prot_Ecto-sp13_S_contig5499.15743.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5499.15743.1
Unique Nameprot_Ecto-sp13_S_contig5499.15743.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length484
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5499.15743.1 vs. uniprot
Match: D8LRP1_ECTSI (Letm1 RBD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRP1_ECTSI)

HSP 1 Score: 842 bits (2175), Expect = 1.830e-306
Identity = 445/482 (92.32%), Postives = 452/482 (93.78%), Query Frame = 0 
Query:    1 MRLSEVLSVLNLAAVAQGGRGTAGWGSKSAAVMSDRRVFNDRHRQHQSRSAVAFFGRRPRTTTPRVIGSSEAESAVDALSDASGAGAKAVRGSPPAADISSADSTGDSAAAPSVSAAQGIVNTFRDFWGHARHGTFALWGNFQARRHTSQDIRKRVKAGHVMTYAEHAHLERGATDRRKLLQYLIAYAVSPKNFVYVVWYVPGLLPSTFVKPHTIRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKGKRREEGSRQSKKMEKLERQREMVLDVLEADGKRQVFERFQEHMVVPAPASPDPENAAASNNKGTKKSKKPKPQKLKLPPASKGVPNTYIKALGKGTGLSGWWHISPGFYVRYCLSERLRDLGRMDDVLRTVSLESLSDSDLREACDARAINVGNRLGGDREPRDLRKLLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRKALAVVGKGGAI 482
            MRLSE LSVLNLAAVAQGG GTAGWGSKSAAV+SDRRVFNDRHRQ QSRSAVAFFGRRPRT+TPRV GSSEA SAVDAL DASGAGA  VRGSP AAD SS     DSAAAP VSAAQGIVNTFRDFWGHAR GTFALWGNF+    TSQDIRKRVKAGHVMTYAEHAHLERGATDRRKLLQYLIAYAVSP+NFVYVVWYVPGLLPSTFVKPHTIRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKGK REEGSRQSKKMEKLERQREMVLDVLEAD KRQVFERFQEHMVV APASPDPEN AASNNKGT KSKKPKPQKLKLPPASKGVPN YIK LGKGTGLSGWWH+SPGFYVRYCLSERLRDLG+MDDVLRTVSLESLSDSDLREACDARAINVGNRLGGDREP+DLRK LGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRKALAV GKGGAI
Sbjct:    1 MRLSEFLSVLNLAAVAQGGHGTAGWGSKSAAVVSDRRVFNDRHRQPQSRSAVAFFGRRPRTSTPRVTGSSEAGSAVDALPDASGAGANGVRGSPAAADTSSXXXXXDSAAAPRVSAAQGIVNTFRDFWGHARDGTFALWGNFK----TSQDIRKRVKAGHVMTYAEHAHLERGATDRRKLLQYLIAYAVSPQNFVYVVWYVPGLLPSTFVKPHTIRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKGKPREEGSRQSKKMEKLERQREMVLDVLEADSKRQVFERFQEHMVVSAPASPDPENTAASNNKGTTKSKKPKPQKLKLPPASKGVPNAYIKTLGKGTGLSGWWHVSPGFYVRYCLSERLRDLGKMDDVLRTVSLESLSDSDLREACDARAINVGNRLGGDREPQDLRKSLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLLGLGLNCLESARQGRTAELPRKALAV-GKGGAI 477
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BLAST of mRNA_Ecto-sp13_S_contig5499.15743.1 vs. uniprot
Match: A0A6H5L818_9PHAE (LETM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L818_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.180e-57
Identity = 95/108 (87.96%), Postives = 102/108 (94.44%), Query Frame = 0 
Query:  334 VPNTYIKALGKGTGLSGWWHISPGFYVRYCLSERLRDLGRMDDVLRTVSLESLSDSDLREACDARAINVGNRLGGDREPRDLRKLLGEWLDLTSPEVAAGSKLGPDTV 441
            VPN YI+ALGKGTGLSGW HISPGFYVRYCLSERLRDLGRM ++LRTVSLESLSDSDLREACDARAINVGNRLGGDREP+DLRK LG WLDLTSPEV+AGSKL PD++
Sbjct:   63 VPNAYIEALGKGTGLSGWCHISPGFYVRYCLSERLRDLGRMIEILRTVSLESLSDSDLREACDARAINVGNRLGGDREPQDLRKPLGGWLDLTSPEVSAGSKLDPDSL 170
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5499.15743.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRP1_ECTSI1.830e-30692.32Letm1 RBD domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5L818_9PHAE1.180e-5787.96LETM1 domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011685LETM1-likePFAMPF07766LETM1coord: 352..429
e-value: 1.3E-9
score: 37.8
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..483
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.459
IPR033122Letm1 ribosome-binding domainPROSITEPS51758LETM1_RBDcoord: 253..470
score: 8.939

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5499contigEcto-sp13_S_contig5499:2143..6131 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5499.15743.1mRNA_Ecto-sp13_S_contig5499.15743.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5499 1819..6215 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5499.15743.1 ID=prot_Ecto-sp13_S_contig5499.15743.1|Name=mRNA_Ecto-sp13_S_contig5499.15743.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=484bp
MRLSEVLSVLNLAAVAQGGRGTAGWGSKSAAVMSDRRVFNDRHRQHQSRS
AVAFFGRRPRTTTPRVIGSSEAESAVDALSDASGAGAKAVRGSPPAADIS
SADSTGDSAAAPSVSAAQGIVNTFRDFWGHARHGTFALWGNFQARRHTSQ
DIRKRVKAGHVMTYAEHAHLERGATDRRKLLQYLIAYAVSPKNFVYVVWY
VPGLLPSTFVKPHTIRSKYHRLALERASATWDAVTGLEFRLLKAEEGFKG
KRREEGSRQSKKMEKLERQREMVLDVLEADGKRQVFERFQEHMVVPAPAS
PDPENAAASNNKGTKKSKKPKPQKLKLPPASKGVPNTYIKALGKGTGLSG
WWHISPGFYVRYCLSERLRDLGRMDDVLRTVSLESLSDSDLREACDARAI
NVGNRLGGDREPRDLRKLLGEWLDLTSPEVAAGSKLGPDTVFLPDRARLL
GLGLNCLESARQGRTAELPRKALAVVGKGGAIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011685LETM1
IPR033122LETM1_RBD