prot_Ecto-sp13_S_contig54887.15732.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig54887.15732.1
Unique Nameprot_Ecto-sp13_S_contig54887.15732.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length203
Homology
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BLAST of mRNA_Ecto-sp13_S_contig54887.15732.1 vs. uniprot
Match: A0A3A1NHT7_9FLAO (Collagen-like protein n=1 Tax=Muricauda maritima TaxID=2306998 RepID=A0A3A1NHT7_9FLAO)

HSP 1 Score: 53.1 bits (126), Expect = 4.800e-5
Identity = 36/121 (29.75%), Postives = 57/121 (47.11%), Query Frame = 0 
Query:   67 IGLEKFAEYGSIDLRVQGIRPDTVAFDYQTELEFISPE--------LNDNNFQDDDPDHEFYFLRLLDAPNIDEINGAAIS--LDVLDAGLASQSFSFEIEFSEFAIFADDLTYITLYDSY 177
            IG ++  +YG I L+++G R D  AF   T  +F   +        L D+    +D  + F   R   AP+ D       S  ++++D G  +Q F F  + S +A+  DD  Y TL +SY
Sbjct:   60 IGFDELTQYGYITLKMEGTRADNEAFQDSTSFKFTPADGINLWQYSLVDSYMVGEDQVYTFTVARFFSAPD-DVFQETTFSTYMEIIDIGQTTQDFYFSYDISSYAVVGDDHKYFTLSNSY 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig54887.15732.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A3A1NHT7_9FLAO4.800e-529.75Collagen-like protein n=1 Tax=Muricauda maritima T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..203
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..25
score: 7.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..24
score: 0.657

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig54887contigEcto-sp13_S_contig54887:322..930 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig54887.15732.1mRNA_Ecto-sp13_S_contig54887.15732.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig54887 322..930 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig54887.15732.1 ID=prot_Ecto-sp13_S_contig54887.15732.1|Name=mRNA_Ecto-sp13_S_contig54887.15732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MKNKVLRILGTASLALFISGSVISCSVEDGIDGINGVDGIDGEDGVNGQD
GSDGQDGVNGQDGVDAIGLEKFAEYGSIDLRVQGIRPDTVAFDYQTELEF
ISPELNDNNFQDDDPDHEFYFLRLLDAPNIDEINGAAISLDVLDAGLASQ
SFSFEIEFSEFAIFADDLTYITLYDSYYGSINTNDRVSNNYGIATTFAIT
DYS
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