prot_Ecto-sp13_S_contig5481.15722.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5481.15722.1
Unique Nameprot_Ecto-sp13_S_contig5481.15722.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length168
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5481.15722.1 vs. uniprot
Match: A0A6H5KN98_9PHAE (PAS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN98_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 6.050e-107
Identity = 160/167 (95.81%), Postives = 162/167 (97.01%), Query Frame = 0 
Query:    1 MQPSPRSTPARGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTTIGDSEPDSGKLVKLRISCGSISCSASMSMVIGSQGLVVVTRLYDN 167
            MQP+PRSTP RGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSF CENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKT IGDSEP SGKLVKLR+SCGSISCSASMSMVIGSQGLVVVTRLY N
Sbjct:    1 MQPTPRSTPTRGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFACENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTNIGDSEPGSGKLVKLRVSCGSISCSASMSMVIGSQGLVVVTRLYGN 167
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BLAST of mRNA_Ecto-sp13_S_contig5481.15722.1 vs. uniprot
Match: A0A6H5KRF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF4_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.720e-35
Identity = 77/163 (47.24%), Postives = 100/163 (61.35%), Query Frame = 0 
Query:   10 ARGATDMEQKR-RIANRIHCRETRERKRRAEALLKEEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEA----LNEVLANKTTIGDSEPDSGKLVKLRISCGSISCSASMSMVIGSQGLVVVTRLYDN 167
            ARGA+    +R R ANRIHC+ETR+R+R  E  L E VE+L L +++VE GPDLFS H    DAPFS++C+N+  +LQ+ PE  VG+ L SIVD  +A  L  A    LNE                 +V +RI+ G I C ASMS+  GS GL+VVTRLY +
Sbjct:   14 ARGASQKSDERSREANRIHCKETRDRRRERERALSEHVELLKLCQSIVEHGPDLFSLHNATIDAPFSYLCDNFTMRLQMPPEAMVGRSLLSIVDEREALSLRNAIFQVLNEAQHXXXXXXXXXXXXXAVVHVRIAHGQIFCEASMSIACGSHGLIVVTRLYSS 176
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BLAST of mRNA_Ecto-sp13_S_contig5481.15722.1 vs. uniprot
Match: D8LCA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCA0_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 4.280e-13
Identity = 38/87 (43.68%), Postives = 53/87 (60.92%), Query Frame = 0 
Query:   44 EEVEILSLYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASIVDPEDAPILAEALNEVLANKTTIGDSEPDS 130
            +E ++L +Y+ +VE GPDLFS H    DAPFSFV ++   + QL  E  +GKPL ++VDP+D  +L  AL  VL    T G    +S
Sbjct:    8 QEEDVLEVYRDIVENGPDLFSLHGTTLDAPFSFVSKSLNLKFQLPSEYLLGKPLKTVVDPDDWGVLTTALLAVLGPNPTSGGKSGNS 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5481.15722.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KN98_9PHAE6.050e-10795.81PAS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KRF4_9PHAE1.720e-3547.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCA0_ECTSI4.280e-1343.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.450.20coord: 49..128
e-value: 2.6E-6
score: 29.0
IPR000014PAS domainPROSITEPS50112PAScoord: 85..120
score: 8.687
IPR035965PAS domain superfamilySUPERFAMILY55785PYP-like sensor domain (PAS domain)coord: 33..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5481contigEcto-sp13_S_contig5481:4522..9052 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5481.15722.1mRNA_Ecto-sp13_S_contig5481.15722.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5481 3980..9135 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5481.15722.1 ID=prot_Ecto-sp13_S_contig5481.15722.1|Name=mRNA_Ecto-sp13_S_contig5481.15722.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=168bp
MQPSPRSTPARGATDMEQKRRIANRIHCRETRERKRRAEALLKEEVEILS
LYKALVEEGPDLFSCHRVEPDAPFSFVCENYFHQLQLAPEDAVGKPLASI
VDPEDAPILAEALNEVLANKTTIGDSEPDSGKLVKLRISCGSISCSASMS
MVIGSQGLVVVTRLYDN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000014PAS
IPR035965PAS-like_dom_sf