prot_Ecto-sp13_S_contig1517.3898.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1517.3898.1
Unique Nameprot_Ecto-sp13_S_contig1517.3898.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length536
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1517.3898.1 vs. uniprot
Match: D7G753_ECTSI (Tetratricopeptide domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G753_ECTSI)

HSP 1 Score: 556 bits (1433), Expect = 3.220e-193
Identity = 384/476 (80.67%), Postives = 392/476 (82.35%), Query Frame = 0 
Query:    1 MLNEFSMVGQDQLAVGSVESSFRAAVAKQENVFTLTALAHLLADLGQNDEAESFFDKALKCPHHATKHGSPSSDGETRGLAMGWYAALVEGNGSEGAAKAEGLYKRALQINDRDALAMGNYAVFLHKIKRDHRAAATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQPCTSAPLLDKIEGLYKRAVHADPVNANNFSNFGLFLAEKRGDVVGAETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTRADYGRFLAMVENNLEDALENLREAIRCDPDCTTAQFNLGKLLLQRRRIGPASERSVGIRAQAAGGDVREAKALLRKVIRDSEEHSGARLCLAHTLAEEGDFEEAAKLCRAALKGTACTDVAAMSNLAALLGRNGMSDTVIIT 476
            M NE SMVGQDQLAV SVESSFRAAVAKQE+VFTLTALAHLLADLG+NDEA SFF+KALKCPHHATKHGSPSSDGETRGLAMGWYAALVEGNGSEGA KAEGLYKRAL+INDRDALAMGNYAVFLHKIKRDHRAAAT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQ CTSAPLLDKIEGLYKRAVHADPVNANNFSNFGLFLAEKRGDVVGAE XXXXXXXXXXXXXXXXXXXX                                                                 LTRADYGRFLAMVENNLE ALENLREAIRCDPDCTTAQFNLGKLLLQRRR  PASE S GIR +AAGGD REAK LLRKVIRD+EEHSGA+LCLAH LAEEGDFE+AA LCRAALKGTACTDVAAMSNLAALLGRNGMSDTVI T
Sbjct:    1 MPNESSMVGQDQLAVDSVESSFRAAVAKQEDVFTLTALAHLLADLGRNDEAGSFFEKALKCPHHATKHGSPSSDGETRGLAMGWYAALVEGNGSEGAVKAEGLYKRALRINDRDALAMGNYAVFLHKIKRDHRAAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESLGNLAVLLHGQLCTSAPLLDKIEGLYKRAVHADPVNANNFSNFGLFLAEKRGDVVGAEAXXXXXXXXXXXXXXXXXXXXVLLDSSLKQQEAKQLFERAVRSSPSDA--------------------------------------LTRADYGRFLAMVENNLEGALENLREAIRCDPDCTTAQFNLGKLLLQRRRTEPASEGSGGIRRKAAGGDAREAKVLLRKVIRDNEEHSGAQLCLAHALAEEGDFEDAANLCRAALKGTACTDVAAMSNLAALLGRNGMSDTVIAT 438
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BLAST of mRNA_Ecto-sp13_S_contig1517.3898.1 vs. uniprot
Match: A0A835YUW1_9STRA (Tetratricopeptide domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW1_9STRA)

HSP 1 Score: 102 bits (255), Expect = 6.830e-20
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 0 
Query:   15 VGSVESSFRAAVAKQENVFTLTALAHLLADLGQNDEAESFFDKALKCPHHATKHGSPSSDGETRGLAMGWYAALVEGNGSEGAAKAEGLYKRALQINDRDALAMGNYAVFLHKIKRD 131
            +  + + F A + +QE+VF+L+A A +L   G  D AE  F KA+     A +   P ++ ET  L +GWYA LVEG G  GAA+AE LY+RAL++  RD L+MGNYAVFLH+IKRD
Sbjct:   27 IAELRAPFDARLQQQEDVFSLSAYAQVLLATGDIDGAECHFKKAID----AGEDAGPEAE-ETLCLTLGWYAGLVEGRGKTGAAQAEALYRRALRLRPRDPLSMGNYAVFLHRIKRD 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1517.3898.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G753_ECTSI3.220e-19380.67Tetratricopeptide domain-containing protein n=1 Ta... [more]
A0A835YUW1_9STRA6.830e-2048.72Tetratricopeptide domain-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 341..361
NoneNo IPR availablePFAMPF13432TPR_16coord: 165..198
e-value: 0.0014
score: 19.3
coord: 343..385
e-value: 0.0023
score: 18.5
coord: 393..447
e-value: 1.7E-4
score: 22.2
NoneNo IPR availablePANTHERPTHR26312FAMILY NOT NAMEDcoord: 62..190
coord: 309..393
coord: 207..297
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 98..336
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 130..162
e-value: 11.0
score: 15.0
coord: 239..271
e-value: 710.0
score: 1.8
coord: 311..346
e-value: 170.0
score: 6.3
coord: 274..307
e-value: 120.0
score: 7.6
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 151..184
e-value: 23.0
score: 11.8
coord: 419..454
e-value: 380.0
score: 1.1
coord: 259..293
e-value: 380.0
score: 1.1
coord: 32..65
e-value: 11.0
score: 14.6
coord: 294..330
e-value: 18.0
score: 12.7
IPR019734Tetratricopeptide repeatPFAMPF13174TPR_6coord: 295..328
e-value: 0.0017
score: 18.8
IPR019734Tetratricopeptide repeatPFAMPF13181TPR_8coord: 260..292
e-value: 0.067
score: 13.4
coord: 36..60
e-value: 0.0061
score: 16.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 21..153
e-value: 3.7E-12
score: 48.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 271..389
e-value: 1.1E-18
score: 69.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 157..199
e-value: 3.7E-5
score: 25.5
coord: 200..270
e-value: 4.2E-8
score: 34.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 392..522
e-value: 7.2E-11
score: 43.8
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 309..482
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 32..65
score: 7.071
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 99..365
score: 30.314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1517contigEcto-sp13_S_contig1517:4106..8698 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1517.3898.1mRNA_Ecto-sp13_S_contig1517.3898.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1517 4065..8698 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1517.3898.1 ID=prot_Ecto-sp13_S_contig1517.3898.1|Name=mRNA_Ecto-sp13_S_contig1517.3898.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=536bp
MLNEFSMVGQDQLAVGSVESSFRAAVAKQENVFTLTALAHLLADLGQNDE
AESFFDKALKCPHHATKHGSPSSDGETRGLAMGWYAALVEGNGSEGAAKA
EGLYKRALQINDRDALAMGNYAVFLHKIKRDHRAAATVYEKAVEAHPTHS
SILCKYGGFVKHVENDYEKAKTLFEAAIEANPSHAESLGNLAVLLHGQPC
TSAPLLDKIEGLYKRAVHADPVNANNFSNFGLFLAEKRGDVVGAETLYKK
ARAIDPFHANSIYNYAVLLDSNLKQQERAEAMYRQCLAVNSEHSYALYNL
AVLKEETTKNGDYSEAKQLFERAVRSSPSDALTRADYGRFLAMVENNLED
ALENLREAIRCDPDCTTAQFNLGKLLLQRRRIGPASERSVGIRAQAAGGD
VREAKALLRKVIRDSEEHSGARLCLAHTLAEEGDFEEAAKLCRAALKGTA
CTDVAAMSNLAALLGRNGMSDTVIITADTLLQHASSLSPTNESLLQQQLL
FLEEVKQDKRRSEIVAAAFKKCLLLTGYRNSRDSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003107HAT
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom_sf
IPR013026TPR-contain_dom