prot_Ecto-sp13_S_contig1312.2541.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1312.2541.1
Unique Nameprot_Ecto-sp13_S_contig1312.2541.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length240
Homology
BLAST of mRNA_Ecto-sp13_S_contig1312.2541.1 vs. uniprot
Match: A0A6H5KAL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAL4_9PHAE)

HSP 1 Score: 271 bits (694), Expect = 2.010e-89
Identity = 149/173 (86.13%), Postives = 156/173 (90.17%), Query Frame = 0
Query:   35 ARGCAICAIIVHVGALLVFGWLWLWQWIASILAFIMCGVLLCMYDRCAYITGGILFAVAAVFDILVLLEWIAIYNSLQDLVDDSDXXXXXXXXXXXXXXXEWEDWRNTILWFALPPFLGALSLGLGALFSLASLCFWKDAGSPAAAMAATTAHVPAPQHTVSATYQPQNEHQH 207
            AR CAICAIIVHVGALLVFGWLW+WQWIAS+LAFIMCGVLLCMYDRCAYITGGI FAVAAVFDILVL+ WIAIYN+LQD     D  XXXXXXXXXXX  EWEDW+N ILWFAL PFLGALSLGLGA+FS  SLCFWKDAGSPAAAMA TTAHVPAPQ+TVSATYQPQNEHQH
Sbjct:    9 ARACAICAIIVHVGALLVFGWLWVWQWIASVLAFIMCGVLLCMYDRCAYITGGICFAVAAVFDILVLVGWIAIYNNLQD-----DYYXXXXXXXXXXXDGEWEDWKNVILWFALLPFLGALSLGLGAVFSFTSLCFWKDAGSPAAAMAVTTAHVPAPQNTVSATYQPQNEHQH 176          
BLAST of mRNA_Ecto-sp13_S_contig1312.2541.1 vs. uniprot
Match: A0A6H5JWS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS2_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 6.560e-36
Identity = 80/189 (42.33%), Postives = 111/189 (58.73%), Query Frame = 0
Query:   19 PGCCGVPKEAPCSVTGARGCAICAIIVHVGALLVFGWLWLWQWIASILAFIMCGVLLCMYDRCAYITGGILFAVAAVFDILVLLEWIAIYNSLQDLVDDSDXXXXXXXXXXXXXXXEWEDWRNTILWFALPPFLGALSLGLGALFSLASLCFWKDAGSPAAAMAATTAHVP-APQHTVSATYQPQNEHQ 206
            PGCCGVP EAP +VT ARGCAI +I++H  +  + G  ++WQ  A  +AF+M G+LLC Y+R  Y+ G + FA+ AVFD+L +L WI    +  D + DSD               E  D    +LW A+PPFLGA+++GLGA+F+  ++  WK  G  A        HVP APQ T   T QPQ++ +
Sbjct:   23 PGCCGVPPEAPRAVTAARGCAILSIVIHAISFYLGGGFFVWQRNACFIAFVMGGLLLCFYERYMYVIGSLGFALCAVFDVLAVLRWI----TRDDEIFDSDDDYNTTFQVDDTQSEESSD-STILLWLAVPPFLGAIAMGLGAIFTFTAIFAWKYGGGTA------IPHVPVAPQPTFDFTKQPQSQQE 200          
BLAST of mRNA_Ecto-sp13_S_contig1312.2541.1 vs. uniprot
Match: D7G5D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D4_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.570e-22
Identity = 58/164 (35.37%), Postives = 86/164 (52.44%), Query Frame = 0
Query:   15 VESSPGC-CGVPKEAPCSVTGARGCAICAIIVHVGALLVFGWLWLWQWIASILAFIMCGVLLCMYDRCAYITGGILFAVAAVFDILVLLEWIAIYNSLQDLVDDSDXXXXXXXXXXXXXXXEWEDWRNTILWFALPPFLGALSLGLGALFSLASLCFWKDAGSP 177
            V +  GC C VP      V G+RG  I  I+VH  ALL FGW+    W+AS+++FIM G+LLC +++C YI  G LF +  +FD++ +  WIA   S     + S+                     + + WFALP  LGALS  +  +F   ++C W+ +G+P
Sbjct:   19 VHAQNGCSCTVPPNVSGHVRGSRGATIATIVVHAIALLAFGWILWGIWLASLISFIMGGILLCQFNKCTYIVAGSLFILGCIFDLVSMAAWIAYATSDNYYYNGSELS-------------------SAVGWFALPAALGALSFIVAIVFIFLAICNWEKSGAP 163          
BLAST of mRNA_Ecto-sp13_S_contig1312.2541.1 vs. uniprot
Match: D7FYM8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYM8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 5.480e-21
Identity = 52/139 (37.41%), Postives = 78/139 (56.12%), Query Frame = 0
Query:   35 ARGCAICAIIVHVGALLVFGWLWLWQWIASILAFIMCGVLLCMYDRCAYITGGILFAVAAVFDILVLLEWIAIYNSLQDLVDDSDXXXXXXXXXXXXXXXEWEDWRNTILWFALPPFLGALSLGLGALFSLASLCFWKD 173
            AR C   +I++H  +L V GW W WQ  A+   F + G++LC+YD+  Y  GG+ FAV A+FD+  +L WI   +++ +  D  D                      T LW+ALPP LGA+++GLGA+FS  ++ FW+D
Sbjct:   14 ARLCIALSIVIHTISLFVEGWYWPWQRNAAFGVFAVGGLVLCIYDQYMYAIGGVGFAVCALFDLFAVLRWITDDDNIVEGDDSFDGSSEG----------------TTALWYALPPLLGAITMGLGAIFSFTAVFFWED 136          
BLAST of mRNA_Ecto-sp13_S_contig1312.2541.1 vs. uniprot
Match: A0A6H5K1J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J6_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.340e-20
Identity = 61/175 (34.86%), Postives = 90/175 (51.43%), Query Frame = 0
Query:   36 RGCAICAIIVHVGALLVFGWLWLWQWIASILAFIMCGVLLCMYDRCAYITGGILFAVAAVFDILVLLEWIAIYNSLQDLVDDSDXXXXXXXXXXXXXXXEWEDWRNTILWFALPPFLGALSLGLGALFSLASLCFWKDAGSPAAA--MAATTAHVPAPQHTVSATY-----QPQN 203
            RG  I +I+VH  ALL FGW+    W+AS+++FIM G+LLC +++C YI  G LF +  +FD++ +  WIA+  S     + +                      + + WFALP  LGALS  +  +F   ++C W+ +G+P A     A  A V AP H V   +     QPQN
Sbjct:   29 RGATIASIVVHAIALLAFGWIAWSVWLASLISFIMGGILLCQFNKCTYIVAGSLFILGCIFDLVAMAAWIALATSDNYYYNGTQLT-------------------SAVGWFALPAALGALSFIIAIVFIFLAICNWEKSGAPDAMGPPMAGGAQVTAPNHGVQMKHHAPQAQPQN 184          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1312.2541.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAL4_9PHAE2.010e-8986.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS2_9PHAE6.560e-3642.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D4_ECTSI1.570e-2235.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FYM8_ECTSI5.480e-2137.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K1J6_9PHAE1.340e-2034.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..142
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 88..107
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 34..52
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 143..171
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 58..76
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 77..87
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 172..239
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 53..57
NoneNo IPR availableTMHMMTMhelixcoord: 85..107
NoneNo IPR availableTMHMMTMhelixcoord: 61..78
NoneNo IPR availableTMHMMTMhelixcoord: 35..57
NoneNo IPR availableTMHMMTMhelixcoord: 143..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1312contigEcto-sp13_S_contig1312:2522..7258 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1312.2541.1mRNA_Ecto-sp13_S_contig1312.2541.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1312 2307..8546 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1312.2541.1 ID=prot_Ecto-sp13_S_contig1312.2541.1|Name=mRNA_Ecto-sp13_S_contig1312.2541.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MEVHQQHQQHVIHVVESSPGCCGVPKEAPCSVTGARGCAICAIIVHVGAL
LVFGWLWLWQWIASILAFIMCGVLLCMYDRCAYITGGILFAVAAVFDILV
LLEWIAIYNSLQDLVDDSDDYYNYYDDDYYNNDDEWEDWRNTILWFALPP
FLGALSLGLGALFSLASLCFWKDAGSPAAAMAATTAHVPAPQHTVSATYQ
PQNEHQHHERYHHQQHKAANPQQAPPSASERPPPPGYYQ*
back to top