prot_Ecto-sp13_S_contig5476.15712.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5476.15712.1
Unique Nameprot_Ecto-sp13_S_contig5476.15712.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length235
Homology
BLAST of mRNA_Ecto-sp13_S_contig5476.15712.1 vs. uniprot
Match: D8LNW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNW7_ECTSI)

HSP 1 Score: 421 bits (1082), Expect = 3.500e-148
Identity = 202/234 (86.32%), Postives = 216/234 (92.31%), Query Frame = 0
Query:    1 MSMVYRQVEQGEPIDEARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILASSDLFFNGIWAAFYSKDDVEKMLQTAVAILQSVYDKDCKDAPVQTEDCLQLSHNIEQAEFNLELFDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALSAKIYLWTWLPKFFVGVVARYTLRAEMKQYGIDKSDGPGVVINELLSVVFLLYYVKVAWSFHQRLKARSGNSSSPSGGVESIQLA 234
            MSMVYRQVEQ EP+D ARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILA++DLF NGIW+ FYS+  +EKML  A+ ILQSVYDKDCKDAPVQTEDCLQLSHNIEQAEF +ELFDNLPVIVYVEA+IAMLAGAVGLFAVFKSNALSAKIYLW WLP+FFVG+VA+YTLRA MKQYGID SDGPGVVI  L+ VV  LY+VKVAWSFHQRLKARSGNSSSPSGGVESIQLA
Sbjct:    1 MSMVYRQVEQEEPVDGARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILAANDLFLNGIWSTFYSRSHIEKMLHAAIEILQSVYDKDCKDAPVQTEDCLQLSHNIEQAEFEVELFDNLPVIVYVEAIIAMLAGAVGLFAVFKSNALSAKIYLWMWLPRFFVGLVAKYTLRAVMKQYGIDNSDGPGVVIGHLVDVVVFLYFVKVAWSFHQRLKARSGNSSSPSGGVESIQLA 234          
BLAST of mRNA_Ecto-sp13_S_contig5476.15712.1 vs. uniprot
Match: A0A6H5JV23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV23_9PHAE)

HSP 1 Score: 320 bits (821), Expect = 8.260e-109
Identity = 156/196 (79.59%), Postives = 177/196 (90.31%), Query Frame = 0
Query:   38 SCCFCCSLRAGVGILASSDLFFNGIWAAFYSKDDVEKMLQTAVAILQSVYDKDCKDAPVQTEDCLQLSHNIEQAEFNLELFDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALSAKIYLWTWLPKFFVGVVARYTLRAEMKQYGIDKSDGPGVVINELLSVVFLLYYVKVAWSFHQRLKARSGNSSSPSGGVESIQL 233
            +CCFCCSLRAGVGILA++DL   GIW AFY++  VEKMLQTA+AI+QS+YD DCKDAPVQTEDCL+ SH IEQ EF +ELF+NLPVIVYVEAVIAM+AGAVGLFAVFKSNALSAKIYLWTWLP+FFVG+VARYT+RAEMKQYGID ++ PGVVINEL++ +FLLYYVKV WSFHQRLKARSG SSS SG VE I+L
Sbjct:   13 TCCFCCSLRAGVGILAANDLLHTGIWTAFYARGYVEKMLQTAIAIVQSLYDMDCKDAPVQTEDCLKRSHEIEQMEFQVELFENLPVIVYVEAVIAMIAGAVGLFAVFKSNALSAKIYLWTWLPRFFVGLVARYTMRAEMKQYGIDNNNEPGVVINELVTAIFLLYYVKVTWSFHQRLKARSGISSSTSGDVEGIRL 208          
BLAST of mRNA_Ecto-sp13_S_contig5476.15712.1 vs. uniprot
Match: D8LNW6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNW6_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 9.390e-31
Identity = 82/231 (35.50%), Postives = 124/231 (53.68%), Query Frame = 0
Query:    4 VYRQVEQGEPIDE-ARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVGILASSDLFFNGIWAAFY-SKDDVEKMLQTAVAILQSVYDKDCKDAPVQTEDCLQLSHNIEQAEFNLELFDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALSAKIYLWTWLPKFFVGVVARYTLRAEMKQYGIDKSDGPGVVINELLSVVFLLYYVKVAWSFH---QRLKARSGNSSSPSGGVE 229
            V  + + G P+ E  RFNG GGVR+ WWWQPGPVDS     SL AGV +LA+ D+   G    +Y S    +  L+  +A  +  Y ++C+D    + DCL  +  I     +L   ++L V   ++ VIA + G VGL AVF  +AL+A+ YLW+W P+  + +V     R   ++Y +    G  VV N +  V+ L Y +KVAWS+    +R    +  ++  SG +E
Sbjct:   14 VGSEFDGGRPLGERVRFNGVGGVRKDWWWQPGPVDSXXXXFSLAAGVAVLAALDIIVLGAMRLYYVSFVTGDAGLKQLLAGFEKKYAEECEDVAEASADCLAQASII----LSLNKTNDLYVPAVLQGVIAAIFGFVGLRAVFAHDALAARAYLWSWPPRIVLTLVELVMQRIRFERYDMGFLWGFTVVWN-IPRVLILAYCLKVAWSYWVVVRRNNRAAATAADTSGSIE 239          
BLAST of mRNA_Ecto-sp13_S_contig5476.15712.1 vs. uniprot
Match: D8LKG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG8_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.630e-10
Identity = 57/206 (27.67%), Postives = 91/206 (44.17%), Query Frame = 0
Query:   24 GVRRQWWWQPGPVDSCCFCCSLRAGVGILASSDLFFNGIWAAFYSKDDVEKMLQTAVAILQSVYDKDCKDAPVQTEDCLQLSHNIEQAEFNLELFDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALSAKIYLWTWLPKFFVGVVARYTLRAEMKQYGIDKSDGPGVVINELLSVVFLLYYVKVAWSFHQRLKARSGNSSSPSGGVE 229
            G R++WWWQPGPVD+  FC  L  GVG+ A  +L +  +  A              V   +  + +DC+        C +L  +I      L L ++  V   + A + ++ G +GL A +  +A +AK  LW     F +  V       +   YG         V   LL V+ ++Y  KV WS+H  L  ++  ++  +G VE
Sbjct:   40 GRRKEWWWQPGPVDTVGFCWDLDMGVGLNAVGELVYGILAFASIGHRLAADTSTVVVQEKEEEFARDCEGLEQMPYKCERLIGSI----LELTLANDTLVPNVLAAAVLLMLGWLGLRAWWCFDARAAKFNLWLRPLMFLMSAVVMAIRVTKEMSYGRHPV-WDLYVFWLLLMVLSMMYSSKVMWSYHIFLLKKTSRATREAGMVE 240          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5476.15712.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LNW7_ECTSI3.500e-14886.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV23_9PHAE8.260e-10979.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNW6_ECTSI9.390e-3135.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LKG8_ECTSI1.630e-1027.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 153..170
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 145..152
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 209..234
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..122
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 190..208
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 171..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 123..144
NoneNo IPR availableTMHMMTMhelixcoord: 45..67
NoneNo IPR availableTMHMMTMhelixcoord: 151..173
NoneNo IPR availableTMHMMTMhelixcoord: 188..210
NoneNo IPR availableTMHMMTMhelixcoord: 122..144

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5476contigEcto-sp13_S_contig5476:384..5893 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5476.15712.1mRNA_Ecto-sp13_S_contig5476.15712.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5476 2..7063 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5476.15712.1 ID=prot_Ecto-sp13_S_contig5476.15712.1|Name=mRNA_Ecto-sp13_S_contig5476.15712.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=235bp
MSMVYRQVEQGEPIDEARFNGEGGVRRQWWWQPGPVDSCCFCCSLRAGVG
ILASSDLFFNGIWAAFYSKDDVEKMLQTAVAILQSVYDKDCKDAPVQTED
CLQLSHNIEQAEFNLELFDNLPVIVYVEAVIAMLAGAVGLFAVFKSNALS
AKIYLWTWLPKFFVGVVARYTLRAEMKQYGIDKSDGPGVVINELLSVVFL
LYYVKVAWSFHQRLKARSGNSSSPSGGVESIQLA*
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