prot_Ecto-sp13_S_contig18685.5872.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig18685.5872.1
Unique Name	prot_Ecto-sp13_S_contig18685.5872.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	187

Homology

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: D8LB97_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB97_ECTSI)

HSP 1 Score: 360 bits (925), Expect = 1.190e-123
Identity = 182/187 (97.33%), Postives = 183/187 (97.86%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGYGGRMGMPMXXXXXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGG+GGRMGMPM    XXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV
Sbjct:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGHGGRMGMPMGGGRXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: A0A835YQ88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ88_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.560e-81
Identity = 125/187 (66.84%), Postives = 144/187 (77.01%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGYGGRMGMPMXXXXXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            MAR+Y+GNLPM+V EKD++D+FYKFGRI DIDLKTPARPPAF F+ F D RDAE+AVRARDGY+MDG RLRVE++RG R P            G PM             G +QTE+RVIVTGLPPSASWQDLKDHMRKAG+  YTDVDH+GGGIVH+ TRDDM+YALRKLD S+FRNPF+ S I V
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKFGRIRDIDLKTPARPPAFAFVAFDDVRDAEDAVRARDGYEMDGERLRVELARGARGPPXXXXXXX--XXGQPM------------GGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYNTRDDMEYALRKLDDSEFRNPFDHSFIRV 173

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: A0A836CC30_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC30_9STRA)

HSP 1 Score: 248 bits (634), Expect = 2.610e-79
Identity = 129/193 (66.84%), Postives = 151/193 (78.24%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGY------GGRMGMPMXXXXXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            MAR+Y+GNLPM+V EKD++D+FYK+GRI DIDLKTPARPP+F F+ F+D RDAE+AV  RDGY+MDG RLRVE++RG R+  G GG         GG  G      XXXXX     G +QTE+RVIVTGLPPSASWQDLKDHMRKAG+  YTDVDH+GGGIVH+ TR DMDYALRKLD S+FRNPF+KS I V
Sbjct:    1 MARVYVGNLPMNVREKDVEDLFYKYGRIRDIDLKTPARPPSFAFVAFEDVRDAEDAVSGRDGYEMDGQRLRVELARGARER-GFGGXXXXXFDERGGGRGFGAGRGXXXXXGPPMGGGRQTEWRVIVTGLPPSASWQDLKDHMRKAGDVVYTDVDHRGGGIVHYATRSDMDYALRKLDDSEFRNPFDKSYIRV 192

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: D8LPT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT5_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 1.680e-73
Identity = 126/213 (59.15%), Postives = 152/213 (71.36%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGG-----------------------YGGRMGMPMXXXXXXXXXXGGAGF---QQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D+RDA+EAVRARDGYD DG RLRVE+SRG+R+ FG G G                        YG   G   XXXXXXX      GF   +QTEYR +VTGLP SASWQDLKDHMRKAG+  Y DVDHKGGG+VHF  ++ MDYALRKLDGS+F N ++ + ISV
Sbjct:   53 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDSRDADEAVRARDGYDFDGYRLRVEMSRGKRE-FGGGFGXXXXXXXXXXXXXXXXXXXXXXXXYGXXXGXXXXXXXXXXMGPPRGGFGGGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNKEGMDYALRKLDGSEFSNRYDTATISV 264

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: A0A6H5KN34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN34_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 6.310e-71
Identity = 128/219 (58.45%), Postives = 153/219 (69.86%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGYGGRMGMPMXXXXXXXXXXGGAGF--------------------------------QQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            M+R+YIGNLPMD+ EKD++D+FYK+G+I D+ LK P RPPAFGF+TF+D RDA+EAVRARDGYD DG RLRVE+SRG+R+     GGG+G       XXXXXXXXXXGG G                                 +QTEYR +VTGLP SASWQDLKDHMRKAG+  Y DVDHKGGG+VHF  R+ MDYALRKLDGS+F N ++ + ISV
Sbjct:   61 MSRLYIGNLPMDMKEKDLEDIFYKYGKITDMQLKMPERPPAFGFVTFEDPRDADEAVRARDGYDFDGYRLRVEMSRGKREF----GGGFG-------XXXXXXXXXXGGGGXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXGRQTEYRAVVTGLPQSASWQDLKDHMRKAGDVNYADVDHKGGGVVHFNNREGMDYALRKLDGSEFSNRYDTAIISV 268

