prot_Ecto-sp13_S_contig16866.4909.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16866.4909.1
Unique Nameprot_Ecto-sp13_S_contig16866.4909.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length125
Homology
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: D7FM66_ECTSI (WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' exonuclease/ nucleic acid binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM66_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 4.540e-49
Identity = 88/110 (80.00%), Postives = 94/110 (85.45%), Query Frame = 0
Query:   16 ILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYAGLRL 125
            +L +  GVGGDVNRLEREYDQLRAGGGV GV+DLSE+AKRKV          A +RRRRGMWSLADLCAEVL+LELKKPA LRTGSWEKRPLSVDQLFYAAADAYAGLRL
Sbjct:    4 LLCSRRGVGGDVNRLEREYDQLRAGGGVGGVVDLSEVAKRKV----------APERRRRGMWSLADLCAEVLELELKKPASLRTGSWEKRPLSVDQLFYAAADAYAGLRL 103          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: UPI0010A39886 (Werner Syndrome-like exonuclease n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A39886)

HSP 1 Score: 78.2 bits (191), Expect = 1.100e-14
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 0
Query:    3 LPDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGC--SSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAY 120
            +P SL  +L +PTIL AGVG+GGD  +  ++Y+       ++GV DLS +AK+K+ G   S G+TS               L  ++L  +LKKP+ +R G+WE  PLS  QL YAA DAY
Sbjct:  184 IPPSLKLLLEDPTILKAGVGIGGDARKFFKDYEI-----SIKGVEDLSFLAKQKLVGDIQSFGLTS---------------LTEKLLSKQLKKPSKIRLGNWEALPLSEQQLDYAAIDAY 283          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: A0A2K1JPS4_PHYPA (3'-5' exonuclease domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JPS4_PHYPA)

HSP 1 Score: 78.2 bits (191), Expect = 1.850e-14
Identity = 49/123 (39.84%), Postives = 72/123 (58.54%), Query Frame = 0
Query:    3 LPDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYAGLRL 125
            +P SL  +L +PTIL  GVG+ GDV++L+R+Y +L+    ++GV++LSEIA +K+    S              WSL+ L   +   +++K   +R G WE  PLS  QL YAA DA+A L L
Sbjct:  279 IPSSLYAILEDPTILKTGVGIHGDVSKLQRDY-KLK----IQGVVNLSEIANQKLGRWQS--------------WSLSSLSQALTCKQVEKVPNIRCGDWEACPLSPPQLQYAATDAFASLYL 382          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: A0A1Q3CPQ4_CEPFO (DNA_pol_A_exo1 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CPQ4_CEPFO)

HSP 1 Score: 72.8 bits (177), Expect = 1.170e-12
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 0
Query:    3 LPDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYA 121
            +P SL  +L + T+L  GVG+G D  ++ +EY+       ++ + D+S +A RK+               R   WSL  L   ++  EL+KP+C+R G+WE   LS++QL YAA DA++
Sbjct:  205 IPPSLQSLLEDSTVLKVGVGIGNDAVKVFKEYNV-----SIKALEDISRLAGRKLD--------------RAKQWSLGSLTEILVSKELQKPSCIRLGNWEANVLSMEQLQYAATDAFS 304          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: M4EVB5_BRARP (3'-5' exonuclease domain-containing protein n=13 Tax=Brassiceae TaxID=981071 RepID=M4EVB5_BRARP)

HSP 1 Score: 71.2 bits (173), Expect = 2.830e-12
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 0
Query:    3 LPDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYAGLRL 125
            +P SL  ++ + +++  G+G+ GD  +L  ++     G  ++ V DLS++A +K+ G         L++     WSLA L   ++  EL KP  +R G+WE RPLS +QL YAA DAYA   L
Sbjct:  159 IPQSLQHLIEDSSLVKVGIGIDGDSVKLFHDH-----GVSIKDVEDLSDLANKKIGG--------GLKK-----WSLASLTETLVCKELLKPNRIRLGNWEVRPLSKEQLQYAATDAYASWHL 263          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: A0A087H2C4_ARAAL (3'-5' exonuclease domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087H2C4_ARAAL)

HSP 1 Score: 69.7 bits (169), Expect = 1.130e-11
Identity = 42/123 (34.15%), Postives = 64/123 (52.03%), Query Frame = 0
Query:    3 LPDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYAGLRL 125
            +P SL  ++ + T++  G G+ GD  ++  ++     G  ++ V DLS++AK+K+ G                 W LA L   ++  EL KP  +R G+WE RPLS +QL YAA DAY    L
Sbjct:  168 IPQSLQHLIEDSTLVKVGCGIDGDSVKIFHDH-----GVSIKDVEDLSDLAKKKIGGVKK--------------WGLASLTETLVCKELLKPNRIRLGNWEVRPLSREQLQYAATDAYVSWHL 271          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: A0A6V2NVX0_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2NVX0_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 8.740e-10
Identity = 49/122 (40.16%), Postives = 63/122 (51.64%), Query Frame = 0
Query:    4 PDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYAGLRL 125
            P +L  +LS+ ++L AGVG+G D+ RL RE    RA      V+DL  +A R      SG   A LQR          LCAEVL   L K A +R   WE   LS +Q+ YAA DA+  + L
Sbjct:  246 PQALTSLLSDASVLKAGVGIGQDL-RLLREQHGSRAAA----VLDLQALASR------SGFHGAGLQR----------LCAEVLGKHLDKRAEVRCSDWEASTLSAEQVAYAAKDAHVAVDL 346          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: A0A6V2NTY6_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A6V2NTY6_EMIHU)

HSP 1 Score: 65.1 bits (157), Expect = 9.270e-10
Identity = 49/122 (40.16%), Postives = 63/122 (51.64%), Query Frame = 0
Query:    4 PDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYAGLRL 125
            P +L  +LS+ ++L AGVG+G D+ RL RE    RA      V+DL  +A R      SG   A LQR          LCAEVL   L K A +R   WE   LS +Q+ YAA DA+  + L
Sbjct:  246 PQALTSLLSDASVLKAGVGIGQDL-RLLREQHGSRAAA----VLDLQALASR------SGFHGAGLQR----------LCAEVLGKHLDKRAEVRCSDWEASTLSAEQVAYAAKDAHVAVDL 346          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: A0A2H9ZSE4_9ASPA (Werner Syndrome-like exonuclease n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2H9ZSE4_9ASPA)

HSP 1 Score: 62.8 bits (151), Expect = 4.350e-9
Identity = 41/119 (34.45%), Postives = 60/119 (50.42%), Query Frame = 0
Query:    3 LPDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYA 121
            +P +L  +L + +    G+G+ GD  ++ REYD +R    V  ++DLS  A  K  G              R  W L  L   V   +L KP+ +R G+WE   LS++QL YAA DA+A
Sbjct:  184 IPPALKLLLEDSSSFKVGIGIAGDAMKIYREYD-IR----VASLIDLSRYANLKFGGT-------------RRNWGLCSLTERVTCKQLPKPSKIRLGNWEADELSMEQLHYAATDAFA 284          
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Match: A0A6A6R4I2_9PEZI (Ribonuclease H-like protein n=1 Tax=Lophium mytilinum TaxID=390894 RepID=A0A6A6R4I2_9PEZI)

HSP 1 Score: 62.0 bits (149), Expect = 1.050e-8
Identity = 49/123 (39.84%), Postives = 67/123 (54.47%), Query Frame = 0
Query:    3 LPDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLSEIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTGSWEKRPLSVDQLFYAAADAYAGLRL 125
            LP ++  +L NP IL  GV V  D  RL R++  + A    RGV +LS + K          +    ++  R + SLA+  AE L L L K A +R   W K PL +DQ+ YAA+DAYAG+RL
Sbjct:  142 LPPTIKTILENPAILKTGVAVKSDFTRL-RKFLGVEA----RGVFELSHLYK------LVKFSKDEPEKVNRMLVSLANQVAEHLQLPLNKGA-VRESDWSK-PLLIDQMRYAASDAYAGVRL 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16866.4909.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM66_ECTSI4.540e-4980.00WRNEXO (WERNER SYNDROME-LIKE EXONUCLEASE) 3\'-5\' ... [more]
UPI0010A398861.100e-1441.67Werner Syndrome-like exonuclease n=1 Tax=Prosopis ... [more]
A0A2K1JPS4_PHYPA1.850e-1439.843'-5' exonuclease domain-containing protein n=2 Ta... [more]
A0A1Q3CPQ4_CEPFO1.170e-1234.45DNA_pol_A_exo1 domain-containing protein n=1 Tax=C... [more]
M4EVB5_BRARP2.830e-1235.773'-5' exonuclease domain-containing protein n=13 T... [more]
A0A087H2C4_ARAAL1.130e-1134.153'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6V2NVX0_EMIHU8.740e-1040.16Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A6V2NTY6_EMIHU9.270e-1040.16Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A2H9ZSE4_9ASPA4.350e-934.45Werner Syndrome-like exonuclease n=1 Tax=Apostasia... [more]
A0A6A6R4I2_9PEZI1.050e-839.84Ribonuclease H-like protein n=1 Tax=Lophium mytili... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 7..125
e-value: 8.4E-10
score: 38.6
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..125
e-value: 8.5E-28
score: 98.9
NoneNo IPR availablePANTHERPTHR13620:SF45WERNER SYNDROME-LIKE EXONUCLEASEcoord: 3..123
NoneNo IPR availablePANTHERPTHR136203-5 EXONUCLEASEcoord: 3..123
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16866contigEcto-sp13_S_contig16866:2154..3160 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16866.4909.1mRNA_Ecto-sp13_S_contig16866.4909.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16866 2154..3160 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16866.4909.1 ID=prot_Ecto-sp13_S_contig16866.4909.1|Name=mRNA_Ecto-sp13_S_contig16866.4909.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
PRLPDSLVRVLSNPTILLAGVGVGGDVNRLEREYDQLRAGGGVRGVMDLS
EIAKRKVRGCSSGVTSAALQRRRRGMWSLADLCAEVLDLELKKPACLRTG
SWEKRPLSVDQLFYAAADAYAGLRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf