prot_Ecto-sp13_S_contig200.6521.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig200.6521.1
Unique Nameprot_Ecto-sp13_S_contig200.6521.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length379
Homology
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: D8LK53_ECTSI (HTH La-type RNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK53_ECTSI)

HSP 1 Score: 592 bits (1525), Expect = 6.740e-211
Identity = 343/378 (90.74%), Postives = 347/378 (91.80%), Query Frame = 0
Query:    1 MSSGSSGNAKPSASTPVKWTLVEAVAETPEGRRHKHQSHAGQRKGPGARGSGYTGSWGQGRDGGXXXXXXXXXXXXNRGQRRGGGAGSRNNQGQXXXXXXXXGYVGGATYYPTQANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPTVSEADRVNGTEPGGIPAQTTQDAASAGDVPDAEDTQTSLKEDSTAGAEKKEGESVTGPVAEEEQQSSSEKDQVSHEDGAKTELTPLAPAWTPVGASTDAVQEQSSPPGSPTAVPPPDQKAPEEETGRNDGERETDEPAVPTAELKP 378
            MSSGSSGNAKPSASTPVKWTLVEAVAETPEGRRHKHQSHAGQRKGPGARGSGYTG+WGQGRDG XXXXXXXXXXXXNRGQRRGGGAGSRNNQGQXXXXXXXXGYVGGATYYPTQANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDP VSEADRVNGTEP GIPAQTTQDAASAGDVP AEDTQTSLKEDSTAGAEKKEG+SVTGPVAEEEQQ SSEK QVSHED AKTELTPLAPAWTPVGASTDAVQEQS                       +DGER TD+PAVPTAELKP
Sbjct:    1 MSSGSSGNAKPSASTPVKWTLVEAVAETPEGRRHKHQSHAGQRKGPGARGSGYTGNWGQGRDGXXXXXXXXXXXXXNRGQRRGGGAGSRNNQGQXXXXXXXXGYVGGATYYPTQANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPAVSEADRVNGTEPSGIPAQTTQDAASAGDVPGAEDTQTSLKEDSTAGAEKKEGDSVTGPVAEEEQQRSSEKGQVSHEDAAKTELTPLAPAWTPVGASTDAVQEQSXXXXXXXXXXXXXXXXXXXXXXXDDGERVTDKPAVPTAELKP 378          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: A0A836CAE4_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE4_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.880e-34
Identity = 74/144 (51.39%), Postives = 93/144 (64.58%), Query Frame = 0
Query:  124 EQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPTVSEADRVNGTEPGGIPAQTTQDAASAGDVPDAEDT 267
            E K      AV+Q+E+YF+V NLC D+FMRSYMD EGYIP+AFVANFPG A  G E  DI   + +S+ L+ D  NETMR+REGW++W+LPN A+G  GVPRYIK+    SE +         I AQ    AA+  + P AE T
Sbjct:    5 EAKKMAAEYAVKQMEWYFSVHNLCSDVFMRSYMDTEGYIPVAFVANFPGCASLGAEFTDILEALKSSEMLEFDEANETMRLREGWDMWILPN-ASGGLGVPRYIKL----SEDEAAK------IAAQQEAQAAAKSEEPSAEAT 137          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: A0A7S1UC17_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UC17_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.880e-25
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 0
Query:  133 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKV 229
            AVR IE  F+  +LC D ++R  MD EGYIP+AFVAN+P VA++G   ED+ +GI +S+ L++D ENETMR+RE W+ WL P+   G  G PRY+KV
Sbjct:   85 AVRAIEMTFSPNHLCTDEWLRQNMDVEGYIPVAFVANYPHVAQYGALYEDLLSGIASSEILELDAENETMRLRENWQQWLFPD-GKGGMGCPRYVKV 180          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: A0A7R9U3W9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3W9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.250e-24
Identity = 57/124 (45.97%), Postives = 77/124 (62.10%), Query Frame = 0
Query:  108 ATYYPTQANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDP 231
            A Y P  A V   +  E +  +   AVR IE  F+  +LC D F+R +MD  GY+P+A VAN+  VA++G   ED+ AG+  S+ LQ+D ENET+R+RE WE WL P+   G  G PRY+KV P
