prot_Ecto-sp13_S_contig14833.3683.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig14833.3683.1
Unique Name	prot_Ecto-sp13_S_contig14833.3683.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	192

Homology

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 2.680e-96
Identity = 180/198 (90.91%), Postives = 185/198 (93.43%), Query Frame = 0

Query:    1 CPSCGNNCFAFRNECNRCQTPKPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GRDDGREEEPAGKDSSCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 191
            CPSCGNNCFAFRNECNRCQTPKPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       GRDDGREEEPAG +S+CGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQA   +  GYKDQWPFSVRIYKD++TGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct:  150 CPSCGNNCFAFRNECNRCQTPKPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDDGREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQARASK-RGYKDQWPFSVRIYKDSNTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 346

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: D8LIQ1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ1_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 1.070e-79
Identity = 116/131 (88.55%), Postives = 122/131 (93.13%), Query Frame = 0

Query:   61 RDDGREEEPAGKDSSCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY 191
            RD GREEEPAG +S+CGKDCGDECDNNRVYVSGLPTTITETDLV+KFSTIGIIARIRQ  G     YKDQWPFSVRIYKD++TGKPKGDCIIKYEEPNSAHAA+RWFDGIDFKGGKIGVAMAAKPSLNNRY
Sbjct:   33 RDHGREEEPAGTESTCGKDCGDECDNNRVYVSGLPTTITETDLVEKFSTIGIIARIRQKRG-----YKDQWPFSVRIYKDDNTGKPKGDCIIKYEEPNSAHAALRWFDGIDFKGGKIGVAMAAKPSLNNRY 158

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: A0A803KS81_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803KS81_CHEQI)

HSP 1 Score: 120 bits (301), Expect = 1.150e-30
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0

Query:   72 KDSSCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAK 184
            K   C ++CGD CDN+R+Y+S LP  +   +L + F +IGI+ARI+Q  G     YKDQWP+S+++Y D D+GK KGD ++ YE+P++AH+A  +F+G D +G KI V MA K
Sbjct:   98 KVKQCDENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQKRG-----YKDQWPYSIKLYTD-DSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 204

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: A0A2K1JP98_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JP98_PHYPA)

HSP 1 Score: 122 bits (306), Expect = 3.450e-30
Identity = 95/216 (43.98%), Postives = 125/216 (57.87%), Query Frame = 0

Query:    1 CPS--CGNNCFAFRNECNRCQTPKPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------GRDDGREEEPAG---------------KDS------SCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAK 184
            CP+  CGN  FA R ECN+CQ PKP    XXXXXXX      XXXXXXXXXXXX                 R+ GR  E  G               KD+       C ++CGD CDN R+Y+SGLP  + E +L + F  IG +ARI+Q  G     YKDQWP++++IY+D ++GK KGD ++ YE+P++AH+A  +F+  + +G KI VAMAAK
Sbjct:   94 CPNVTCGNVNFARRMECNKCQAPKPQSTGXXXXXXXGYGGEQXXXXXXXXXXXXNSYDEPGHXXXXXXXYDREQGRSHESRGGXXXXXYGAQSREESKDAVDVPVKQCDENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQKRG-----YKDQWPYNIKIYQD-ESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 303

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: A9T0V1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T0V1_PHYPA)

HSP 1 Score: 121 bits (303), Expect = 8.970e-30
Identity = 88/200 (44.00%), Postives = 117/200 (58.50%), Query Frame = 0

Query:    4 CGNNCFAFRNECNRCQTPKPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRDDGREEEPAG----------------KD---SSCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAK 184
            CGN  FA R ECN+CQ  KP    XXXXXXXXX           XXXXXXX      R+ GR  E  G                KD     C ++CGD CDN R+Y+SGLP  + E +L + F  IG +AR++Q  G     YKDQWP++++IY+D ++GK KGD ++ YE+P++AH+A  +F+  + +G KI VAMAAK
Sbjct:  109 CGNVNFARRMECNKCQASKPQSAAXXXXXXXXXREGGGNSYDEGXXXXXXXRGHD--REQGRAYESRGGGYGAQPREDITVDGSKDVPVKQCDENCGDSCDNARIYISGLPLDVKEDELQELFGGIGQVARVKQKRG-----YKDQWPYNIKIYQD-ESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 300

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: A0A803LCU5_CHEQI (RRM domain-containing protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LCU5_CHEQI)

HSP 1 Score: 120 bits (301), Expect = 2.070e-29
Identity = 54/113 (47.79%), Postives = 79/113 (69.91%), Query Frame = 0

Query:   72 KDSSCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAK 184
            K   C ++CGD CDN+R+Y+S LP  +   +L + F +IGI+ARI+Q  G     YKDQWP+S+++Y D D+GK KGD ++ YE+P++AH+A  +F+G D +G KI V MA K
Sbjct:  197 KVKQCDENCGDSCDNSRIYISNLPPDVAIEELRELFGSIGIVARIKQKRG-----YKDQWPYSIKLYTD-DSGKNKGDGVLSYEDPSAAHSARGFFNGYDIRGHKINVTMAEK 303

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: A9U3C2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U3C2_PHYPA)

HSP 1 Score: 122 bits (306), Expect = 2.570e-29
Identity = 95/216 (43.98%), Postives = 125/216 (57.87%), Query Frame = 0

Query:    1 CPS--CGNNCFAFRNECNRCQTPKPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------GRDDGREEEPAG---------------KDS------SCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAK 184
            CP+  CGN  FA R ECN+CQ PKP    XXXXXXX      XXXXXXXXXXXX                 R+ GR  E  G               KD+       C ++CGD CDN R+Y+SGLP  + E +L + F  IG +ARI+Q  G     YKDQWP++++IY+D ++GK KGD ++ YE+P++AH+A  +F+  + +G KI VAMAAK
Sbjct:   94 CPNVTCGNVNFARRMECNKCQAPKPQSTGXXXXXXXGYGGEQXXXXXXXXXXXXNSYDEPGHXXXXXXXYDREQGRSHESRGGXXXXXYGAQSREESKDAVDVPVKQCDENCGDSCDNARIYISGLPLDVKEDELRELFGGIGQVARIKQKRG-----YKDQWPYNIKIYQD-ESGKNKGDAVLSYEDPHAAHSAGGFFNDYEMRGHKIKVAMAAK 303

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: UPI00053F9F2B (transcription initiation factor TFIID subunit 15b n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F9F2B)

HSP 1 Score: 122 bits (305), Expect = 2.670e-29
Identity = 57/117 (48.72%), Postives = 80/117 (68.38%), Query Frame = 0

Query:   68 EPAGKDSSCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAK 184
            +P  K   C ++CGD CDN+R+Y+S LP  ++  +L D F  IG +ARI+Q  G     YKDQWP+S+++Y D D GK KGD ++ YE+P++AHAA  +F+G D +G KI VAMA K
Sbjct:  298 DPPAKVKQCDENCGDSCDNSRIYISNLPPDVSIDELRDLFGNIGTVARIKQKRG-----YKDQWPWSIKLYTD-DNGKNKGDGVLSYEDPSAAHAAGGFFNGHDIRGYKINVAMAEK 408

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: A0A835HAE2_9MAGN (Uncharacterized protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HAE2_9MAGN)

HSP 1 Score: 120 bits (301), Expect = 5.520e-29
Identity = 57/118 (48.31%), Postives = 80/118 (67.80%), Query Frame = 0

Query:   67 EEPAGKDSSCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAK 184
            E PA K   C ++CGD CDN R+Y+S LP  +T  +L + FS IG +ARI+Q  G     YKDQWP+S++IY D D+GK KGD ++ YE+P++AH+A  +F+  + +G KI V MA K
Sbjct:  243 EVPAEKVKQCDENCGDTCDNARIYISNLPADVTTDELQELFSGIGQVARIKQKRG-----YKDQWPYSIKIYTD-DSGKSKGDAVLSYEDPSAAHSAGGFFNNYELRGHKITVGMAEK 354

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BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Match: A0A8B9AQ80_PHODC (transcription initiation factor TFIID subunit 15b n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AQ80_PHODC)

HSP 1 Score: 121 bits (303), Expect = 7.280e-29
Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = 0

Query:   68 EPAGKDSSCGKDCGDECDNNRVYVSGLPTTITETDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDCIIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAK 184
            EP+GK   C ++CGD CDN+R+Y+S LP  +T  +L D F  IG + RI+Q  G     YKDQWP++++IY D D+G  KGD ++ YE+P++AH+A  +F+  D +G KI VAMA K
Sbjct:  330 EPSGKIKQCDENCGDTCDNSRIYISNLPPDVTTDELRDLFGGIGQVGRIKQKRG-----YKDQWPWNIKIYTD-DSGNYKGDAVLSYEDPSAAHSAGGFFNSYDMRGYKINVAMAEK 440

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig14833.3683.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L8L8_9PHAE	2.680e-96	90.91	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LIQ1_ECTSI	1.070e-79	88.55	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A803KS81_CHEQI	1.150e-30	47.79	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
A0A2K1JP98_PHYPA	3.450e-30	43.98	Uncharacterized protein n=2 Tax=Physcomitrium pate...	[more]
A9T0V1_PHYPA	8.970e-30	44.00	Predicted protein n=1 Tax=Physcomitrium patens Tax...	[more]
A0A803LCU5_CHEQI	2.070e-29	47.79	RRM domain-containing protein n=1 Tax=Chenopodium ...	[more]
A9U3C2_PHYPA	2.570e-29	43.98	Predicted protein n=1 Tax=Physcomitrium patens Tax...	[more]
UPI00053F9F2B	2.670e-29	48.72	transcription initiation factor TFIID subunit 15b ...	[more]
A0A835HAE2_9MAGN	5.520e-29	48.31	Uncharacterized protein n=1 Tax=Coptis chinensis T...	[more]
A0A8B9AQ80_PHODC	7.280e-29	47.86	transcription initiation factor TFIID subunit 15b ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..180 e-value: 3.6E-9 score: 46.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 134..176 e-value: 6.5E-5 score: 22.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 87..184 score: 12.543
None	No IPR available	GENE3D	4.10.1060.10		coord: 1..26 e-value: 5.3E-6 score: 27.5
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..189 e-value: 2.2E-21 score: 78.5
IPR034870	TAF15/EWS/TLS family	PANTHER	PTHR23238	RNA BINDING PROTEIN	coord: 82..185 coord: 1..68
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 36..182

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig14833	contig	Ecto-sp13_S_contig14833:257..3625 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig14833.3683.1	mRNA_Ecto-sp13_S_contig14833.3683.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig14833 257..3625 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig14833.3683.1 ID=prot_Ecto-sp13_S_contig14833.3683.1|Name=mRNA_Ecto-sp13_S_contig14833.3683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
CPSCGNNCFAFRNECNRCQTPKPSGGGGGGGGGGRGRDERSPPRRRERSR
SRSRDRGGGGRDDGREEEPAGKDSSCGKDCGDECDNNRVYVSGLPTTITE
TDLVDKFSTIGIIARIRQASGFRCAGYKDQWPFSVRIYKDNDTGKPKGDC
IIKYEEPNSAHAAMRWFDGIDFKGGKIGVAMAAKPSLNNRY*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034870	TET_fam
IPR035979	RBD_domain_sf