prot_Ecto-sp13_S_contig1855.5799.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1855.5799.1
Unique Nameprot_Ecto-sp13_S_contig1855.5799.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length980
Homology
BLAST of mRNA_Ecto-sp13_S_contig1855.5799.1 vs. uniprot
Match: A0A6H5L4H0_9PHAE (Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H0_9PHAE)

HSP 1 Score: 824 bits (2128), Expect = 1.670e-283
Identity = 823/973 (84.58%), Postives = 836/973 (85.92%), Query Frame = 0
Query:    8 VTFAQMDTVALPPSVVSSPRRIRVVFTADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKQRKGKKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTLQQSDGREHGRTAISGSSXXXXXXXXXXXXXXXXXXXXXS-KKRGGKEGSVSGVGNKAGGKKRGAPAVGAAACRKRSRTGSPAVESSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKLPADIPARGAESTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKETKGAKENAKGKRTPTLSAGGTAGGRGDVGGMRGVGNATPNLVPSGRGAGXXXXXXXGGIGGGQQHWGGPLGRIVGQLRRPEGESESKLGGAAAATAPLEPEGRAGGRGGSTARGGVFGPGRGIGRGGMGMTRGGGFAGGGYADRNTRRHSTGDSANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASIEDDKRDGGGSGSGALVNGCTKGHTAGQQQQGSSSSIAESNAEEGSVPTSNGHNEGGASGDSKGMEDPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARSTSSGEVGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKAGRGGRXXXXXXXXXXXXGSARKQGVKGKGASPKSXXXXXXXXXXXXXXXXXXXXXXXXXPTGGGRGATAKATAPSSAV 979
            V F +MDTVALPP+V SSPRRIRVVF ADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLK+RKG+KARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTL+QSDGREHGRTAISG+S  XXXXXXX            + KKRGG+EGSVSGVGNKAGGKKRGAPAVGAAA RKRSRTGSPAVESSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       KLPADIPARGAES  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AKE KGAKENAKG                         NATPNLVPSGRGAGXXXXXXX    GGQQHWGGPLGRIVGQLRRPEGESES  GGAAAATAPLEPEGRAG        GGVFGPG      GMGMTRGGGFAGG YADRNTRRHSTG +ANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPAS EDD +DGGG+GSGA VN CTKGHT GQQQQGSSS IAESN EEGSVPTSNGHNEGG  GDSKGME PAA   XXXXXXXXXXXXXXXXXXXXXXXXXXX             KARSTSSGEVGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KKAGRGG+XXXXXXXXXXXXGSARKQG KG  ASPKS                         PTGGGRGA  + TAPSSAV
Sbjct:   49 VIFVKMDTVALPPAVASSPRRIRVVFKADAGCVPSSNPTLTKRWIFIPPRLTVIGDLAHHLTRQLKRRKGRKARSSSLVLTLDGFVLPPTESLDVLRETDVVTLTLRQSDGREHGRTAISGNSTTXXXXXXXGAGKAKTNQKAKAPKKRGGREGSVSGVGNKAGGKKRGAPAVGAAAGRKRSRTGSPAVESSASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------KLPADIPARGAESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKAKEPKGAKENAKG-------------------------NATPNLVPSGRGAGXXXXXXXXXXXGGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAATAPLEPEGRAGXXXXXXXVGGVFGPGXXXXXXGMGMTRGGGFAGGRYADRNTRRHSTGHTANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASTEDDNKDGGGAGSGAFVNDCTKGHTVGQQQQGSSSIIAESNTEEGSVPTSNGHNEGGFGGDSKGMEYPAAVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAEPTTDGRNKARSTSSGEVGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-KKAGRGGKXXXXXXXXXXXXGSARKQGGKGXXASPKSVGKKQGAARGTLAVAGLLGKCAGKLPTGGGRGAAEEGTAPSSAV 988          
BLAST of mRNA_Ecto-sp13_S_contig1855.5799.1 vs. uniprot
Match: D7FZW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW0_ECTSI)

HSP 1 Score: 605 bits (1561), Expect = 6.360e-205
Identity = 442/528 (83.71%), Postives = 451/528 (85.42%), Query Frame = 0
Query:  454 MRGVGNATPNLVPSGRGAGXXXXXXXGGIG--GGQQHWGGPLGRIVGQLRRPEGESESKLGGAAAATAPLEPEGRAGGRGGSTARGGVFGPGRGIGRGGMGMTRGGGFAGGGYADRNTRRHSTGDSANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTLSLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASIEDDKRDGGGSGSGALVNGCTKGHTAGQQQQGSSSSIAESNAEEGSVPTSNGHNEGGASGDSKGMEDPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKARSTSSGEVGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELKKRKQALQKWNSLGPGGGILGGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKAGRGGRXXXXXXXXXXXXGSARKQGVKGKGASPKSXXXXXXXXXXXXXXXXXXXXXXXXXPTGGGRGATAKATAPSSAV 979
            MRGVGNATPNLVPSGRGAGXXXXXXX      GGQQHWGGPLGRIVGQLRRPEGESES  GGAAAA APLEPEGRAGGRG STARGGVFGPGRGIGRGGMGMTRGGG AGGGYA++NTRRHSTGD+ANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVEN DARYV YEELPTDMRPQV DVLAFKTLSLNEETWTPELSPYR AEV AFD SSGLVRL PASIEDD +DG       LVNGCTKGHTAGQQQQGSSS I ESN EEG VPTSNGHN+GG SG+SKGMEDPAA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KARSTSSG+VGGAEEDRELREGEEELEYSSLANVRVVRGPSMGEL+KRKQAL KWNSLGPGGGILGG  XXXXXXXXXXXXXXXXXXXXXX         KKAGRGGRXXXXXXXXXX  GSARKQG KGKGASPKS                         PTGGG GA  +ATAPSSAV
Sbjct:    1 MRGVGNATPNLVPSGRGAGXXXXXXXXXXXXXGGQQHWGGPLGRIVGQLRRPEGESESNGGGAAAAIAPLEPEGRAGGRGDSTARGGVFGPGRGIGRGGMGMTRGGGAAGGGYANKNTRRHSTGDTANGDGGSAKKRGRGGWKKDYEVIASVESKAGEAAAEAAAAGSVENGDARYVVYEELPTDMRPQVCDVLAFKTLSLNEETWTPELSPYRTAEVTAFDTSSGLVRLLPASIEDDNKDGXXXXXXXLVNGCTKGHTAGQQQQGSSSGITESNTEEGRVPTSNGHNQGGVSGNSKGMEDPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKARSTSSGKVGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELEKRKQALHKWNSLGPGGGILGGXXXXXXXXXXXXXXXXXXXXXXXXPASLPSATPKKAGRGGRXXXXXXXXXXACGSARKQGGKGKGASPKSVGKKQGAARGTLAVAGLLGKCAGKLPTGGGGGAAGEATAPSSAV 528          
BLAST of mRNA_Ecto-sp13_S_contig1855.5799.1 vs. uniprot
Match: A0A0P0Y9A7_ORYSJ (Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0Y9A7_ORYSJ)

HSP 1 Score: 55.1 bits (131), Expect = 1.310e-5
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 0
Query:   28 RIRVVFTADAGCVPSSNPTLTKR-WIFIPPRLTVIGDLAHHLTRQLKQRKGKKARSSSLVLTLDGFVLPPTESLDVLRETDVV 109
            R+R+VF        S   +  +R W+ +PP L+ + DLA H+  + + R+   +  S ++L++DGFVLPP ES  + R+ D++
Sbjct:   10 RLRLVFDNQRILRRSLRESGLRRCWLLLPPELSTVSDLAAHIAARFRLRR---SCPSCVILSIDGFVLPPFESTCIFRDNDII 89          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1855.5799.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L4H0_9PHAE1.670e-28384.58Coilin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=8... [more]
D7FZW0_ECTSI6.360e-20583.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0P0Y9A7_ORYSJ1.310e-533.73Coilin n=1 Tax=Oryza sativa subsp. japonica TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031722Coilin, N-terminal domainPFAMPF15862Coilin_Ncoord: 28..153
e-value: 2.6E-12
score: 46.7
IPR024822CoilinPANTHERPTHR15197COILIN P80coord: 27..684

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1855contigEcto-sp13_S_contig1855:9018..13817 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1855.5799.1mRNA_Ecto-sp13_S_contig1855.5799.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1855 8986..14267 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1855.5799.1 ID=prot_Ecto-sp13_S_contig1855.5799.1|Name=mRNA_Ecto-sp13_S_contig1855.5799.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=980bp
MSVASTSVTFAQMDTVALPPSVVSSPRRIRVVFTADAGCVPSSNPTLTKR
WIFIPPRLTVIGDLAHHLTRQLKQRKGKKARSSSLVLTLDGFVLPPTESL
DVLRETDVVTLTLQQSDGREHGRTAISGSSSATTTTTTGAGATKNKQKAS
ASKKRGGKEGSVSGVGNKAGGKKRGAPAVGAAACRKRSRTGSPAVESSAS
SGKRRKVGSSSTAEKAKKAARKRTKGKGADSAAATQDSSSSDGDSSSCGE
SAPAKRGGRAAAGGKGATTVAAKKAGELTAATVYPAGGGEEAVAMSSTKR
KKKQKLPADIPARGAESTSSSSSDESSSSSSSSSSSTSSSSSSSSSSSGS
EDEESDSEEEEEEAEVKKTTSRKTKEVKLNAVAAAAAAGDGDDSSSSSSS
SSGSDSSDSDESSSPDEEEKAKETKGAKENAKGKRTPTLSAGGTAGGRGD
VGGMRGVGNATPNLVPSGRGAGGRGRVGGGGIGGGQQHWGGPLGRIVGQL
RRPEGESESKLGGAAAATAPLEPEGRAGGRGGSTARGGVFGPGRGIGRGG
MGMTRGGGFAGGGYADRNTRRHSTGDSANGDGGSAKKRGRGGWKKDYEVI
ASVESKAGEAAAEAAAAGSVENADARYVGYEELPTDMRPQVRDVLAFKTL
SLNEETWTPELSPYRMAEVIAFDASSGLVRLRPASIEDDKRDGGGSGSGA
LVNGCTKGHTAGQQQQGSSSSIAESNAEEGSVPTSNGHNEGGASGDSKGM
EDPAAVAGSTGGGSVSRKEEEESGSVAQQPEEPAAAGASPEPTTDGGNKA
RSTSSGEVGGAEEDRELREGEEELEYSSLANVRVVRGPSMGELKKRKQAL
QKWNSLGPGGGILGGSAAGNNINNSNNNSNTDVDSAAASPASLPSATPKK
AGRGGRGRGRGRGGGGAGGSARKQGVKGKGASPKSVGKKQGAARGTLAVA
GLLGKCAGKLPTGGGRGATAKATAPSSAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR031722Coilin_N
IPR024822Coilin