prot_Ecto-sp13_S_contig14816.3673.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14816.3673.1
Unique Nameprot_Ecto-sp13_S_contig14816.3673.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length488
Homology
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: A0A6H5K435_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K435_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 1.630e-120
Identity = 216/249 (86.75%), Postives = 222/249 (89.16%), Query Frame = 0
Query:  240 KTKSNPEPQEISLDEAIALVLEKRSKDGPAAAKARVRARGKKVXXXXXXXXXXXXXXXXXXXXXXXXVVKSKNLGGGEKRPLSGFFRFCKESRELHTAATATAGTEAAGVNLNAETLSARWKGLGDEERGRFNAAAAAALEQWKADNAKSESGRSXXXXXXXXXXXXKNRVPQPKNAYILFSSERRPGLKEEVGGKGLTAVEMTKKLAQEWRELEGSSVREEYARRAALLREAWLKEKEEVASAERVAP 488
            KTKSNPEP+EISLDEAIALVLEKRSKDGPAAAKAR  ARGK V         XXXXXXXXXXXXXXX VK+KNLGGG+KRPLSGFFRFCKESRELHTAATATAG EAAGVNLNAETLSARWKGLGDE+RGRFNAAAAAALEQWKADNAK+ESGRS            KNRVPQPKNAYILFSSERRPGLKEEVGG+GLTAVEMTKKLAQEWRELEGSSVREEYARRAALLREAWLKEKEE ASAERVAP
Sbjct:    5 KTKSNPEPEEISLDEAIALVLEKRSKDGPAAAKAR--ARGKTVSKGGTAASTXXXXXXXXXXXXXXXXVKNKNLGGGDKRPLSGFFRFCKESRELHTAATATAGAEAAGVNLNAETLSARWKGLGDEDRGRFNAAAAAALEQWKADNAKAESGRSSGSSSGGRKGSGKNRVPQPKNAYILFSSERRPGLKEEVGGEGLTAVEMTKKLAQEWRELEGSSVREEYARRAALLREAWLKEKEEAASAERVAP 251          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: A0A6H5KCV2_9PHAE (TOP1Ac domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV2_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 3.010e-93
Identity = 180/196 (91.84%), Postives = 185/196 (94.39%), Query Frame = 0
Query:    1 MGRYGPFLECGGIQAAASAHVSTANKKDPTDLSLPSQPTPTELLQQRGEGGGQELGSASSDGETAGRGSHPXXXXXXXXXXNDTVVYSAEDVIAFGLGANATEDGXXXXXXXXXXXDRGVGTWYSAVSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQ 196
            MGRYGPFLECGGIQAAASAHVSTANKKDPTDLSLPSQPTPT+LLQQRG GGGQELG++S DGE AGRG HPXXXXXX    NDTVVYSAEDVIAFGLGANATE+GXXXXXXXXXX D GVGTWYSAVSLERAVGLLSLPRVVCESHPTEGGAIE GVGRFGVW+RHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQ
Sbjct:  579 MGRYGPFLECGGIQAAASAHVSTANKKDPTDLSLPSQPTPTDLLQQRG-GGGQELGASSPDGEAAGRGPHPXXXXXXSG--NDTVVYSAEDVIAFGLGANATENGXXXXXXXXXX-DGGVGTWYSAVSLERAVGLLSLPRVVCESHPTEGGAIEAGVGRFGVWVRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQ 770          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: D8LDU2_ECTSI (DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU2_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 2.580e-80
Identity = 155/177 (87.57%), Postives = 158/177 (89.27%), Query Frame = 0
Query:    1 MGRYGPFLECGGIQAAASAHVSTANKKDPTDLSLPSQPTPTELLQQRGEGGGQELGSASSDGETAGRGSHPXXXXXXXXXXNDTVVYSAEDVIAFGLGANATEDGXXXXXXXXXXXDRGVGTWYSAVSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGI 177
            MGRYGPFLECGGIQAAASAHVSTANKKDPTDLSLPSQPTPT+LLQ RG GGGQE GS+S DGETAGRG HP          NDTVVYSAEDVIAFGLGANATEDG  XXXXXXXXXD GVGTWYSAVSLERAVGLLSLPRVVCESHPTEGGAIE GVGRFGVW+RHKDSYKNVPAGI
Sbjct:  877 MGRYGPFLECGGIQAAASAHVSTANKKDPTDLSLPSQPTPTDLLQHRG-GGGQEPGSSSPDGETAGRGPHPPAAAVASG--NDTVVYSAEDVIAFGLGANATEDGGGXXXXXXXXXDGGVGTWYSAVSLERAVGLLSLPRVVCESHPTEGGAIEAGVGRFGVWVRHKDSYKNVPAGI 1050          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: A0A537UFQ1_9PROT (DNA topoisomerase 1 n=4 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537UFQ1_9PROT)

HSP 1 Score: 82.4 bits (202), Expect = 6.990e-13
Identity = 54/157 (34.39%), Postives = 86/157 (54.78%), Query Frame = 0
Query:  127 VSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQRNKDRPTIEIGMLDGE------KVFIKYAKYGRCISCDGTVVMLPPQYRKTKSNPEPQEISLDEAIALVLEKRSKDGPAAAKARVRA 277
            V L+RA+GLLSLPR + + +P +G  I  GVGRFG +++H  +Y N+ AG DVL +    AV L DE   + K     + G   G+      ++ +K  +YG   S DG    LP  +        P+ I+L++A+ L+  +R++ G   A ++V+A
Sbjct:  707 VDLDRALGLLSLPREIGK-YPGDGEPIMAGVGRFGPYVQHGKTYANLTAGEDVLTIGLNRAVALIDEKRAKRKSGRGADPGRALGDHPEKGGRIVVKSGRYGPYASHDGVNATLPADFS-------PETITLEQAVGLLEARRARGGKRRAGSKVQA 855          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: A0A090N6Z9_AFIFE (DNA topoisomerase 1 n=2 Tax=Afipia felis TaxID=1035 RepID=A0A090N6Z9_AFIFE)

HSP 1 Score: 79.7 bits (195), Expect = 3.400e-12
Identity = 54/148 (36.49%), Postives = 80/148 (54.05%), Query Frame = 0
Query:  127 VSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQRNKDR-----PTIEIGMLD--GEKVFIKYAKYGRCISCDGTVVMLPPQYRKTKSNPEPQEISLDEAIALVLEKRSKDG 267
            V L+ A+ LLSLPR V   HP +G  I  G+GRFG ++RH  +Y ++ AG DV ++    AV L  E I +   R     P  E+G     G K+ +K  +YG  ++ DG    +P        + EP +I+L+EAIAL+  + +K G
Sbjct:  317 VELDLALKLLSLPRDV-GPHPEDGEIITAGIGRFGPFVRHGKTYASLEAGDDVYNIGLNRAVTLIAEKIAKGPSRRFGADPGKEVGDYPARGGKIMLKKGRYGAYVTIDGINATIP-------DDKEPDQITLEEAIALIEARATKTG 456          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: A0A1J5R6B9_9ZZZZ (DNA topoisomerase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5R6B9_9ZZZZ)

HSP 1 Score: 80.1 bits (196), Expect = 3.770e-12
Identity = 60/152 (39.47%), Postives = 81/152 (53.29%), Query Frame = 0
Query:  125 SAVSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQRNKDRPTIEIGM--LDGEKVFIKYAKYGRCISCDGTVVMLPPQYRKTKSNPEPQEISLDEAIALVLEKRSKDGPAAAKAR 274
            +AV+LE A+ LLSLPR +  +HP  G  I  GVGRFG +++H D+YK++    DVL V    AV L   + Q     P  E+G    DG+ V +   ++G  +S  G    LP             EISL+EA+AL+  K  K G AA KAR
Sbjct:  703 AAVTLEVALKLLSLPRQI-GTHPESGLMISAGVGRFGPYLKHGDAYKSLGREDDVLSVGMNRAVEL---LAQVKPKVPARELGAHPADGKPVTLSSGRFGPYVSHGGINANLPRGR---------DEISLEEALALLAAKAEKQGKAAPKAR 841          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: B6JFU9_AFIC5 (DNA topoisomerase 1 n=4 Tax=Bradyrhizobiaceae TaxID=41294 RepID=B6JFU9_AFIC5)

HSP 1 Score: 77.8 bits (190), Expect = 2.070e-11
Identity = 52/140 (37.14%), Postives = 75/140 (53.57%), Query Frame = 0
Query:  127 VSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQRNKDR-----PTIEIGMLD--GEKVFIKYAKYGRCISCDGTVVMLPPQYRKTKSNPEPQEISLDEAIALV 259
            V L+ A+ LLSLPR V   HP +G  I  G+GRFG ++RH  +Y ++ AG DV  +    AV L  E I +   R     P  E+G     G K+ +K  +YG  ++ DG    +P        + EP +I+L+EAIAL+
Sbjct:  698 VELDLAIKLLSLPRDV-GPHPEDGEIITAGIGRFGPFVRHGKTYASLEAGDDVYTIGLNRAVTLIAEKIAKGPSRRFGADPGKEVGDYPARGGKIMLKKGRYGAYVTIDGINATIP-------DDKEPDQITLEEAIALI 829          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: A0A369TBQ9_9PROT (DNA topoisomerase 1 n=1 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369TBQ9_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.720e-11
Identity = 47/151 (31.13%), Postives = 80/151 (52.98%), Query Frame = 0
Query:  125 SAVSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQRNKDRPTIEIGM--LDGEKVFIKYAKYGRCISCDGTVVMLPPQYRKTKSNPEPQEISLDEAIALVLEKRSKDGPAAAKA 273
            +AV L+ A+ LLSLPR +C+ HP +G  ++ G+GR+G +I+H  +Y ++P   DVL V +  A+ +  E  ++ + R   EIG    +G  +     +YG  +    T   LP          EP+ ++L +A+ L+ E+  K G    K+
Sbjct:  702 TAVDLQTALALLSLPREICK-HPEDGEPVQAGIGRYGPYIKHGSAYVSLPDDDDVLTVGQNRALTILAESPKKRRARQQTEIGEHPREGGPITASVGRYGPYVKHGRTFASLP-------KGTEPESVTLQQAVDLLDEQAKKKGNGKTKS 844          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: A0A1Q3VYX4_9BRAD (DNA topoisomerase 1 n=1 Tax=Afipia sp. 64-13 TaxID=1895701 RepID=A0A1Q3VYX4_9BRAD)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-10
Identity = 53/148 (35.81%), Postives = 76/148 (51.35%), Query Frame = 0
Query:  127 VSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQRNKDR-----PTIEIGMLD--GEKVFIKYAKYGRCISCDGTVVMLPPQYRKTKSNPEPQEISLDEAIALVLEKRSKDG 267
            V LE A+ LLSLPR V   HP +G  I  G+GRFG ++RH  +Y ++ AG DV  +    AV L  E I +   R     P   +G     G  + +K  +YG  ++ DG    +P          +P+ I+L EAIAL+ E+ +K G
Sbjct:  698 VELELAIKLLSLPRDV-GPHPEDGEIITAGIGRFGPFVRHGKTYASLEAGDDVYAIGLNRAVTLIAEKIAKGPGRRFGADPGKPVGDYPARGGAIMLKKGRYGAYVTIDGINATIPDSM-------DPENITLQEAIALIEERAAKGG 837          
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Match: UPI001BACB633 (type I DNA topoisomerase n=1 Tax=Caulobacter sp. S6 TaxID=2823693 RepID=UPI001BACB633)

HSP 1 Score: 74.7 bits (182), Expect = 1.910e-10
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 0
Query:  125 SAVSLERAVGLLSLPRVVCESHPTEGGAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQ------RNKDRPTI-EIGM--LDGEKVFIKYAKYGRCISCDGTVVMLPPQYRKTKSNPEPQEISLDEAIALVLEKRSKDG---PAAAKA 273
            + + LE+A+ LLSLPR V  +HP +GG I  G+GR+G +++H  +Y N+P   +V +V    AV +  E         R      + E+G    DGE V I   ++G  I   GT   +P          +PQE++L+EA+AL+ E+ +K G   PA  KA
