prot_Ecto-sp13_S_contig1987.6449.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1987.6449.1
Unique Name	prot_Ecto-sp13_S_contig1987.6449.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	615

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1987.6449.1 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 683 bits (1763), Expect = 1.600e-239
Identity = 538/615 (87.48%), Postives = 547/615 (88.94%), Query Frame = 0

Query:    1 MTNTQQSKSGGGQRRAHRMMRSMPLDDEMIRLKRKAQEREEKLGNQANGRLTDPPNGDEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQRNEDDSEESSPLGANYRSDTDDNEESSLRGPHTNITICSSFCDPTSPSSGAARSSGGLSPSGSSLQRXXXXXXXXXXXXXXXXXXXXXXXXXX-APRPPSYNETLLADKSFHNPHASETMADAFGILRPASFVLDVGADDRPWGGAAGVAAAGAKGATAEGGEADVAAGNRGGEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDAYTQALGMCPDHDDGLVARGAAFASTGRLRQAVQDLSRALSVNPQNGNASSYLKETRSRRMERQEARETPGASATIGNTTTFENRTDSSVNGRKGLNGVSAAGGAVMPASMMASAGSAERDEASKAALGALLHDGAEGDALRKMRALLEEDEKXXXXXXXXXXXXXXXXXXXEEGSRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKAITTAAVGFRNGGSRGSGTGVSMTVSAEGGEDSEGDEAHPILQRKKHSLWG 614
            MTNT  SKSGGGQRRAH MMRSMPLDDEMIRLKRKAQEREEKL NQA+GRL DPPNGDEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQ+N     ESSPLGANYRSDTD      LRGP TN T  SSFCDPTSPSS                  XXXXXXXXXXXXXXXXXXXXXXXXXX APRPPSYNETLLADKSFHNPHASETMADAFGILRPASFVLDVG DDRPWGGAAGVAAAGAKGATAEGGEADV  G+ G EDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAID YTQALGMCPDHDDGLVARGAAFA+TGRLRQAVQDLSRALSVNPQNGNASSYLKETR RRMERQEARETPGASAT GNTTTFE+RTDS VNGR GLN VSAAGGAVMPAS+M SAGS ERDEAS+AALGALLHDGAEGDALRKMRALLE    XXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    TTAAVGFRNGGSRG GTGVSM++ AEGGEDSEGDEAHPILQRKKHSLWG
Sbjct:    1 MTNTT-SKSGGGQRRAHGMMRSMPLDDEMIRLKRKAQEREEKLRNQASGRLADPPNGDEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQQNXXXXXESSPLGANYRSDTDXXXXX-LRGPPTN-TSRSSFCDPTSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRPPSYNETLLADKSFHNPHASETMADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGEADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQNGNASSYLKETR-RRMERQEARETPGASATTGNTTTFESRTDSIVNGRMGLNCVSAAGGAVMPASVMPSAGSTERDEASEAALGALLHDGAEGDALRKMRALLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAVGFRNGGSRGLGTGVSMSLCAEGGEDSEGDEAHPILQRKKHSLWG 611

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BLAST of mRNA_Ecto-sp13_S_contig1987.6449.1 vs. uniprot
Match: A0A836CKS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.210e-13
Identity = 48/110 (43.64%), Postives = 58/110 (52.73%), Query Frame = 0

Query:  212 MADAFGILRPASFVLDVGADDRPWGGAAGVAAAGAKGATAEGGEADVAAGNRGGEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDAYTQALGMCPDHDDGL 321
            MA AF + RP SF +DV AD            AGA+                     +WF++ +R+RQ+R WADTRV KG ELAR GQH AAI  Y QALGMC  H D +
Sbjct:    1 MASAFRVCRPLSFAVDVAADG-----------AGAR---------------------DWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAV 78

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BLAST of mRNA_Ecto-sp13_S_contig1987.6449.1 vs. uniprot
Match: L1I460_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I460_GUITC)

HSP 1 Score: 67.4 bits (163), Expect = 3.630e-10
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 0

Query:  272 YDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDAYTQALGMCPDHDDGLVARGAAFASTGRLRQAVQDLSRALSVNPQNGNASSYLKETRSR 364
            Y  +R +QN  WA+  VRKG+  A    +  AI  Y  AL +  ++ D  VA GAA+A+T +  +A++  S+AL + P + NA  YL  TRS+
Sbjct:    3 YSELRKKQNVSWANESVRKGIHHAADRNYVMAIKCYQNALELDSENADAYVALGAAYANTSKSHEAIEAFSKALEIQPDHSNAIKYLNATRSK 95

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BLAST of mRNA_Ecto-sp13_S_contig1987.6449.1 vs. uniprot
Match: A0A0G4HYB4_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HYB4_9ALVE)

HSP 1 Score: 59.7 bits (143), Expect = 1.700e-5
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 0

Query:  283 WADTRVRKGVELARKGQHQA----AIDAYTQALGMCPDHDDGLVARGAAFASTGRLRQAVQDLSRALSVNPQNGNASSY 357
            WA+ RVR+GV +A+  +  +    AI  Y  AL +  +H+D LVA+GAA A+ G+ ++A++   RAL   P+N NA  Y
Sbjct:  768 WAERRVREGVAIAKSSRGDSDFDEAIAFYDSALDLVSNHEDALVAKGAALANLGKFQEALELFQRALRFFPENKNAKQY 846

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1987.6449.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1987.6449.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7FK49_ECTSI	1.600e-239	87.48	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CKS1_9STRA	1.210e-13	43.64	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
L1I460_GUITC	3.630e-10	38.71	Uncharacterized protein (Fragment) n=1 Tax=Guillar...	[more]
A0A0G4HYB4_9ALVE	1.700e-5	40.51	Uncharacterized protein n=1 Tax=Chromera velia CCM...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..101
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 318..351 e-value: 0.19 score: 20.8 coord: 284..317 e-value: 0.0028 score: 26.9
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 286..317 e-value: 0.027 score: 14.6
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 284..317 score: 8.85
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 318..351 score: 9.853
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 284..375 e-value: 1.5E-14 score: 56.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 280..373
IPR039190	Tetratricopeptide repeat protein 14	PANTHER	PTHR23184	FAMILY NOT NAMED	coord: 182..563
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 284..351 score: 17.48

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1987	contig	Ecto-sp13_S_contig1987:502..4074 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1987.6449.1	mRNA_Ecto-sp13_S_contig1987.6449.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1987 501..4074 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1987.6449.1 ID=prot_Ecto-sp13_S_contig1987.6449.1|Name=mRNA_Ecto-sp13_S_contig1987.6449.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=615bp
MTNTQQSKSGGGQRRAHRMMRSMPLDDEMIRLKRKAQEREEKLGNQANGR
LTDPPNGDEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQRNEDDSE
ESSPLGANYRSDTDDNEESSLRGPHTNITICSSFCDPTSPSSGAARSSGG
LSPSGSSLQRGGRKRRRPHAGGVATLSSSSSSSRRRAPRPPSYNETLLAD
KSFHNPHASETMADAFGILRPASFVLDVGADDRPWGGAAGVAAAGAKGAT
AEGGEADVAAGNRGGEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQH
QAAIDAYTQALGMCPDHDDGLVARGAAFASTGRLRQAVQDLSRALSVNPQ
NGNASSYLKETRSRRMERQEARETPGASATIGNTTTFENRTDSSVNGRKG
LNGVSAAGGAVMPASMMASAGSAERDEASKAALGALLHDGAEGDALRKMR
ALLEEDEKKRKRRGARGEGRGGGDGDGEEGSRKKKSRKKDKKSSSKSKRS
SSGRHRKRDRRESSGGGGSRHDSSSTSSSSGNSSAEDADARSSSSKKKKK
KRHLKRKKRSSTKAITTAAVGFRNGGSRGSGTGVSMTVSAEGGEDSEGDE
AHPILQRKKHSLWG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom_sf
IPR039190	TTC14
IPR013026	TPR-contain_dom