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: A0A7S2B3Q3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3Q3_9STRA)

HSP 1 Score: 215 bits (548), Expect = 1.600e-66
Identity = 111/185 (60.00%), Postives = 136/185 (73.51%), Query Frame = 0

Query:    3 RIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGYGGRMGMPMXXXXXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            RI++GNLPMD+ E+D++D+FYK+GR+ DI LKTP+RPPAF FITF D RDA++AVR RDGY + G RLRVEI RGRR P      G  GR G             GGAG + +++RVIVTGLP SASWQDLKDH R+AG+  YTDVD  GGG+V FRT  DM+YAL +LD S FRNPF++S+I V
Sbjct:    8 RIFVGNLPMDIRERDIEDLFYKYGRMSDIHLKTPSRPPAFAFITFDDRRDADDAVRGRDGYSLGGERLRVEIVRGRRGP----SRGPAGRPG-------------GGAG-EHSDFRVIVTGLPHSASWQDLKDHFRQAGDVVYTDVDRIGGGLVEFRTLRDMEYALDRLDYSRFRNPFDESKIRV 174

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: A0A7S0I1L9_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0I1L9_9CRYP)

HSP 1 Score: 204 bits (520), Expect = 5.040e-63
Identity = 99/187 (52.94%), Postives = 131/187 (70.05%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGYGGRMGMPMXXXXXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            MARIY+GNLP+D+ E+D+DD+FYK+GRI DI++KTP+RPPAF F+ F +  DAE+AVR RDG   +G+RLRVE+SRG    +G    G GG  G                  ++++YRVI++GLP SASWQDLKD+ R+AGE  YTDVD +GGGIV F   DD DYA++K D ++F NPF++  I V
Sbjct:    1 MARIYVGNLPLDIRERDVDDLFYKYGRIRDIEVKTPSRPPAFAFVEFDNLYDAEDAVRGRDGVMFEGARLRVEMSRGTAATYGYDKRGGGGGAGKAPPRN-----------LRRSDYRVIISGLPKSASWQDLKDYFRQAGEIVYTDVDRQGGGIVEFANEDDRDYAIKKFDDTEFSNPFDRGYIRV 176

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: A0A7S0RPW5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RPW5_9CHLO)

HSP 1 Score: 201 bits (511), Expect = 2.330e-62
Identity = 107/191 (56.02%), Postives = 133/191 (69.63%), Query Frame = 0

Query:    2 ARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGY--GGRMGMPMXXXXXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHKGG-GIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
             R+Y+GNLP+DV E++++D+FYK+GRI  IDLKTP+RPPAF F+ F D RDA++AVR RDGYD  GSR+RVE++ G R P G    G   G R G                  ++T+YRVIVTGLP SASWQDLKDHMRKAG+ T+T V  D +G  G+V F + DDM  ALRKLDGS+FRNPF+K  I V
Sbjct:    3 TRVYVGNLPIDVREREVEDLFYKYGRIRSIDLKTPSRPPAFAFLEFDDPRDAQDAVRGRDGYDFYGSRIRVELAHGGRGPPGXXXXGSFRGDRPGPSALGPSPFGPS------RRTDYRVIVTGLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGNMGLVDFSSYDDMQNALRKLDGSEFRNPFDKCTIKV 187

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: A0A699ZIZ3_HAELA (Uncharacterized protein (Fragment) n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZIZ3_HAELA)

HSP 1 Score: 199 bits (507), Expect = 1.250e-61
Identity = 113/201 (56.22%), Postives = 140/201 (69.65%), Query Frame = 0

Query:    2 ARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGYGGRMGMPMXXXXXXXXXXGG---AGF--------QQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDV--DHKGG--GIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            +R+Y+GNLP+DV E+++DD+FYK+GRI  IDLKTP+RPPAF FI ++D RDA +AVR RDGYD  GSR+RVE+S G R   G+    YGG      XXX       GG   AG         ++T++RVIVT LP SASWQDLKDHMRKAG+ T+T V  D +GG  G+V F T DDM  ALRKLD S+FRNPF+K+ I V
Sbjct:    4 SRVYVGNLPLDVREREIDDLFYKYGRIRGIDLKTPSRPPAFAFIDYEDPRDAADAVRGRDGYDFYGSRIRVELSHGGRG--GLSSDRYGGGDXXXXXXXRGRDDYRGGSASAGLGPSPFGPSRRTDFRVIVTNLPLSASWQDLKDHMRKAGDVTFTQVMKDGRGGNMGLVDFSTMDDMQTALRKLDQSEFRNPFDKTLIRV 202

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BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Match: A0A7S0NDQ0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NDQ0_9CRYP)

HSP 1 Score: 199 bits (507), Expect = 5.410e-61
Identity = 96/187 (51.34%), Postives = 132/187 (70.59%), Query Frame = 0

Query:    1 MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDARDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGYGGRMGMPMXXXXXXXXXXGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDHKGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV 187
            MAR+Y+GNLP+D+  +D++D+FYK+GRI DI++KTP RPPAF F++F++  DAE+A+R RDG   +G+RLR E+SRG       GGG YG R G                  ++++YRVIV+ LPPSASWQDLKDH R+ G+  YTDVD KGGGIV F TR + + A+++LD ++F+NPF+K  I V
Sbjct:    5 MARVYVGNLPLDIRTRDIEDLFYKYGRIRDIEVKTPNRPPAFAFVSFENYHDAEDAIRGRDGISFEGARLRCEMSRGS------GGGRYGDRDGPRPSRQQQPRRD-----LRRSDYRVIVSNLPPSASWQDLKDHFRQVGDVVYTDVDRKGGGIVEFATRGEQEAAIKELDDTEFKNPFDKVYIRV 180

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18685.5872.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LB97_ECTSI	1.190e-123	97.33	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YQ88_9STRA	2.560e-81	66.84	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CC30_9STRA	2.610e-79	66.84	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D8LPT5_ECTSI	1.680e-73	59.15	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KN34_9PHAE	6.310e-71	58.45	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A7S2B3Q3_9STRA	1.600e-66	60.00	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S0I1L9_9CRYP	5.040e-63	52.94	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]
A0A7S0RPW5_9CHLO	2.330e-62	56.02	Hypothetical protein (Fragment) n=1 Tax=Chlamydomo...	[more]
A0A699ZIZ3_HAELA	1.250e-61	56.22	Uncharacterized protein (Fragment) n=2 Tax=Haemato...	[more]
A0A7S0NDQ0_9CRYP	5.410e-61	51.34	Hypothetical protein n=1 Tax=Hanusia phi TaxID=303...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 3..73 e-value: 4.9E-20 score: 82.6 coord: 118..186 e-value: 1.7E-7 score: 40.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 119..178 e-value: 1.3E-9 score: 37.7 coord: 4..71 e-value: 3.6E-17 score: 62.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 2..77 score: 17.865
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 117..187 score: 10.923
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..113 e-value: 2.7E-23 score: 84.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 116..187 e-value: 4.4E-22 score: 79.8
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 2..179
None	No IPR available	PANTHER	PTHR23003:SF27	NUCLEOLAR PROTEIN 3	coord: 2..179
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..178

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18685	contig	Ecto-sp13_S_contig18685:504..3414 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18685.5872.1	mRNA_Ecto-sp13_S_contig18685.5872.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig18685 504..3414 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig18685.5872.1 ID=prot_Ecto-sp13_S_contig18685.5872.1|Name=mRNA_Ecto-sp13_S_contig18685.5872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
MARIYIGNLPMDVTEKDMDDVFYKFGRIVDIDLKTPARPPAFGFITFQDA
RDAEEAVRARDGYDMDGSRLRVEISRGRRDPFGMGGGGYGGRMGMPMGGG
RGGFGGRGGAGFQQTEYRVIVTGLPPSASWQDLKDHMRKAGEPTYTDVDH
KGGGIVHFRTRDDMDYALRKLDGSDFRNPFEKSRISV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf