prot_Ecto-sp13_S_contig1680.4872.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1680.4872.1
Unique Name	prot_Ecto-sp13_S_contig1680.4872.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	514

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1680.4872.1 vs. uniprot
Match: A0A6H5JU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU38_9PHAE)

HSP 1 Score: 772 bits (1993), Expect = 3.990e-278
Identity = 409/492 (83.13%), Postives = 425/492 (86.38%), Query Frame = 0

Query:   30 MVQPAPGWEDVEPSAEGHDRGSG-RTAMGKLWRQPLRALNHCSSDANMTPAVSTTVVDTRDSDLGHVACVPTSSLASLGGRPQDTDIREPHGEGLQVLEAENVGEGNFKGWSVWRGQQQEQQQDKREDVGHDLQ--REGIVVVGEFEHRQ--QEDKVGATEFDVGPFEGEHNYNVRHYNENGNSTSXXXXXXXXXXXXXXDSSRVRGFHDMICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSEEAVTFNLEEMSMVGAAMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPENRRRR-FCCRWHPAGVLLARVGLGGSSAAFDENELPSFAGEAGQPAAAEGPVKAKGSRLGSRLTAEGVEEGGVG--RERSFDPV 513
            MVQPAPGWEDVEPSAEGHD GS  RTA+G LWR PL ALNHCSSDA MTPAV TTVVD RDSDLGHV C PTSS ASLGGRPQDT+ REPHGEGL  LEAE VGEG  KG SVWRGQQQ++Q          LQ  REG+VVVGE E RQ  QEDK GATEFDVGPFEG HN+++RH+ +NG+STS              DSSRVRGFHDMICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSEEAVTFNLEEMSMVGA MGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWL+GMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSV       MATLTVLCQFFIGIVALPKPSRSSP+NRRRR FCCRW+PAGVLLA +GLGGSSAAFDENELPSFAGEAGQPAAAEGPVKAKGSR GSRL AEG+ EGGVG  RERSFDPV
Sbjct:    1 MVQPAPGWEDVEPSAEGHDGGSSNRTAVGNLWRHPLGALNHCSSDAKMTPAVPTTVVDARDSDLGHVECAPTSSSASLGGRPQDTETREPHGEGLH-LEAEKVGEGTSKGLSVWRGQQQQRQXXXXXXXXXXLQDEREGVVVVGEIEQRQRQQEDKAGATEFDVGPFEGRHNFSIRHHIDNGSSTSGGERRGGG------DSSRVRGFHDMICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSEEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLMGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVXXXXXXXMATLTVLCQFFIGIVALPKPSRSSPQNRRRRRFCCRWNPAGVLLAHLGLGGSSAAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLMAEGIVEGGVGVGRERSFDPV 485

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BLAST of mRNA_Ecto-sp13_S_contig1680.4872.1 vs. uniprot
Match: D8LTM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM4_ECTSI)

HSP 1 Score: 500 bits (1288), Expect = 3.320e-174
Identity = 253/267 (94.76%), Postives = 261/267 (97.75%), Query Frame = 0

Query:  235 MICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSEEAVTFNLEEMSMVGAAMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPENRRRRFCCRWHPAGVLLARVGLGGSSAAFDENELPSFAGEAGQPAAAEGPVKAKGSRLGSRLTAEGVEE 501
            MICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANS+EAVTFNLEEMSMVGA MGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLG T+IGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSP+NRRRRFCCRW+PAGVLLAR+GLG SS AFDENELPSFAGEAGQPAAAEGPVKAKGSR GSRLTAE +++
Sbjct:    1 MICIGFAVSLILNLGSFTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSDEAVTFNLEEMSMVGAVMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRLCLASLAMAGWLLGTTIIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVSVDYAYAMATLTVLCQFFIGIVALPKPSRSSPQNRRRRFCCRWNPAGVLLARLGLGDSSPAFDENELPSFAGEAGQPAAAEGPVKAKGSRRGSRLTAEEMQD 267

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1680.4872.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1680.4872.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5JU38_9PHAE	3.990e-278	83.13	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LTM4_ECTSI	3.320e-174	94.76	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 403..424
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 235..253
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 335..354
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 355..383
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 307..334
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 425..513
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..234
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 254..306
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 384..402
None	No IPR available	TMHMM	TMhelix		coord: 401..423
None	No IPR available	TMHMM	TMhelix		coord: 350..372
None	No IPR available	TMHMM	TMhelix		coord: 311..333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1680	contig	Ecto-sp13_S_contig1680:4639..11467 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1680.4872.1	mRNA_Ecto-sp13_S_contig1680.4872.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1680 4639..11467 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1680.4872.1 ID=prot_Ecto-sp13_S_contig1680.4872.1|Name=mRNA_Ecto-sp13_S_contig1680.4872.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=514bp
GLPEDDGLCLQRQGEYPQDKKADDSLAHAMVQPAPGWEDVEPSAEGHDRG
SGRTAMGKLWRQPLRALNHCSSDANMTPAVSTTVVDTRDSDLGHVACVPT
SSLASLGGRPQDTDIREPHGEGLQVLEAENVGEGNFKGWSVWRGQQQEQQ
QDKREDVGHDLQREGIVVVGEFEHRQQEDKVGATEFDVGPFEGEHNYNVR
HYNENGNSTSGGERRGGGGGGGGGDSSRVRGFHDMICIGFAVSLILNLGS
FTARKEGYFAAEVKCLPQGASQTVLPDLGVWVGWRQAVANSEEAVTFNLE
EMSMVGAAMGILTVVGNATDGLLNAVGLAVLLYGRRKPLQEAQCRMVKRL
CLASLAMAGWLLGMTVIGFLIAVKGPIGAAAVAFYSEEFDLDCGNSVSVS
VDYAYAMATLTVLCQFFIGIVALPKPSRSSPENRRRRFCCRWHPAGVLLA
RVGLGGSSAAFDENELPSFAGEAGQPAAAEGPVKAKGSRLGSRLTAEGVE
EGGVGRERSFDPV*