prot_Ecto-sp13_S_contig1807.5555.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1807.5555.1
Unique Nameprot_Ecto-sp13_S_contig1807.5555.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length650
Homology
BLAST of mRNA_Ecto-sp13_S_contig1807.5555.1 vs. uniprot
Match: D8LCN6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN6_ECTSI)

HSP 1 Score: 787 bits (2032), Expect = 5.850e-280
Identity = 502/643 (78.07%), Postives = 515/643 (80.09%), Query Frame = 0
Query:   14 RRWRPPPTLTATRCVFELIDTTTPALVVKRKPCVYPGAARHREALRRAKVLTATDPTTLDIRSGDFYKDFAAESRLACLESKKEIRSFDEARARGSEGQPSGERWRQEPTPEAWSPDAAMFSEAAMTAASQPGGLGTGPRVTLSDTYRSFRVLNLAERNVTTIDPAFAHFENLTELDLGRNRLRKLENLPEGLVSLSCAANELSGLPDLGTTTPERTRCTDSAAVAATPPASSAGKAGAVRGETAGNSKERGDXXXXXXXQQLGDVEFLVPG-----DNHDSPVRTGWFSWASEVVPPPTEALEADNNDGRSDQPQSEQETVDSTAPDIGNDGTSWEASVTLPPSREMRDVVRFQGLHVLLFVGDHEREAEGGEEAVDGDASPPAETAEVGNNVDSVGVVDVLNSTDEPTHPPGGEGDVEGEAQDHDRVGPRILPSRRRRLAGRGHLSLSNFLDPAWMMREQHQPQPQQRQQERGEDVGEAESVVAAETTLFQTTEDGEAGRKTGASAGMRTLFGVNGGAAAPATISGECDVVLEPWVVETMREGVARRKRERLERKEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--TLNSGMASLAVATIGPTTAAPAAADAW 649
            RRWRPPPTL ATRCVF+LIDTTTPALVVKRKPCVYPGAARHREALRRAKVLTATDPTTLDIRSGDFYKDFAAESRLACLESKKEIRSFDEARA+GSEGQPSGE+ RQEPTPEAWSPDAA  SEAAMTAASQPGGLGTGPRVTLSDTYRSFRVLNLAERN+TTIDPAFAHFENLTELDLGRNRLRKLENLPEGLVSLSCAANELSGLPDLGTTTPERTR TDSAAVAATPPA+  GKAG VRGETAGNS+ERGD       QQ GDVEFLVPG     DNHDSP RTGWFSWASEVVPPPTE  +ADNNDG S+QPQ+EQETVDSTAPD GN GT WE SV LPPSREMRD VRF GL VLLFVGD EREAEG EE V+GDASPPA+T E  NN + VGVVD  NSTDEPTHPPGGEG V                                                                            EDGEAG KTGA AGMRTLFGVNGG AAPA ISGEC+VVLEPWVVETMREGVARRKRERLERKEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  TLNSGMASLAVATIGPT A PAAADAW
Sbjct:   34 RRWRPPPTLPATRCVFDLIDTTTPALVVKRKPCVYPGAARHREALRRAKVLTATDPTTLDIRSGDFYKDFAAESRLACLESKKEIRSFDEARAKGSEGQPSGEQRRQEPTPEAWSPDAAKLSEAAMTAASQPGGLGTGPRVTLSDTYRSFRVLNLAERNITTIDPAFAHFENLTELDLGRNRLRKLENLPEGLVSLSCAANELSGLPDLGTTTPERTRSTDSAAVAATPPAAGTGKAGTVRGETAGNSEERGDEEEPPLPQQWGDVEFLVPGNNHNSDNHDSPTRTGWFSWASEVVPPPTETPDADNNDGGSEQPQTEQETVDSTAPDFGNGGTPWEVSVALPPSREMRDDVRFHGLCVLLFVGDDEREAEGKEETVEGDASPPAKTTEAVNNGEFVGVVDGFNSTDEPTHPPGGEGHV----------------------------------------------------------------------------EDGEAGGKTGAPAGMRTLFGVNGGDAAPAKISGECNVVLEPWVVETMREGVARRKRERLERKEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLNSGMASLAVATIGPTAAVPAAADAW 600          
BLAST of mRNA_Ecto-sp13_S_contig1807.5555.1 vs. uniprot
Match: A0A6H5JBC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC6_9PHAE)

HSP 1 Score: 560 bits (1443), Expect = 6.630e-189
Identity = 418/737 (56.72%), Postives = 438/737 (59.43%), Query Frame = 0
Query:  139 MTAASQPGGLGTGPRVTLSDTYRSFRVLNLAERNVTTIDPAFAHFENLTELDLGRNRLRKLENLPEGLVSLSCAANELSG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LPDLGTTTPERTRCTDSAAVAATPPASSAGKAGAVRGETAGNSKERGDXXXXXXXQQLGDVEFLVPGDNH-----DSPVRTGWFSWASEVVPPPTEALEADNNDGRSDQPQSEQETVDSTAPDIGNDGTSWEASVTLPPSREMRDVVRFQGLHVLLFVGDHEREAEGGEEAVDGDASPPAETAEVGNNVDSVGVVDVLNSTDEPTHPPGGEGDVEGEAQDHDRVGPRILPSRRRRLAGRGHLSLSNFLDPAWMMREQHQPQPQQRQQERGEDVGEAESVVAAETTLFQTTEDGEAGRKTGASAGMRTLFGVNGGAAAPATISGECDVVLEPWVVETMREGVARRKRERLERKEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-LNSGMASLAVATIGPTTAAPAAADA 648
            MTAASQPGGLGTGPRVTLSDTYRSFRVLNLAERN+TTID AFAHFENLTELDLGRNRL+KLENLP+GLVSLSCA+NELSG                                                                                                                                                                                                                             LPDLGTTTPER RCT SAAVAATPPAS AGKAGAVRGETA NS+    XXXXX  Q+ GDVEFLVPGDNH     DSP RTGWFSWA+EVVPP TEA +AD+NDGRS+QPQ+EQE VDSTA D+ N+GT WE SV LPPSREMRD VRFQGL V LFVGD EREAEG EE V+GDAS PAE A+  NNVDSV  VD  +ST EPTHPPGGEGDVEGEAQD DRV P++LPSRRRRLAGRGHLSLS FLDPAWMMREQHQPQPQQRQQERGEDV EAESVV A         DGEAG KTGA AGMRTLFGVN GAAAPATISGEC+VVLEPWVVETMR+GVARRKRERLERKEAAR              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LN GMASLAVAT G T AAPAAADA
Sbjct:    1 MTAASQPGGLGTGPRVTLSDTYRSFRVLNLAERNITTIDLAFAHFENLTELDLGRNRLQKLENLPKGLVSLSCASNELSGRALDGVTGLPLLCSLDLSFNNLEVHSLLPPPKAELPRRCLLNASGHNIGDRPAQPTKNGSDGDDGVQRQFRRPEAPPPLATGEKYMHFQEKFSSLEHLDISWNCLCDLDRLLRTLMRVPCPLQDNLRHLFLAGNPFCLLPAYRERVLGRGFGPGLVMLDDLPVSPVEYRSAAATAAAVEKAQEGCLDGVRENEDEDHNKRPRGKGSFEAVHFHVKLLRLSGLPDLGTTTPERPRCTASAAVAATPPASGAGKAGAVRGETASNSEXXXXXXXXXPLQKWGDVEFLVPGDNHYSDNHDSPARTGWFSWAAEVVPPLTEAPDADSNDGRSEQPQTEQEAVDSTASDVANNGTPWEVSVALPPSREMRDDVRFQGLRVQLFVGDDEREAEGEEETVEGDASSPAEAAKAVNNVDSV--VDGFSSTGEPTHPPGGEGDVEGEAQDQDRVRPQMLPSRRRRLAGRGHLSLSPFLDPAWMMREQHQPQPQQRQQERGEDVTEAESVVTA---------DGEAGGKTGAPAGMRTLFGVNDGAAAPATISGECNVVLEPWVVETMRKGVARRKRERLERKEAARAEAEVNAANDPKGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPGMASLAVATTGSTAAAPAAADA 726          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1807.5555.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCN6_ECTSI5.850e-28078.07Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBC6_9PHAE6.630e-18956.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 555..575
NoneNo IPR availableCOILSCoilCoilcoord: 586..608
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 183..204
e-value: 0.0022
score: 27.3
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 161..223
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 151..227
e-value: 6.3E-10
score: 40.0
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 185..206
score: 8.282

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1807contigEcto-sp13_S_contig1807:3375..11312 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1807.5555.1mRNA_Ecto-sp13_S_contig1807.5555.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1807 3092..11324 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1807.5555.1 ID=prot_Ecto-sp13_S_contig1807.5555.1|Name=mRNA_Ecto-sp13_S_contig1807.5555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=650bp
MTTVAVESDHSRPRRWRPPPTLTATRCVFELIDTTTPALVVKRKPCVYPG
AARHREALRRAKVLTATDPTTLDIRSGDFYKDFAAESRLACLESKKEIRS
FDEARARGSEGQPSGERWRQEPTPEAWSPDAAMFSEAAMTAASQPGGLGT
GPRVTLSDTYRSFRVLNLAERNVTTIDPAFAHFENLTELDLGRNRLRKLE
NLPEGLVSLSCAANELSGLPDLGTTTPERTRCTDSAAVAATPPASSAGKA
GAVRGETAGNSKERGDEEEPPPPQQLGDVEFLVPGDNHDSPVRTGWFSWA
SEVVPPPTEALEADNNDGRSDQPQSEQETVDSTAPDIGNDGTSWEASVTL
PPSREMRDVVRFQGLHVLLFVGDHEREAEGGEEAVDGDASPPAETAEVGN
NVDSVGVVDVLNSTDEPTHPPGGEGDVEGEAQDHDRVGPRILPSRRRRLA
GRGHLSLSNFLDPAWMMREQHQPQPQQRQQERGEDVGEAESVVAAETTLF
QTTEDGEAGRKTGASAGMRTLFGVNGGAAAPATISGECDVVLEPWVVETM
REGVARRKRERLERKEAARAEAEANAAIDTKGKNAKAAAAAAAAAKLQER
DEEEEEEEEIGPSPSARAEVEVTLNSGMASLAVATIGPTTAAPAAADAW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt