              PS       G  VLALCLSSRRN+CIHERV+ ESDREAVD ACR MTASWV
Sbjct:   45 GTGKTVCLLSLITSYQYANPSAGKLIYCTRTVPEMNHVMEELATVLDYRARMLHPE--QPSEVEISCSSGDMEDIGGTTADRSSKRARKVYRREDSGKAPMGPSSSRAGAGGSGVLALCLSSRRNMCIHERVMAESDREAVDSACRSMTASWV 195          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55002.15752.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI9.710e-5472.46General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA6.590e-4560.14General transcription and DNA repair factor IIH he... [more]
A0A7S1UJA8_9STRA6.300e-4457.35Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
K8YZX4_NANGC1.440e-4260.14General transcription and DNA repair factor IIH he... [more]
A0A482RW16_9ARCH1.060e-4157.66Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7S2SJK5_9STRA1.120e-4153.96Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9U4D1_9STRA6.070e-4157.25General transcription and DNA repair factor IIH he... [more]
A0A7S1CFN5_9STRA4.170e-3955.07Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2IEH0_9STRA2.840e-3648.47Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A1Z5J667_FISSO1.750e-3454.25General transcription and DNA repair factor IIH he... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010614DEAD2PFAMPF06733DEAD_2coord: 97..137
e-value: 1.8E-7
score: 30.9
IPR001945RAD3/XPD familyPANTHERPTHR11472:SF1GENERAL TRANSCRIPTION AND DNA REPAIR FACTOR IIH HELICASE SUBUNIT XPDcoord: 1..138
NoneNo IPR availablePANTHERPTHR11472DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBERcoord: 1..138
IPR014013Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-typePROSITEPS51193HELICASE_ATP_BIND_2coord: 1..138
score: 11.213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55002contigEcto-sp13_S_contig55002:6..912 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55002.15752.1mRNA_Ecto-sp13_S_contig55002.15752.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig55002 6..912 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig55002.15752.1 ID=prot_Ecto-sp13_S_contig55002.15752.1|Name=mRNA_Ecto-sp13_S_contig55002.15752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=138bp
GTGKTVCLISLITSYQFAHPEVGKLIYCTRTVPEMMKCIEELKRVIGYRK
DQLGPEGEKASTVVFLWSCKPLSAGKAVYTHSLRVRPSIIFPTLRGYVLA
LCLSSRRNLCIHERVIEESDREAVDGACRDMTASWVRK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010614DEAD_2
IPR001945RAD3/XPD
IPR014013Helic_SF1/SF2_ATP-bd_DinG/Rad3