prot_Ecto-sp13_S_contig16445.4646.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16445.4646.1
Unique Nameprot_Ecto-sp13_S_contig16445.4646.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length339
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16445.4646.1 vs. uniprot
Match: D7FLK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLK8_ECTSI)

HSP 1 Score: 228 bits (580), Expect = 1.530e-68
Identity = 152/348 (43.68%), Postives = 203/348 (58.33%), Query Frame = 0 
Query:    9 NAVVRRPLFALEDVVLYIFVVVQPFFVWIFSGVYSRAINVRVLSNVLRPLAP-PCLAAGSSAVRPPAVDLAP-APPQSSGNHGVAGSWSAWSTRGRIVEGLLSAVVLKHAVEG-WTFSPSALAALLVGVMLRLSLFFAVLRGLSDLWRLWH------DSSPLDGRVSNAERCGVPEYPVLDSVDRFEYDYLQKRY---IFNARMCKILGVCYFSSAAIDLLNTLMDDSIAYRVARI------CAVFPFVRVLYKFLSGDETYQGTQLLTLKNLCVNQPSCRHVRAFLLATGTIYAVLLHLSPVPSKWAWSLIVTHSTRLLNVLVALRGHNQGVADAAAEIVEHVPEAL 338
              ++ R LF+LED+VLYI V V+ + VWI S  Y RA+NV  LS+VLR ++  P +AAG  A  P   +L+P APP+SS NH V+ S SAWSTRG IVEG+L  VV  + + G W   P  L  +  G + RL + + V     +L  LW       + + +DG     ER  +     LD +D  EYD+ QK Y   +F   +  I G    +S ++ L++ L      ++VA +      C       +LY+       Y   +    + +C+ QP CRHVRAFLLA G IYAVLLHLSP PSKW WSLIVTHSTRLL++L+ALRG N+GVA+AA EIV HVPEA+
Sbjct:   26 GTIMSRSLFSLEDIVLYIVVAVRSYVVWILSSTYYRAMNVPGLSDVLRQVSSSPRIAAGPPAAPPSPAELSPSAPPRSSCNHRVSESRSAWSTRGCIVEGVLFTVVCGYWMRGLWPLDPLTLGKMFAGAIFRLPVQYIVHHAFPELRWLWSAQVVSVEHTNIDG-----ERVVLLNSTNLDGIDPSEYDFFQKVYSFVVFTFALVTIPGDLG-ASISVVLISHLSLVFSVFQVAVVIVIYFSCWTICLTHLLYRPFIKTAIYG--RFFQWELICMTQPRCRHVRAFLLAGGMIYAVLLHLSPAPSKWTWSLIVTHSTRLLSLLIALRGDNEGVANAAGEIVAHVPEAV 365
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16445.4646.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLK8_ECTSI1.530e-6843.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 225..243
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..145
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 275..291
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 22..42
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 297..316
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 43..125
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 200..219
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 292..296
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..21
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 317..338
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 220..224
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 146..199
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 244..274
NoneNo IPR availableTMHMMTMhelixcoord: 122..144
NoneNo IPR availableTMHMMTMhelixcoord: 24..46

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16445contigEcto-sp13_S_contig16445:2125..3316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16445.4646.1mRNA_Ecto-sp13_S_contig16445.4646.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16445 2125..3316 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16445.4646.1 ID=prot_Ecto-sp13_S_contig16445.4646.1|Name=mRNA_Ecto-sp13_S_contig16445.4646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=339bp
MPLPTTIANAVVRRPLFALEDVVLYIFVVVQPFFVWIFSGVYSRAINVRV
LSNVLRPLAPPCLAAGSSAVRPPAVDLAPAPPQSSGNHGVAGSWSAWSTR
GRIVEGLLSAVVLKHAVEGWTFSPSALAALLVGVMLRLSLFFAVLRGLSD
LWRLWHDSSPLDGRVSNAERCGVPEYPVLDSVDRFEYDYLQKRYIFNARM
CKILGVCYFSSAAIDLLNTLMDDSIAYRVARICAVFPFVRVLYKFLSGDE
TYQGTQLLTLKNLCVNQPSCRHVRAFLLATGTIYAVLLHLSPVPSKWAWS
LIVTHSTRLLNVLVALRGHNQGVADAAAEIVEHVPEAL*
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