prot_Ecto-sp13_S_contig5498.15742.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5498.15742.1
Unique Nameprot_Ecto-sp13_S_contig5498.15742.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length648
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5498.15742.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI)

HSP 1 Score: 525 bits (1353), Expect = 8.070e-177
Identity = 454/633 (71.72%), Postives = 466/633 (73.62%), Query Frame = 0 
Query:   18 MMLDDAREE-DGXXGGNEGGGVKTKGKANVFAYTAAVSXXXXXXXXXXXXXXXXLMRQDGVSPNGITLRAALIALENASPPIETRGQPSPVSSPSPAPSNRPPPTVHSSAVETPSDEETRGRVGSSPPVVPWKVAVSLLESMARGEVEEEEGRRVDPAPRDFSAGLTAAWFGGAEWSSIVQILDLMHACAASAQPADNPPGFNRNLEGGRESVGGDADWGTDRGSSLGLVQAYNHVIRACGAAGGTEFVLALLQQMHRRGVPPDAASYSGAIIACDLAGMWREAVGLLDDMRQKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETMGERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYDQMVANMAADASASSA-DSEAEDRQRRRGESGVSTRTEGVSKGPGVLLPPPRATVAALTACARGGQWKKAVGILRDVQNNSGEVEVDRSGSGDRSSGNGGSRVWTYFGQASSLAFNAALVACAKGAEMEATEWREGGWREALEVLDMVGPCPDLTSYGLAITACSFANNVDACVGLLSEMLRRDMTPTLADYHSSLRACTACRR 648
            MMLDDAREE DG  GGNEGGG+KTKGKANVFAYTAAVS                                                                                  G+ G       W+ AV LL+                                         ILDLMHAC A AQPADNPPG N  LEGGRESVGGDADWG D GSS GLVQAYNHVIRACGAAGGTEFVLALLQ+MHRRGVPPDAASYSGAIIACDLAGMWREAVGLLDDMR+KTXXXXXXXXXXXXXXXXXXXXXXXXXXXX ETMGERG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYDQMVA+MAAD+SASSA DSEA   QRR+GESGVS+RTEGVSKGPGVLLPPPRATVAALTACARGGQW+KAVGILRDVQN SG +E DRSGSGD SS  G S  WTYFGQASSLAFNAALVACAKGAEMEA E REGGWREALEVLDMVGPCPDLT YGLAITAC FANNVDACVGLL EMLRRDMTPTLADYH SLRAC A RR
Sbjct:    1 MMLDDAREEEDGGDGGNEGGGMKTKGKANVFAYTAAVSAC--------------------------------------------------------------------------------GKAGR------WEEAVGLLD-----------------------------------------ILDLMHACEARAQPADNPPGINGALEGGRESVGGDADWGPDGGSSSGLVQAYNHVIRACGAAGGTEFVLALLQEMHRRGVPPDAASYSGAIIACDLAGMWREAVGLLDDMREKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETMGERGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYDQMVADMAADSSASSAGDSEAGAHQRRKGESGVSSRTEGVSKGPGVLLPPPRATVAALTACARGGQWEKAVGILRDVQNKSGGLEADRSGSGDGSSVGGRSGAWTYFGQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVLDMVGPCPDLTGYGLAITACGFANNVDACVGLLGEMLRRDMTPTLADYHGSLRACAARRR 506
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BLAST of mRNA_Ecto-sp13_S_contig5498.15742.1 vs. uniprot
Match: A0A6H5J961_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J961_9PHAE)

HSP 1 Score: 447 bits (1150), Expect = 1.650e-146
Identity = 431/643 (67.03%), Postives = 445/643 (69.21%), Query Frame = 0 
Query:    1 SIVIAACDRSGAWDVALMMLDDAREE-DGXXGGNEGGGVKTKGKANVFAYTAAVSXXXXXXXXXXXXXXXXLMRQDGVSPNGITLRAALIALENASPPIETRGQPSPVSSPSPAPSNRPPPTVHSSAVETPSDEETRGRVGSSPPVVPWKVAVSLLESMARGEVEEEEGRRVDPAPRDFSAGLTAAWFGGAEWSSIVQILDLMHACAASAQPADNPPGFNRNLEGGRESVGGDADWGTDRGSSLGLVQAYNHVIRACGAAGGTEFVLALLQQMHRRGVPPDAASYSGAIIACDLAGMWREAVGLLDDMRQKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETMGERGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYDQMVANMAADASASSADSEAEDRQRRRGESGVSTRTEGVSKGPGVLLPPPRATVAALTACARGGQWKKAVGILRDVQNNSGEVEVDRSGSGDRSSGNGGSRVWTYFGQASSLAFNAALVACAKGAEMEATEWREGGWREALEVLDMVGPCPDLTSYGLAITACSFANNVDACVGLLSEMLRRDMTPTLADYHSSLRA 642
            +IVIAACDRSGAWDVALMMLDDAREE DG  G NEG  VKTKGKANVFAYTAA  XXXXXXX                                                                                          V LL+                                         +LDLMHACAASAQPADNPPGFNR LEGGRESVGGDA WG D GSS GLVQAYNHVIRACGAAGG EFVLALLQ+MHRRGVPPDAASYSG IIACDLAGMWREAVGLLDDMRQ+TXXXXXXXXXXXXXXXXXXXXXXXXXX   ETMG+RGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYDQMVA+MAADASASSAD EAE  Q RRGESGVS+RTEGVSKGPGVLLPPPRATVAALTACARGGQW+KAVGILRDVQNN+G VEVDRSGSGD SSGNGGS V TYF QASSLAFNAALVACAKGAEMEA E REGGWREALEVLDMV         G  + A       DA   +L  M    + P    Y  +  A
Sbjct:   12 TIVIAACDRSGAWDVALMMLDDAREEEDGGDGENEGRRVKTKGKANVFAYTAAXXXXXXXXX--------------------------------------------------------------------------------------XXXXVGLLD-----------------------------------------VLDLMHACAASAQPADNPPGFNRTLEGGRESVGGDAHWGADGGSSSGLVQAYNHVIRACGAAGGAEFVLALLQEMHRRGVPPDAASYSGGIIACDLAGMWREAVGLLDDMRQETXXXXXXXXXXXXXXXXXXXXXXXXXXSIVETMGKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYDQMVADMAADASASSADYEAEAYQPRRGESGVSSRTEGVSKGPGVLLPPPRATVAALTACARGGQWEKAVGILRDVQNNTGRVEVDRSGSGDHSSGNGGSGVCTYFNQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVLDMVS--------GSLLGASIIRARDDAAREILDSMASEGVEPDARCYRFAAEA 519
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BLAST of mRNA_Ecto-sp13_S_contig5498.15742.1 vs. uniprot
Match: E1ZCN4_CHLVA (Smr domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZCN4_CHLVA)

HSP 1 Score: 58.2 bits (139), Expect = 5.420e-5
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 0 
Query:  249 YNHVIRACGAAGGTEFVLALLQQMHRRGVPPDAASYSGAIIACDLAGMWREAVGLLDDMRQK 310
            + HV+  C  AG  E VLA++Q+M  RG+PPD+ +++  ++A + AG WREA+     MR +
Sbjct:  473 WQHVLDVCAKAGKAEVVLAMMQEMEARGLPPDSVAHTILVMAHEKAGAWREALAAYRHMRDR 534
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5498.15742.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTF1_ECTSI8.070e-17771.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J961_9PHAE1.650e-14667.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
E1ZCN4_CHLVA5.420e-540.32Smr domain-containing protein n=1 Tax=Chlorella va... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 315..362
e-value: 1.0E-9
score: 38.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 374..432
e-value: 1.8E-4
score: 21.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 48..77
e-value: 2.8E-6
score: 27.2
coord: 600..628
e-value: 0.36
score: 11.2
coord: 248..277
e-value: 0.011
score: 15.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 248..281
e-value: 5.0E-5
score: 21.2
coord: 48..80
e-value: 2.2E-8
score: 31.8
coord: 318..352
e-value: 1.7E-6
score: 25.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 386..420
score: 8.835
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 245..279
score: 9.504
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 351..385
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 316..350
score: 11.553
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 280..315
score: 7.673
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 12.485
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 494..528
score: 5.546
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 597..631
score: 8.506
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 421..451
score: 7.224
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..26
score: 5.667
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 385..473
e-value: 8.5E-10
score: 40.2
coord: 490..648
e-value: 4.6E-11
score: 44.3
coord: 1..100
e-value: 5.4E-14
score: 53.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 239..384
e-value: 1.6E-36
score: 128.2
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 249..451

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5498contigEcto-sp13_S_contig5498:460..8656 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5498.15742.1mRNA_Ecto-sp13_S_contig5498.15742.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5498 460..8656 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5498.15742.1 ID=prot_Ecto-sp13_S_contig5498.15742.1|Name=mRNA_Ecto-sp13_S_contig5498.15742.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=648bp
SIVIAACDRSGAWDVALMMLDDAREEDGGAGGNEGGGVKTKGKANVFAYT
AAVSACGKAGRWEEAVGLLDLMRQDGVSPNGITLRAALIALENASPPIET
RGQPSPVSSPSPAPSNRPPPTVHSSAVETPSDEETRGRVGSSPPVVPWKV
AVSLLESMARGEVEEEEGRRVDPAPRDFSAGLTAAWFGGAEWSSIVQILD
LMHACAASAQPADNPPGFNRNLEGGRESVGGDADWGTDRGSSLGLVQAYN
HVIRACGAAGGTEFVLALLQQMHRRGVPPDAASYSGAIIACDLAGMWREA
VGLLDDMRQKTGVEPDLVCYNCAVKACGSSGEFEQALSILETMGERGVAP
DESTYSNAITACGNAGKAKRAVGLLQAMKDDGVPAGLVAHNAAIGACDKA
GECSLVLSVLKDMRSAGIRPDAISYAGAISSCDKAGEWRLTLGLYDQMVA
NMAADASASSADSEAEDRQRRRGESGVSTRTEGVSKGPGVLLPPPRATVA
ALTACARGGQWKKAVGILRDVQNNSGEVEVDRSGSGDRSSGNGGSRVWTY
FGQASSLAFNAALVACAKGAEMEATEWREGGWREALEVLDMVGPCPDLTS
YGLAITACSFANNVDACVGLLSEMLRRDMTPTLADYHSSLRACTACRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf