prot_Ecto-sp13_S_contig1726.5131.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1726.5131.1
Unique Name	prot_Ecto-sp13_S_contig1726.5131.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	873

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1726.5131.1 vs. uniprot
Match: D8LFU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFU5_ECTSI)

HSP 1 Score: 738 bits (1905), Expect = 6.960e-253
Identity = 668/881 (75.82%), Postives = 688/881 (78.09%), Query Frame = 0

Query:    3 RRDTTQQDKTEGAAPGHESSSVKLEGRGGDNHRAQARGGGLSRPTSTXXXXXXXXXXXXXXXXXXXS-GTGGVRVRQAGPDGAVAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHCWRGLATTPAXXXDAEGAGEELAGDTAXXXXXXXXXSSSMRGDGALATSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLSFAEECRRDLRRHAKRGEGEKAVALIARMREAGATPTERSYTSAINACRNGTSLWKEALELLKEAQTAGGGGITPNAFHYTGVLRACADAGQLDQISLLKSEMASLGIAPGLSYYHGAMAAAKGAENPTQGWETVKELVSEMSEKRVVPNQNTYRLVDEVRSGRGSSSSAEVNNGGVGVDGSKNGASYGGDVEAERLVSMLRGIDGAPPPATTETEGRERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------KPSFSREAGSPPAPGSLQACNRDLRRCADHGAGEAAAELIGRMRKGSVQPTAKSYTSAINAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASPKTGGEVRASMSRGGGWRAGEQQVDDAXXXXXXXXXXXXXDGVDGSKPAVRSAGEAAAALLRDMSEKGVAPDSITYTLVMTAYREDGEPERALAVLREMQELASEAEAEADVQPVAETVEEEAGVGGERGDRELGKGSSHAGADDSG---TPXXXXXXXXXXXXXXXXXXXXXXXXXXVVVPNVIHYSSVMSAFADHPGGWKHVLRLMKEMEV 873
            RRDTTQQDK  GAA GHESSSV+LEGRGGD HRAQAR GGLSR TS XXXXXXXXXXXXXXXXXXX  G GGVRV QA P+ AVAGGA                                   H WRGLATTPA   DAEGAGEELAGDTA         SSS+RG GALA   XXXXXXXXXXXXXXXXXXXXXX         X       XXXXXXXXXXXXXXXXXXXXXXXXXXX        XXXXXXXXXXXXX     PSLSFAE+CR DLRRHAKRGEGEKAVALIARMREAG  PTERSYTSAINACRNGTS WKEALELLKEAQTAGGGGITPNAFHYTGVLRACADAGQLDQI  LKSEMASLGI+PGLSYYHGAMAAAKGA    QGW+TVKELVSEMSEKRVVP+QNTYRLVDEVRSG GSSSSAEVNNGG+GVDGSK+GAS GGDVEAERLVSMLRGIDGAPPPATT+TEGRERA       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      KP   REAGS PA GSLQACNRDLRR AD GAG+AAAELIGRMRK  VQPTAKSYTSAINA                  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  SPKTGGE+RASM+RGGGWRA EQ VDDA          XXX               AAAALLR+MSEKGVAPDSITYTLVMTA R DGEPERALAVLREMQ+LASE EAEADV PVAETV+EEAGVGGE GDRE+GKGSSH GA+DSG   +P         XXXXXXXXXXXXXXXXXVVVPNVIHYSSVMSAFADHPGGWKHVLRLMKEME+
Sbjct:   12 RRDTTQQDKAAGAASGHESSSVRLEGRGGDKHRAQARSGGLSRLTSXXXXXXXXXXXXXXXXXXXXXXGAGGVRVGQAAPNDAVAGGARIRRATTPAMAAAAVPEQQPSSAGPAINLAGGGG-HRWRGLATTPAAAADAEGAGEELAGDTAIVARSGGTGSSSVRGGGALAPXXXXXXXXXXXXXXXXXXXXXXXXSGPGVAAEAXPRGRRPRXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVVGISSXXXXXXXXXXXXXTAGGVPSLSFAEKCRGDLRRHAKRGEGEKAVALIARMREAGVMPTERSYTSAINACRNGTSQWKEALELLKEAQTAGGGGITPNAFHYTGVLRACADAGQLDQIPPLKSEMASLGISPGLSYYHGAMAAAKGA---AQGWKTVKELVSEMSEKRVVPSQNTYRLVDEVRSGLGSSSSAEVNNGGIGVDGSKDGASDGGDVEAERLVSMLRGIDGAPPPATTKTEGRERAKRRPKTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPRSKREAGSRPALGSLQACNRDLRRYADRGAGDAAAELIGRMRKDGVQPTAKSYTSAINACKNGGQWERALALLREAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPKTGGEIRASMTRGGGWRAVEQHVDDAKSNSSAGGGDXXXXXXXXXXXXXXXX-XAAAALLREMSEKGVAPDSITYTLVMTACRVDGEPERALAVLREMQKLASETEAEADVGPVAETVQEEAGVGGEGGDREVGKGSSHDGANDSGASGSPAVPSPHPPRXXXXXXXXXXXXXXXXXVVVPNVIHYSSVMSAFADHPGGWKHVLRLMKEMEM 887

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BLAST of mRNA_Ecto-sp13_S_contig1726.5131.1 vs. uniprot
Match: A0A6H5KG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG38_9PHAE)

HSP 1 Score: 695 bits (1794), Expect = 1.820e-233
Identity = 533/608 (87.66%), Postives = 550/608 (90.46%), Query Frame = 0

Query:  268 PSLSFAEECRRDLRRHAKRGEGEKAVALIARMREAGATPTERSYTSAINACRNGTSLWKEALELLKEAQTAGGGGITPNAFHYTGVLRACADAGQLDQISLLKSEMASLGIAPGLSYYHGAMAAAKGAENPTQGWETVKELVSEMSEKRVVPNQNTYRLVDEVRSGRGSSSSAEVNNGGVGVDGSKNGASYGGDVEAERLVSMLRGIDGAPPPATTETEGRERAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSFS-REAGSPPAPGSLQACNRDLRRCADHGAGEAAAELIGRMRKGSVQPTAKSYTSAINAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASPKTGGEVRASMSRGGGWRAGEQQVDDAXXXXXXXXXXXXXDGVDGSKPAVRSAGEAAAALLRDMSEKGVAPDSITYTLVMTAYREDGEPERALAVLREMQELASEAEAEADVQPVAETVEEEAGVGGERGDRELGKGSSHAGADDSGTPXXXXXXXXXXXXXXXXXXXXXXXXXX-VVVPNVIHYSSVMSAFADHPGGWKHVLRLMKEMEV 873
            PSLSFAEECRR LRRHAKRGEGEKAVALIARMREAG TPTERSYTSAINACRNGTS WKEALELLKEAQTAGGGGITPNAFHYTGVLRACADAGQLDQI  LKSEMASLGIAPGLSYYHGAMAAAKGAENPTQGWET+KELVSEMSEKRVVPNQNTYRLVDEVRSG GSS SAEVN GG+GVDGSK+ AS G DVEAERLVSMLRGIDGAPPPAT +TEGRE+A       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +EAGSPPA GSLQACNRDLRR A+ GAGEAAAELIGRMRKG VQPTAKSYTSAINA     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASPKTG EVRASM+RGGGWRAGEQQVDD              DGV+G KPA  SAGEAAAALLR+MSEKGVAPDSITYTLV+TA REDG+PERALAVLREMQ+LASEAEAEADVQPVAETVEEEAGVG E GDRE+GKGS+HAGA+DSG P XXXXXXXXXXXXXXXXXXXXXXXXX VVVPNVIHYSSVMSAFADHPGGWK+VLRLMKEMEV
Sbjct:  188 PSLSFAEECRRALRRHAKRGEGEKAVALIARMREAGLTPTERSYTSAINACRNGTSQWKEALELLKEAQTAGGGGITPNAFHYTGVLRACADAGQLDQIPPLKSEMASLGIAPGLSYYHGAMAAAKGAENPTQGWETMKELVSEMSEKRVVPNQNTYRLVDEVRSGLGSSGSAEVNKGGIGVDGSKDDASNGRDVEAERLVSMLRGIDGAPPPATAKTEGREQAKRRPKTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAGSPPALGSLQACNRDLRRYANRGAGEAAAELIGRMRKGGVQPTAKSYTSAINACKNGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASPKTGSEVRASMTRGGGWRAGEQQVDDVNSSSGGDD-----DGVNGLKPAAPSAGEAAAALLREMSEKGVAPDSITYTLVITACREDGKPERALAVLREMQKLASEAEAEADVQPVAETVEEEAGVGEEGGDREVGKGSNHAGANDSGAPGXXXXXXXXXXXXXXXXXXXXXXXXXGVVVPNVIHYSSVMSAFADHPGGWKYVLRLMKEMEV 790

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1726.5131.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1726.5131.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LFU5_ECTSI	6.960e-253	75.82	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5KG38_9PHAE	1.820e-233	87.66	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 273..449 e-value: 9.8E-23 score: 83.0 coord: 542..706 e-value: 6.8E-24 score: 86.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 737..764 e-value: 6.9E-4 score: 17.6 coord: 583..615 e-value: 0.0023 score: 16.0 coord: 622..651 e-value: 8.5E-4 score: 17.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 342..385 e-value: 0.0069 score: 16.4 coord: 603..660 e-value: 6.4E-4 score: 19.7 coord: 723..764 e-value: 6.6E-5 score: 22.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 843..873 score: 7.761
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 615..649 score: 9.208
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 580..614 score: 9.164
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 346..380 score: 9.098
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 272..306 score: 6.095
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 735..769 score: 9.788
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 307..342 score: 6.434
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 545..579 score: 7.059
None	No IPR available	PANTHER	PTHR46128	FAMILY NOT NAMED	coord: 718..764 coord: 549..662 coord: 284..425

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1726	contig	Ecto-sp13_S_contig1726:10590..15799 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1726.5131.1	mRNA_Ecto-sp13_S_contig1726.5131.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1726 10590..15799 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1726.5131.1 ID=prot_Ecto-sp13_S_contig1726.5131.1|Name=mRNA_Ecto-sp13_S_contig1726.5131.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=873bp
GPRRDTTQQDKTEGAAPGHESSSVKLEGRGGDNHRAQARGGGLSRPTSTT
GAAAAAATPSRAASSSATSGTGGVRVRQAGPDGAVAGGARMRRATTPAMA
AAAVPEQQPSSASAAINLAGGGGGHCWRGLATTPAAAADAEGAGEELAGD
TAIVASSGGTGSSSMRGDGALATSRDSSGGDASGSPPPQGGAEEDSPSGQ
GVAAEAAPRDRRSRQQRRRKQRQTQPPYGDGGKGAGDGGDDDGVVGVSNG
GNGAVAAEAVAGGGGGGPSLSFAEECRRDLRRHAKRGEGEKAVALIARMR
EAGATPTERSYTSAINACRNGTSLWKEALELLKEAQTAGGGGITPNAFHY
TGVLRACADAGQLDQISLLKSEMASLGIAPGLSYYHGAMAAAKGAENPTQ
GWETVKELVSEMSEKRVVPNQNTYRLVDEVRSGRGSSSSAEVNNGGVGVD
GSKNGASYGGDVEAERLVSMLRGIDGAPPPATTETEGRERANRRRKPPPR
PAATAEAVEEEARGGGAAAAAAAAASRRKKPSFSREAGSPPAPGSLQACN
RDLRRCADHGAGEAAAELIGRMRKGSVQPTAKSYTSAINACKNGGQWERA
LALLRDAPESGVSLNAFHFVAAIKACGKAHQWDQVAALVSEMRSREISPN
VEFYNWAIKAAASPKTGGEVRASMSRGGGWRAGEQQVDDANSSSSGGGGG
GGDDGVDGSKPAVRSAGEAAAALLRDMSEKGVAPDSITYTLVMTAYREDG
EPERALAVLREMQELASEAEAEADVQPVAETVEEEAGVGGERGDRELGKG
SSHAGADDSGTPGSPAVPSPPAPPRRRRRREGGAGAVGVVVPNVIHYSSV
MSAFADHPGGWKHVLRLMKEMEV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat