prot_Ecto-sp13_S_contig5490.15734.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5490.15734.1
Unique Nameprot_Ecto-sp13_S_contig5490.15734.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length87
Homology
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A6H5JKF8_9PHAE (Cnd1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKF8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.080e-27
Identity = 62/81 (76.54%), Postives = 62/81 (76.54%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAILLISQLLLQ 81
            GKLCLRDKALAKRSVNLFVRELDTAAAPAV                   DRHVAAMAACLQDPHPLVRRHAILLISQLLLQ
Sbjct:  223 GKLCLRDKALAKRSVNLFVRELDTAAAPAVXXXXXXXXXXXXXXXXXXXDRHVAAMAACLQDPHPLVRRHAILLISQLLLQ 303          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: D7FP86_ECTSI (Cnd1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP86_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 4.140e-27
Identity = 62/81 (76.54%), Postives = 62/81 (76.54%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAILLISQLLLQ 81
            GKLCLRDKALAKRSVNLFVRELDTAAAPAV                   DRHVAAMAACLQDPHPLVRRHAILLISQLLLQ
Sbjct: 1067 GKLCLRDKALAKRSVNLFVRELDTAAAPAVXXXXXXXXXXXXXXXXXXXDRHVAAMAACLQDPHPLVRRHAILLISQLLLQ 1147          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A482RAG2_9EURY (Cnd1 domain-containing protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A482RAG2_9EURY)

HSP 1 Score: 106 bits (264), Expect = 8.060e-25
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAP-AVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAILLISQLLLQ 81
            GKLCLRD ALAK+ V++FVR+L    AP AVR+N L VLGDL VRYTA+VD+HV  +AAC  DPHPLVRRHAI+L++QL+++
Sbjct:  617 GKLCLRDAALAKKYVSVFVRDLSPLCAPPAVRNNILFVLGDLTVRYTALVDQHVPIIAACCADPHPLVRRHAIILLAQLVVE 698          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A662Y756_9STRA (Cnd1 domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y756_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.300e-20
Identity = 45/81 (55.56%), Postives = 61/81 (75.31%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAILLISQLLLQ 81
            GKLCLRD+ LAK+ V +F+REL T     +RSN L++LGDLC+RYT++VD ++  +A  L D  PL+RR A+LL SQL+LQ
Sbjct:  209 GKLCLRDQNLAKKCVTMFIRELRTCQEQDIRSNILLILGDLCIRYTSLVDAYIPTIALSLLDQSPLLRRSALLLFSQLILQ 289          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A5D6XUH5_9STRA (Cnd1 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUH5_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.400e-20
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAILLISQLLLQ 81
            GKLCLRD+ LAK  + + +REL T A   +RSN L++LGDLC+RYT++VD +V  +A  L D  PL+RR A+LL SQL+LQ
Sbjct: 1042 GKLCLRDQELAKSCITMLIRELRTCAVQDIRSNILLILGDLCIRYTSLVDAYVPTIALSLTDESPLIRRTALLLFSQLILQ 1122          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A7S2L2Y1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L2Y1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.740e-20
Identity = 53/101 (52.48%), Postives = 63/101 (62.38%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAA---PAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQD-----------------PHPLVRRHAILLISQLLLQ 81
            GKLC+RD  LAK  VNLF REL +      P+V+SNAL+VLGDLCVRYT +VD  + AMAACLQ                     LVR+HA+LL+S LLLQ
Sbjct:   33 GKLCIRDAKLAKNCVNLFARELYSEEGHCNPSVQSNALLVLGDLCVRYTNIVDLQLPAMAACLQSGIKNLGIDSSATNDDMQKSALVRKHAVLLLSSLLLQ 133          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A8K1CBU6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBU6_PYTOL)

HSP 1 Score: 91.7 bits (226), Expect = 1.120e-19
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAILLISQLLLQ 81
            GK+CLRD+ LAK  + + +REL T  +  +RSN LV+LGDLC+RYTA+VD +V  +A    D  PL+RR+A+LL SQL+LQ
Sbjct:  985 GKMCLRDQDLAKSCITMLIRELRTCKSADIRSNILVILGDLCIRYTALVDPYVPTIALSFTDESPLIRRNALLLFSQLILQ 1065          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A7S1HFU5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HFU5_HEMAN)

HSP 1 Score: 89.4 bits (220), Expect = 1.380e-19
Identity = 40/72 (55.56%), Postives = 56/72 (77.78%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAI 72
            GK+CL D  LAK+SVNLF+REL    +P +R+N LVVL DLCVRYT+++D H+  +A CL+D + +VR+HA+
Sbjct:   47 GKICLSDATLAKKSVNLFLRELSCTPSPVLRNNVLVVLSDLCVRYTSLIDPHMPMVAMCLRDSNDVVRQHAL 118          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A0D2VFV6_CAPO3 (Non-SMC condensin II complex subunit D3 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VFV6_CAPO3)

HSP 1 Score: 90.9 bits (224), Expect = 2.080e-19
Identity = 42/79 (53.16%), Postives = 62/79 (78.48%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAILLISQLL 79
            GK+CLR++ +AK S+    REL+T+ +  +R+N +VV+ DLCVRYTA+VDR++  +AACL+DP PLVRR  I L+++LL
Sbjct:  968 GKICLRNETMAKASIAAMARELETSDSEIIRNNVVVVMCDLCVRYTALVDRYIPNIAACLRDPSPLVRRQTITLLTRLL 1046          
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Match: A0A0B7B2K0_9EUPU (Cnd1 domain-containing protein n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7B2K0_9EUPU)

HSP 1 Score: 90.1 bits (222), Expect = 3.670e-19
Identity = 39/79 (49.37%), Postives = 64/79 (81.01%), Query Frame = 0
Query:    1 GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVDRHVAAMAACLQDPHPLVRRHAILLISQLL 79
            GKLCL D++LAK+++    REL+ + +PAVR+N ++++GDL +RYT +VDR+V  +AACL+DP PLVR++ + ++++LL
Sbjct:  254 GKLCLVDESLAKKAIAALARELEESDSPAVRNNVVIIMGDLTIRYTTLVDRYVTNIAACLKDPSPLVRKNTLTILTRLL 332          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5490.15734.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKF8_9PHAE4.080e-2776.54Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FP86_ECTSI4.140e-2776.54Cnd1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A482RAG2_9EURY8.060e-2565.85Cnd1 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A662Y756_9STRA4.300e-2055.56Cnd1 domain-containing protein (Fragment) n=2 Tax=... [more]
A0A5D6XUH5_9STRA4.400e-2055.56Cnd1 domain-containing protein n=1 Tax=Pythium bra... [more]
A0A7S2L2Y1_9STRA7.740e-2052.48Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A8K1CBU6_PYTOL1.120e-1954.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S1HFU5_HEMAN1.380e-1955.56Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0D2VFV6_CAPO32.080e-1953.16Non-SMC condensin II complex subunit D3 n=1 Tax=Ca... [more]
A0A0B7B2K0_9EUPU3.670e-1949.37Cnd1 domain-containing protein n=1 Tax=Arion vulga... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 3..83
e-value: 1.0E-6
score: 29.5
IPR032682Condensin complex subunit 1, C-terminalPFAMPF12717Cnd1coord: 29..80
e-value: 5.6E-12
score: 46.0
NoneNo IPR availablePANTHERPTHR14222:SF1CONDENSIN-2 COMPLEX SUBUNIT D3coord: 1..81
IPR026971Condensin subunit 1/Condensin-2 complex subunit D3PANTHERPTHR14222CONDENSINcoord: 1..81
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 2..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5490contigEcto-sp13_S_contig5490:249..1257 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5490.15734.1mRNA_Ecto-sp13_S_contig5490.15734.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5490 249..1257 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5490.15734.1 ID=prot_Ecto-sp13_S_contig5490.15734.1|Name=mRNA_Ecto-sp13_S_contig5490.15734.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
GKLCLRDKALAKRSVNLFVRELDTAAAPAVRSNALVVLGDLCVRYTAMVD
RHVAAMAACLQDPHPLVRRHAILLISQLLLQVSLWC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR032682Cnd1_C
IPR026971CND1/NCAPD3
IPR016024ARM-type_fold