prot_Ecto-sp13_S_contig1829.5674.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1829.5674.1
Unique Name	prot_Ecto-sp13_S_contig1829.5674.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	289

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 248 bits (633), Expect = 2.710e-71
Identity = 228/316 (72.15%), Postives = 249/316 (78.80%), Query Frame = 0

Query:    1 MALADRDALVALFRSTGGASWGRKDRWDTSAEL--ATWCGVEVNDEGRVVRLSLGSNNLEGHIPPQLGKLGALEGL------------------------HXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALWDHTRGVQD-VGQEAARTMSGGHIPSELRRLLDTLDRAERAYLDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            MA  DR AL ALFRSTGG  W RKD WDT+A+L  ATW GVEVN +GRV++LSL  NNL+G +P +LG L  L+ L                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +ALWDHT  +QD V +E A  MSGG IPS+L RLLD LDRAE   L L  NPWAEPPESIVA G KS+RGYFEDLYAEPCRV+RSS+K++LVGQEGAGKTSLR+SMK NEAT TG+ KEESTVFADVEPME+EGSSV
Sbjct:    1 MADTDRGALKALFRSTGGVRWKRKDNWDTAADLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELWLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALWDHTHYLQDIVHEEGAHGMSGGRIPSQLCRLLDVLDRAEGGVLSLEDNPWAEPPESIVAKGPKSIRGYFEDLYAEPCRVERSSVKVILVGQEGAGKTSLRQSMKTNEATPTGDWKEESTVFADVEPMELEGSSV 316

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 4.040e-66
Identity = 208/289 (71.97%), Postives = 234/289 (80.97%), Query Frame = 0

Query:    1 MALADRDALVALFRSTGGASWGRKDRWDTSAELATWCGVEVNDEGRVVRLSLGSNNLEGHIPPQLGKLGALEGLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALWDHTRGVQDVGQEAARTMSGGHIPSELRRLLDTLDRAERAYLDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            MA  DRDALVALFRS GGA+W RK+ WDT+A+L +W GV +N++GRV  L L  NNL+G IP ++G L  +E L   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +ALWDHT+  Q V +   RT+ GG +PS+L RLLD LDRA    L L  NPWAEPP SIV+ G  S+RGYFEDLY E  RVQR+S+KI+LVGQEGAGKTSLR+SMKAN A  TGE KEESTVFADVEPM++EGS V
Sbjct:    1 MASTDRDALVALFRSAGGATWRRKENWDTAADLESWFGVILNNQGRVAELKLAVNNLQGVIPEKIGALNKIEILTLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNELTALWDHTQNAQHVEEGGNRTL-GGQLPSQLCRLLDVLDRATGGILGLDDNPWAEPPASIVSKGPTSIRGYFEDLYVESSRVQRNSVKIILVGQEGAGKTSLRQSMKANAAIPTGEWKEESTVFADVEPMQLEGSFV 288

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 7.080e-58
Identity = 106/134 (79.10%), Postives = 117/134 (87.31%), Query Frame = 0

Query:  156 LWDHTRGVQDVGQEAARTMSGGHIPSELRRLLDTLDRAERAYLDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            LWDHT   +DVGQE A+ MSGG IPSELRRLL+TLD A+    DLG NPWAEPPESIV  GM+S+RGYFEDLYAEPCRVQR S+K+VLVGQEGAGKTSLR+SMKANEAT TGE KEESTVFADV+PME+EGSSV
Sbjct:  516 LWDHTCNAEDVGQERAKRMSGGTIPSELRRLLETLDGADT---DLGGNPWAEPPESIVTKGMESIRGYFEDLYAEPCRVQRRSVKVVLVGQEGAGKTSLRQSMKANEATPTGEWKEESTVFADVQPMELEGSSV 646

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 8.190e-55
Identity = 217/395 (54.94%), Postives = 241/395 (61.01%), Query Frame = 0

Query:    1 MALADRDALVALFRSTGGASWGRKDRWDTSAELATWCGVEVNDEGRVVRLSLGSNNLEGHIPPQLGKLGALEGLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------SALWDHTRGVQDVG-QEAARTMSGGHIPSELRRLLDTLDRAERAYLD---------LGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            MA  DR+AL+ALFR T G  W R+  W T AELATW GV+VN +GRVV+L L +NNL+G IPP LGKL AL+ L+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                                SALWDHT+ VQDV  +E   +M GG +PS+L RLLD  D  E   L+         L  NPWAEPPESIVA G KS+RGYFEDLYAE CR++R  +K+VLVGQEGAGKTSLR+SMKAN+ATLTGE KE STV ADVE ME+EGSSV
Sbjct:    1 MASTDREALIALFRLTCGYGWSRRGNWGTDAELATWDGVQVNGQGRVVKLGLAANNLQGPIPPALGKLAALQDLYLNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSALWDHTQNVQDVDHKERGHSMPGGPMPSQLCRLLDIFDSVEAQGLNDTGIGPSLSLSENPWAEPPESIVAKGPKSIRGYFEDLYAEHCRIKRRGVKVVLVGQEGAGKTSLRQSMKANKATLTGEWKENSTVLADVESMELEGSSV 395

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 1.510e-52
Identity = 101/138 (73.19%), Postives = 115/138 (83.33%), Query Frame = 0

Query:  154 SALWDHTRGVQDVG-QEAARTMSGGHIPSELRRLLDTLDRAERAY-LDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            +ALW+HT  V+D   +EA+ +M GG  P +L RLLD LDRAER   L+L  NPWAEPPESIVA G K++RGYFEDLYAEPCRVQRSS+KI+LVGQEGAGKTSLRKSMKA EAT TGE KEESTVFADVE ME+EGSS+
Sbjct:  250 TALWNHTLNVEDARHEEASHSMQGGSFPRQLCRLLDVLDRAEREVDLNLDDNPWAEPPESIVAKGAKNIRGYFEDLYAEPCRVQRSSVKIILVGQEGAGKTSLRKSMKAKEATPTGEWKEESTVFADVERMELEGSSI 387

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.780e-52
Identity = 96/137 (70.07%), Postives = 115/137 (83.94%), Query Frame = 0

Query:  154 SALWDHTRGVQDVGQEAARTMSGGHIPSELRRLLDTLDRAERA-YLDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            +ALWDHT+ VQDV  +   +MSGG +PS+L RLLD L+  E   +L L SNPWAEPPESIVA G+KSVRGYFEDL+A+ CR++R  +K+VLVGQEGAGKTSLR+SMKAN+AT TGE KEESTVFADVEPM++EGSSV
Sbjct:   88 TALWDHTQNVQDVNHDGGDSMSGGPMPSQLCRLLDLLESREAGRHLSLNSNPWAEPPESIVAKGLKSVRGYFEDLFADHCRIKRRGVKVVLVGQEGAGKTSLRQSMKANKATPTGEWKEESTVFADVEPMKLEGSSV 224

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 4.550e-51
Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = 0

Query:  155 ALWDHTRGVQDVG-QEAARTMSGGHIPSELRRLLDTLDRAERAYLDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            ALWDHT+ VQD+  +E   +MSGG +PS+L RLLD LD     Y+ LG NPW EPPES+VA G KS+RGYFEDLYAEPCR+ RSS+K+VLVGQEGAGKTSLR+SMKAN+A+ TG+  EESTVFA+VEPME++GSSV
Sbjct:  323 ALWDHTQDVQDIDPKERGDSMSGGTMPSQLCRLLDVLDPVPSRYVGLGGNPWTEPPESVVAKGPKSIRGYFEDLYAEPCRITRSSVKVVLVGQEGAGKTSLRQSMKANKASPTGKWNEESTVFANVEPMELDGSSV 458

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 9.690e-51
Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 0

Query:  154 SALWDHTRGVQDVG-QEAARTMSGGHIPSELRRLLDTLDRAERAYLDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            +ALWDHT+ VQDV  +E    M GG +PS+L RLL  LDR     L L  NPWAEPPESIVA G KS+RGYFEDLYAEPC ++RSS+K+VLVGQEGAGKTSLR+SMKAN+AT TGE KEESTVFADVEPME+EGSSV
Sbjct:   39 AALWDHTQNVQDVHHKEGGDIMPGGAMPSQLCRLLVVLDRLSGVNLALLGNPWAEPPESIVAKGPKSIRGYFEDLYAEPCWIKRSSVKVVLVGQEGAGKTSLRQSMKANKATPTGEWKEESTVFADVEPMELEGSSV 175

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.630e-50
Identity = 97/140 (69.29%), Postives = 113/140 (80.71%), Query Frame = 0

Query:  154 SALWDHTRGVQDVGQ-EAARTMSGGHIPSELRRLLDTLDRAERAY---LDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            SALWDHT+  +D+G  E  + MSGG +PS+L RLLD LD  ++     L LG+NPW EPPE IV  G K+VRGYFEDLYAEPCR++RS +K+VLVGQEGAGKTSLR+SMKANEAT TGE KEESTVFADVE ME+EGSSV
Sbjct:  105 SALWDHTQNAEDIGHDEGTQRMSGGPMPSQLCRLLDVLDDIQQGKFQSLKLGTNPWVEPPEPIVVKGPKAVRGYFEDLYAEPCRIKRSIVKVVLVGQEGAGKTSLRQSMKANEATPTGEWKEESTVFADVEAMELEGSSV 244

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BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.720e-48
Identity = 97/137 (70.80%), Postives = 109/137 (79.56%), Query Frame = 0

Query:  154 SALWDHTRGVQDVGQEAART-MSGGHIPSELRRLLDTLDRAERAYLDLGSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAGKTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV 289
            SALWDHT+ VQD  Q+     MSGG +P +L RLLD L   ERA + L  NPWAEPPESIV  G KS+R YFEDLYAEPCR++R S K+VLVGQEGAGK+SLR+SMKANE T TGE KEESTVFADVEPME+EGSSV
Sbjct:   61 SALWDHTQNVQDEDQDKGGCGMSGGSMPGQLCRLLDVL---ERAKIVLDGNPWAEPPESIVDKGRKSMRSYFEDLYAEPCRIERISTKVVLVGQEGAGKSSLRQSMKANEPTPTGEWKEESTVFADVEPMELEGSSV 194

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1829.5674.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FUC3_ECTSI	2.710e-71	72.15	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FUC9_ECTSI	4.040e-66	71.97	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D8LCS7_ECTSI	7.080e-58	79.10	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D8LJS7_ECTSI	8.190e-55	54.94	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FUD0_ECTSI	1.510e-52	73.19	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
A0A6H5L650_9PHAE	2.780e-52	70.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LF46_ECTSI	4.550e-51	69.12	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FZA1_ECTSI	9.690e-51	72.26	LRR-GTPase of the ROCO family, incomplete sequence...	[more]
A0A6H5KSZ8_9PHAE	1.630e-50	69.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G431_ECTSI	2.720e-48	70.80	LRR-GTPase of the ROCO family, incomplete sequence...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 92..116 e-value: 5.2 score: 15.6 coord: 140..162 e-value: 22.0 score: 10.5 coord: 68..91 e-value: 110.0 score: 4.7
None	No IPR available	GENE3D	3.30.70.1390		coord: 237..288 e-value: 4.8E-5 score: 25.5
None	No IPR available	PANTHER	PTHR27008:SF309		coord: 111..203
None	No IPR available	PANTHER	PTHR27008	FAMILY NOT NAMED	coord: 94..151 coord: 49..124
None	No IPR available	PANTHER	PTHR27008	FAMILY NOT NAMED	coord: 111..203
None	No IPR available	PANTHER	PTHR27008:SF309		coord: 94..151
None	No IPR available	PANTHER	PTHR27008:SF309		coord: 49..124
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 27..158
IPR025875	Leucine rich repeat 4	PFAM	PF12799	LRR_4	coord: 94..133 e-value: 2.0E-6 score: 28.0
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 1..221 e-value: 1.2E-46 score: 161.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 236..285

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1829	contig	Ecto-sp13_S_contig1829:2728..8387 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1829.5674.1	mRNA_Ecto-sp13_S_contig1829.5674.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1829 2715..8387 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1829.5674.1 ID=prot_Ecto-sp13_S_contig1829.5674.1|Name=mRNA_Ecto-sp13_S_contig1829.5674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=289bp
MALADRDALVALFRSTGGASWGRKDRWDTSAELATWCGVEVNDEGRVVRL
SLGSNNLEGHIPPQLGKLGALEGLHLSWNKLDGHIPKELGALSKLETLWL
NGNKLAGSIPPELGSLRKLSILDLASNNLSGPIPKELGGLTELEGFNLSC
NQLSALWDHTRGVQDVGQEAARTMSGGHIPSELRRLLDTLDRAERAYLDL
GSNPWAEPPESIVANGMKSVRGYFEDLYAEPCRVQRSSIKIVLVGQEGAG
KTSLRKSMKANEATLTGETKEESTVFADVEPMEIEGSSV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR025875	Leu-rich_rpt_4
IPR032675	LRR_dom_sf
IPR027417	P-loop_NTPase