Sbjct:  689 AGMDLEKALRLLSLPREV-GAHPDDGGMILAGIGRYGPYVQHNGTYANLPTADEVFEVGLNRAVTVLAEKRAGGGRGARGAGAAALKELGAHPADGEPVKILAGRFGPYIKHGGTNANVP-------RGKDPQELTLEEAVALLAEREAKGGGKKPAKGKA 841          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14816.3673.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K435_9PHAE1.630e-12086.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCV2_9PHAE3.010e-9391.84TOP1Ac domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LDU2_ECTSI2.580e-8087.57DNA topoisomerase (Fragment) n=1 Tax=Ectocarpus si... [more]
A0A537UFQ1_9PROT6.990e-1334.39DNA topoisomerase 1 n=4 Tax=Alphaproteobacteria ba... [more]
A0A090N6Z9_AFIFE3.400e-1236.49DNA topoisomerase 1 n=2 Tax=Afipia felis TaxID=103... [more]
A0A1J5R6B9_9ZZZZ3.770e-1239.47DNA topoisomerase n=1 Tax=mine drainage metagenome... [more]
B6JFU9_AFIC52.070e-1137.14DNA topoisomerase 1 n=4 Tax=Bradyrhizobiaceae TaxI... [more]
A0A369TBQ9_9PROT2.720e-1131.13DNA topoisomerase 1 n=1 Tax=Ferruginivarius sedimi... [more]
A0A1Q3VYX4_9BRAD1.120e-1035.81DNA topoisomerase 1 n=1 Tax=Afipia sp. 64-13 TaxID... [more]
UPI001BACB6331.910e-1034.78type I DNA topoisomerase n=1 Tax=Caulobacter sp. S... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 316..391
e-value: 2.5E-5
score: 33.7
coord: 409..482
e-value: 1.7E-9
score: 47.5
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 411..479
e-value: 1.6E-7
score: 31.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 317..390
score: 9.601
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 410..481
score: 12.34
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 301..399
e-value: 1.0E-8
score: 37.3
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 407..481
e-value: 4.2E-12
score: 48.3
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 399..478
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 312..385
IPR025589Topoisomerase C-terminal repeatPFAMPF13368Toprim_C_rptcoord: 146..193
e-value: 9.6E-8
score: 31.9
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 272..390
coord: 396..481

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14816contigEcto-sp13_S_contig14816:769..3845 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14816.3673.1mRNA_Ecto-sp13_S_contig14816.3673.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14816 2..3845 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14816.3673.1 ID=prot_Ecto-sp13_S_contig14816.3673.1|Name=mRNA_Ecto-sp13_S_contig14816.3673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=488bp
MGRYGPFLECGGIQAAASAHVSTANKKDPTDLSLPSQPTPTELLQQRGEG
GGQELGSASSDGETAGRGSHPPAAAAAAASGNDTVVYSAEDVIAFGLGAN
ATEDGGGGGGGGNGGGDRGVGTWYSAVSLERAVGLLSLPRVVCESHPTEG
GAIEVGVGRFGVWIRHKDSYKNVPAGIDVLDVDEALAVRLTDEMIQRNKD
RPTIEIGMLDGEKVFIKYAKYGRCISCDGTVVMLPPQYRKTKSNPEPQEI
SLDEAIALVLEKRSKDGPAAAKARVRARGKKVSKGGTAASTASATGTGQR
KKKGGRVVKSKNLGGGEKRPLSGFFRFCKESRELHTAATATAGTEAAGVN
LNAETLSARWKGLGDEERGRFNAAAAAALEQWKADNAKSESGRSSGSSSG
GGKGSGKNRVPQPKNAYILFSSERRPGLKEEVGGKGLTAVEMTKKLAQEW
RELEGSSVREEYARRAALLREAWLKEKEEVASAERVAP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf
IPR025589Toprim_C_rpt