prot_Ecto-sp13_S_contig14921.3746.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14921.3746.1
Unique Nameprot_Ecto-sp13_S_contig14921.3746.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length713
Homology
BLAST of mRNA_Ecto-sp13_S_contig14921.3746.1 vs. uniprot
Match: A0A6H5JRB6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB6_9PHAE)

HSP 1 Score: 527 bits (1357), Expect = 1.270e-173
Identity = 447/651 (68.66%), Postives = 464/651 (71.27%), Query Frame = 0
Query:   53 ENKKARVCQDSDCG---GGGRNVDSAGSVGDGGNVIRKDAGGCSSLNGRSAAVGGGASRNDAPGDAAEILGVAGRLVRTRGPWRCIFSEGRQPSASVGEARNNGTPAAAAAVMHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMIGGDGRSDSEGTQELSVVAAAVAAXADGRAGFGXXXERGDRRGGQEEGARPVREPRAERGPVYLNTATMETVREPPAELLALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSRNSKVAEAPALSHSSSNMDVDSNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAVTVARMSEAAPAVGAAAERVLQVVAXXGEXXXXXXXXXXXXXXXXXXXXXXXXXXXFVSNTRRNSRGDQAQDTQQGSPVEASMTPSTVAKAVLDGSXXXXXXXXXXXXXXXX-TWDRFSSLPTIDLSQGVASAPPDVENAGGAGGNAAVTLAATWTCAACTLTNKARRTTCEVCGTSRPKASSQQRHPSSSSLPLXXXXXXXXXXHRRAGSVSKLRLRQPARSSSITPFTSRPGNGGSASGXXXXXXAPTTSSSPQPPLSQSAATTPINDFPSVRSQERSSAP 699
            E    R+ +D DCG   GGGR V+SAG VG GGNV+R DAGGC SL GRS+ VGG ASRNDA GDAAEILGVAGRLVRTRGPWRCIFS+GRQPSASVGE RNNGT  AAAA        XXXXXXXXXXXXXX                                                AA +GGDGRS S+ TQELSVVAAA     DGRAGFG   E  DR GGQEE ARPVREP A++GPVYLNTATMETVREPPAEL+ALADQAESAGDYLVFVPSHRFVAAAAGAVPA ASS NS VA APA SH SSNMDV+SN  XXXXXXXXXXXXXXXXXXXX                       AVTVARMSEA  AVGAA ER    V    E    XXXXXXXXXXXXXXXXXXXXXX    N RRN RG+QAQDTQQGSP+EAS T STVAKAVL   XXXXXXXXXXXXXXXX TWDR SSLPTIDLSQGVASAP DVENAGG GGN AVT+A TWTC ACTLTNKARRTTCE+CGTSRPKAS Q+          XXXXXXXXXXHRR GSVSKLRLRQPARS SITPFTSRP  G     XXXXXX      SPQPPLSQ A TTPIN FPSVRSQERSS P
Sbjct:  203 ERNNPRIKRDLDCGSGGGGGRTVNSAGIVGGGGNVMRNDAGGCRSLVGRSSVVGGVASRNDAAGDAAEILGVAGRLVRTRGPWRCIFSQGRQPSASVGEVRNNGTAEAAAAA----GVMXXXXXXXXXXXXXXAAGVMRRTEGCKSAGERALRSAGGYGVERNGGCASNGVGESNGSGVGAAATVGGDGRSGSKTTQELSVVAAAAE---DGRAGFGGSGEGRDRGGGQEEAARPVREPGADQGPVYLNTATMETVREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGAVPAPASSHNSNVAAAPAFSHCSSNMDVESNXXXXXXXXXXXXXXXXXXXXXX----------------------AAVTVARMSEATSAVGAAGEREQPAVTAASESCSPXXXXXXXXXXXXXXXXXXXXXXV-GPNPRRNGRGEQAQDTQQGSPLEASTTLSTVAKAVLGXXXXXXXXXXXXXXXXXXXTWDRLSSLPTIDLSQGVASAPLDVENAGGTGGNKAVTVATTWTCVACTLTNKARRTTCELCGTSRPKASQQRXXXXX--XXXXXXXXXXXXXHRRVGSVSKLRLRQPARSPSITPFTSRPAGGXXXXXXXXXXXXXXXXXSPQPPLSQPAGTTPINGFPSVRSQERSSPP 821          
BLAST of mRNA_Ecto-sp13_S_contig14921.3746.1 vs. uniprot
Match: D8LPZ5_ECTSI (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPZ5_ECTSI)

HSP 1 Score: 288 bits (736), Expect = 2.750e-88
Identity = 222/302 (73.51%), Postives = 227/302 (75.17%), Query Frame = 0
Query:  302 METVREPPAELLALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSRNSKVAEAPALSHSSSNMDVDSNGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVAVTVARMSEAAPAVGAAAERVLQVVAXXGEXXXXXXXXXXXXXXXXXXXXXXXXXXXFV-SNTRRNSRGDQAQDTQQGSPVEASMTPSTVAKAVLDGSXXXXXXXXXXXXXXXXTWDRFSSLPTIDLSQGVASAPPDVENAGGAGGNAAVTLAATWTCAACTLTNKARRTTCEVCGTSRPKASSQQR 602
            MET REPPAEL+ALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSRNS VA AP  SH SSNMDVD NGS                                         N AVTVARMSEAA AV AAAERVLQ V   GE    XXXXXXXXXXXXXXXXXXXXXXX   SNTRRNSRG+QAQDTQQG P+EAS TPSTVAKAVL G XXXXXXXXXXXXXXX TWDR SSLPTIDLSQGVASAP DVEN GGAGGN AVT+A TWTC ACTLTNK+RRTTCEVCGTSRPKAS Q R
Sbjct:    1 METAREPPAELVALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSRNSNVAAAPVFSHRSSNMDVDGNGSNPAAASALSHNSNMDTDS-----------------------NAAVTVARMSEAASAVVAAAERVLQAVTAAGESCSPXXXXXXXXXXXXXXXXXXXXXXXXXGSNTRRNSRGEQAQDTQQGLPLEASTTPSTVAKAVL-GXXXXXXXXXXXXXXXXGTWDRLSSLPTIDLSQGVASAPVDVENGGGAGGNKAVTVATTWTCVACTLTNKSRRTTCEVCGTSRPKASQQTR 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14921.3746.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JRB6_9PHAE1.270e-17368.66RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
D8LPZ5_ECTSI2.750e-8873.51RanBP2-type domain-containing protein n=1 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 569..593
e-value: 6.4E-7
score: 39.0
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 570..595
e-value: 1.0E-6
score: 27.9
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 571..590
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 567..596
score: 9.45
NoneNo IPR availableGENE3D2.20.28.140coord: 564..609
e-value: 2.0E-8
score: 35.8
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 569..594

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14921contigEcto-sp13_S_contig14921:1..3965 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14921.3746.1mRNA_Ecto-sp13_S_contig14921.3746.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14921 1..3965 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14921.3746.1 ID=prot_Ecto-sp13_S_contig14921.3746.1|Name=mRNA_Ecto-sp13_S_contig14921.3746.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=713bp
AAAGDGSPSPEAEKFVISKEMKDGFSALIASARSKAKKRPSTNTCSNGSG
SSENKKARVCQDSDCGGGGRNVDSAGSVGDGGNVIRKDAGGCSSLNGRSA
AVGGGASRNDAPGDAAEILGVAGRLVRTRGPWRCIFSEGRQPSASVGEAR
NNGTPAAAAAVMHPSASVGEVRSNGNADTAASGAGVMRRTEGCKSAGERA
LSSAGVDGVERNGGCTSNGVGKSNGGGVDSAAMIGGDGRSDSEGTQELSV
VAAAVAAAADGRAGFGGGGERGDRRGGQEEGARPVREPRAERGPVYLNTA
TMETVREPPAELLALADQAESAGDYLVFVPSHRFVAAAAGAVPASASSRN
SKVAEAPALSHSSSNMDVDSNGSNPAAASAFSHNSSNMDADSNGSNPAAA
PAFSHNSSNMDADRNVAVTVARMSEAAPAVGAAAERVLQVVAAAGESCSP
PSSTTVVNAGTGSGGAAAAAAAAFVSNTRRNSRGDQAQDTQQGSPVEASM
TPSTVAKAVLDGSSSSSSSGRRGGGGGGGTWDRFSSLPTIDLSQGVASAP
PDVENAGGAGGNAAVTLAATWTCAACTLTNKARRTTCEVCGTSRPKASSQ
QRHPSSSSLPLDSGGGGGGGSHRRAGSVSKLRLRQPARSSSITPFTSRPG
NGGSASGAGGSTSAPTTSSSPQPPLSQSAATTPINDFPSVRSQERSSAPG
AAAAAAADKARQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR036443Znf_RanBP2_sf