Sbjct:  210 AAYGP--AGVFVPASNENRTMLAASAVRAIEMTFSPNHLCTDEFLRQHMDVAGYVPVALVANYSHVAQYGALYEDLLAGLANSELLQLDAENETVRLRENWEQWLFPD-GKGGMGCPRYVKVSP 330          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: A0A2P4X4J6_9STRA (La domain family n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X4J6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.340e-23
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 0
Query:  133 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPTVSEAD 237
            A  QIEFYFT +NL RDIF+R +MD +GY+P+AFV +F  V     + E +   +  S+T+++D +NE +R+REGW+ W+ PN A G  GVPRYIKV      AD
Sbjct:  121 AKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETIELDEQNEKIRLREGWQKWVWPN-AEGGYGVPRYIKVAENEEPAD 224          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: A0A662WMH8_9STRA (HTH La-type RNA-binding domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMH8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.080e-23
Identity = 50/105 (47.62%), Postives = 70/105 (66.67%), Query Frame = 0
Query:  133 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPTVSEAD 237
            A  QIEFYFT +NL RDIFMR +MD +G++P+AFV +F  V     + E +   +  S+T+++D +NE +R+R+GW+ W+ PN A G  GVPRYIK     S AD
Sbjct:   35 AKNQIEFYFTSDNLVRDIFMRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEVMKHSETVELDEQNEKIRLRDGWQKWVWPN-AEGGYGVPRYIKAGEEPSPAD 138          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: K8ZBX0_NANGC (Rna-binding la domain protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8ZBX0_NANGC)

HSP 1 Score: 108 bits (269), Expect = 2.110e-23
Identity = 49/109 (44.95%), Postives = 75/109 (68.81%), Query Frame = 0
Query:  124 EQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGIL-ASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDP 231
            E + Y+ ++AV+QIE+YF+V+NLCRD ++R+++DEEG++P+A + NFP VA F  +  +I   +  AS  L+ D  NET+R++E    WLLPN   G  G PR++K  P
Sbjct:   54 EAREYLASMAVQQIEYYFSVDNLCRDTYLRAHLDEEGWVPLALICNFPTVASFAADYSEIVKTLQEASSVLEYDEANETLRLKEKATAWLLPN-GRGGMGCPRWLKQAP 161          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: A0A7S2WWB5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWB5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 2.520e-23
Identity = 55/121 (45.45%), Postives = 78/121 (64.46%), Query Frame = 0
Query:  124 EQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPTVSEADRVNGTEP 244
            E   Y+  LAV+Q+E+ F+V+NLC+D F+RS++D EGY+PIA V NFP +A  G    DI A + +S  L+VD  NET+R R+    W+ PN A      PR+IK+D T SE  ++ G+ P
Sbjct:   30 EDCRYLAALAVQQMEYLFSVQNLCQDTFLRSHLDSEGYMPIAIVCNFPHIAGIGAYYPDIIAALKSSKALEVDDTNETVRPRDKPHQWVFPNPA------PRWIKLD-TGSEGRKLQGSGP 143          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: V9E4H7_PHYPR (HTH La-type RNA-binding domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=V9E4H7_PHYPR)

HSP 1 Score: 106 bits (264), Expect = 4.290e-23
Identity = 67/161 (41.61%), Postives = 89/161 (55.28%), Query Frame = 0
Query:   78 RGQRRGGGAGSRNNQGQXXXXXXXXGYVGGATYYPT-QANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPTVSEAD 237
            RG R GG  G R  QG          YV G  Y PT    V A+            A  QIEFYFT +NL RDIF+R +MD +GY+P+AFV +F  V     + E +   +  S+T+++D +NE +R+R+GWE W+ PN A G  GVPRYIK+    + AD
Sbjct:   89 RGPRSGGRIGGRRPQGDSNGT-----YVNGV-YVPTPDVKVTAQ-----------WAKNQIEFYFTSDNLVRDIFLRQHMDVDGYVPLAFVGSFQAVYSVHQDYESLLEAMKNSETVELDEQNEKIRLRDGWEKWVWPN-AVGGYGVPRYIKLADGEAPAD 231          
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Match: A0A662WKG7_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WKG7_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.420e-23
Identity = 50/105 (47.62%), Postives = 71/105 (67.62%), Query Frame = 0
Query:  133 AVRQIEFYFTVENLCRDIFMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENETMRMREGWEVWLLPNQATGKQGVPRYIKVDPTVSEAD 237
            A  QIEFYFT +NL RDIFMR +MD +G++P+AFV +F  V     + E +   +  S+T+++D +NE +R+R+GW+ W+ PN A G  GVPRYIK +   S AD
Sbjct:  149 AKNQIEFYFTSDNLVRDIFMRQHMDVDGFVPLAFVGSFQAVYSVHQDYESLLEVMKHSETVELDEQNEKIRLRDGWQKWVWPN-AEGGYGVPRYIKAEEEPSSAD 252          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig200.6521.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK53_ECTSI6.740e-21190.74HTH La-type RNA-binding domain-containing protein ... [more]
A0A836CAE4_9STRA1.880e-3451.39HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S1UC17_9STRA1.880e-2553.61Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U3W9_9STRA1.250e-2445.97Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2P4X4J6_9STRA1.340e-2348.57La domain family n=1 Tax=Phytophthora palmivora va... [more]
A0A662WMH8_9STRA2.080e-2347.62HTH La-type RNA-binding domain-containing protein ... [more]
K8ZBX0_NANGC2.110e-2344.95Rna-binding la domain protein (Fragment) n=2 Tax=N... [more]
A0A7S2WWB5_9STRA2.520e-2345.45Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
V9E4H7_PHYPR4.290e-2341.61HTH La-type RNA-binding domain-containing protein ... [more]
A0A662WKG7_9STRA9.420e-2347.62HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 123..205
e-value: 1.1E-13
score: 61.5
IPR006630La-type HTH domainPFAMPF05383Lacoord: 134..184
e-value: 2.7E-14
score: 53.0
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 123..214
score: 18.241
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 117..212
e-value: 4.8E-19
score: 69.8
NoneNo IPR availablePANTHERPTHR22792:SF76LARP (RNA BINDING LA RELATED PROTEIN) HOMOLOGcoord: 38..321
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 38..321
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 128..214

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig200contigEcto-sp13_S_contig200:28796..32687 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig200.6521.1mRNA_Ecto-sp13_S_contig200.6521.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig200 28796..32803 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig200.6521.1 ID=prot_Ecto-sp13_S_contig200.6521.1|Name=mRNA_Ecto-sp13_S_contig200.6521.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=379bp
MSSGSSGNAKPSASTPVKWTLVEAVAETPEGRRHKHQSHAGQRKGPGARG
SGYTGSWGQGRDGGRGRGGGQGYSGGNRGQRRGGGAGSRNNQGQGRGRGY
GGGYVGGATYYPTQANVGAESFEEQKAYMTNLAVRQIEFYFTVENLCRDI
FMRSYMDEEGYIPIAFVANFPGVARFGVELEDITAGILASDTLQVDTENE
TMRMREGWEVWLLPNQATGKQGVPRYIKVDPTVSEADRVNGTEPGGIPAQ
TTQDAASAGDVPDAEDTQTSLKEDSTAGAEKKEGESVTGPVAEEEQQSSS
EKDQVSHEDGAKTELTPLAPAWTPVGASTDAVQEQSSPPGSPTAVPPPDQ
KAPEEETGRNDGERETDEPAVPTAELKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf