prot_Ecto-sp13_S_contig5472.15706.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5472.15706.1
Unique Nameprot_Ecto-sp13_S_contig5472.15706.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length370
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5472.15706.1 vs. uniprot
Match: A0A6H5JMN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN8_9PHAE)

HSP 1 Score: 687 bits (1774), Expect = 3.980e-249
Identity = 351/369 (95.12%), Postives = 351/369 (95.12%), Query Frame = 0 
Query:    1 MKPSCSMLAAAVVLTVRSSVSFHCCSWRAKQPRHHQLKQQHKQQQFFGLMHRMHREQQHSTSRWRRRSSLQLSGVGSTVAXXXXXXXXXXXGGEDGIRELTREESEAAILSFADSAKRHCRTQSEYDDHIELLQGMRSWGQPLTQKRVGCKRLVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEEMQGENPVRSD 369
            MKPSCSMLAA VVLT RSSVSFHCCSWRAKQPRHHQLKQQHK QQFF  MHRM REQQHSTSRWRRRSSLQLSGVGSTVA           GGEDGIRELTREESEAAILSFADSAKRH RTQSEYDDHIELLQGMRSWGQPLTQKRVGCKRLVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEEMQGENPVRSD
Sbjct:    1 MKPSCSMLAAVVVLTARSSVSFHCCSWRAKQPRHHQLKQQHKHQQFFAPMHRMDREQQHSTSRWRRRSSLQLSGVGSTVAPPPTTQTTARGGGEDGIRELTREESEAAILSFADSAKRHSRTQSEYDDHIELLQGMRSWGQPLTQKRVGCKRLVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEEMQGENPVRSD 369
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BLAST of mRNA_Ecto-sp13_S_contig5472.15706.1 vs. uniprot
Match: D8LH52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH52_ECTSI)

HSP 1 Score: 550 bits (1417), Expect = 2.180e-195
Identity = 274/278 (98.56%), Postives = 277/278 (99.64%), Query Frame = 0 
Query:   92 GGEDGIRELTREESEAAILSFADSAKRHCRTQSEYDDHIELLQGMRSWGQPLTQKRVGCKRLVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEEMQGENPVRSD 369
            GGEDGIRELTREESEAAILSFADSAKRHCRTQS+YDDHIELLQGMRSWGQPLTQKRVGCKR+VLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLM VPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEE+QGENPVRSD
Sbjct:   52 GGEDGIRELTREESEAAILSFADSAKRHCRTQSDYDDHIELLQGMRSWGQPLTQKRVGCKRVVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMTVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAVNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEEIQGENPVRSD 329
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BLAST of mRNA_Ecto-sp13_S_contig5472.15706.1 vs. uniprot
Match: A0A835YSI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI1_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.700e-68
Identity = 121/276 (43.84%), Postives = 177/276 (64.13%), Query Frame = 0 
Query:   92 GGEDGIRELTREESEAAILSFADSAKRHCRTQSEYDDHIELLQGMRSWGQPLTQ-KRVGCKRLVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKVGFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQDPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHAV-NEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIERRLASRLLEEMQGENP 365
            G  DG+R +T  + + A+ ++   A ++C++ +E  + +E++  MR W     + KR+GCK++ LG+++ G L+ +AA Q+ W  G+  RDVR+ + L+A+NP +D R VGFE ++ +K+ G  NALLLD S L  VP LRVF L S +TLD DPE V  DP    Y S V+R+C+VLD+IP WADLGP+W+EG     V F+FRKR   + NEFE++   P AG +TGSGTVGGARVI + E +   +I G  K      + ++  +EE  GE+P
Sbjct:   12 GDGDGLRPMTAAQVKEALANYKAGAFKYCQSSAEQKEQLEMISMMREWADTFEKYKRIGCKKMTLGSYRAGRLLSVAALQIEWR-GFPERDVRMVVRLLALNPMHDKRIVGFEMMESLKALGRDNALLLDCSALREVPCLRVFALGSIRTLDADPELV--DPRKLFYKSHVKRTCFVLDNIPEWADLGPFWFEGTTHDGVSFWFRKRTPMLLNEFEISWDHPKAGNATGSGTVGGARVIGIGELDQCKDIKGWAKPE----KSSTMHMEEDVGEDP 280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5472.15706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JMN8_9PHAE3.980e-24995.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH52_ECTSI2.180e-19598.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSI1_9STRA1.700e-6843.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..369
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.576

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5472contigEcto-sp13_S_contig5472:755..6926 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5472.15706.1mRNA_Ecto-sp13_S_contig5472.15706.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5472 639..8052 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5472.15706.1 ID=prot_Ecto-sp13_S_contig5472.15706.1|Name=mRNA_Ecto-sp13_S_contig5472.15706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=370bp
MKPSCSMLAAAVVLTVRSSVSFHCCSWRAKQPRHHQLKQQHKQQQFFGLM
HRMHREQQHSTSRWRRRSSLQLSGVGSTVAPPPTTQTTARGGGEDGIREL
TREESEAAILSFADSAKRHCRTQSEYDDHIELLQGMRSWGQPLTQKRVGC
KRLVLGNFKRGNLVCIAAAQVVWSTGYLSRDVRLSLALIAVNPKYDMRKV
GFETIKRMKSFGMQNALLLDLSPLMAVPRLRVFCLESTQTLDEDPEGVFQ
DPLVQQYNSRVRRSCYVLDDIPTWADLGPYWYEGVLPRSVRFFFRKRFHA
VNEFEVTLQRPGAGLSTGSGTVGGARVIAMDEAEAATEIPGHGKVREIER
RLASRLLEEMQGENPVRSD*
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