prot_Ecto-sp13_S_contig1298.2444.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1298.2444.1
Unique Nameprot_Ecto-sp13_S_contig1298.2444.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length943
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1298.2444.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 1228 bits (3176), Expect = 0.000e+0
Identity = 777/924 (84.09%), Postives = 787/924 (85.17%), Query Frame = 0 
Query:    1 MSHGGRRSGGGGPRISYTSRSAPIPINREKRGGGGSSPRRHPAVQEPEPHSAYPDLGDVGFEPDLELEKGRDDSEEDFNTK---NGDGEGASGNMSGRYAPSPRTGAGGKGGIIXXXXXXXXXXXXXXXXXXGGGG----EAWRDPRACCNDSDDWAIGGGLDEGPEMGDDRDCTGWGRGGSSARGGGIPTGGDRFSRGNGSGAICIGGGGSSCSLGHSGWVTTTEELRGDGGGNYFGGEDLALGKSLEHDHGFFNHKEDALYRKVEARSTKSSKNKGLGRGGSTGSLAGRDXXXXXXXXSVGRNQRKSGGSSLLKISDSVSTSSSVGEGCDGGGGKKRSG-KINRSASASGGKKDSLKEGHDFDAPAGGARKINRSQSLLLVPKQPLSQANMASVRKNRTKLRRQEVRKAMKDKEDRCDVEKTAVVGLWQTSGGEWTLAPEKSNESWDARASLSNGGDGGGHSSSWREHPNPLLQEE-GILGRIKKLASCCWSRANRPLDRMIRKAQTSLAKALRKGGKQVLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGNSSSVASGAKTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGVAGGVVSKDGEGGAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRALLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVESKHRDDDDDMVAEEVHVEVPNLVKVIFVGHADAGKSEVVKGLLSTKPHTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGTSASGRVRGSGTKTATARSG 915
            MSHGGRRSGGGGPRISYTSRSAPIPIN EKRGGGG SPRRHPAVQEPEP SAYPDL DVGFEPDLELE GRDDSEEDFNTK   +G G GASGN+SGRYAPSPRTGAGG  GII                 X        EAWRDPRACCNDSDDWAIGGGLDEGPEM DDRDCTGWGRGGSSARGGGIPTGG R S GNGSGAICI    SSCSLGH GWVTTTEELRGDGG N FGGEDLALGKSLEHDHGFFNHKEDALYRKVEARSTKSSKNKGLGRGGS+GSLAG  XXXXXXXXS GRN RKSGGSSLLKI DSVSTSSSVG GCDG    K SG KINRSASASGGKKD LK G DFDA AG ARKINRSQSLLLVPKQP SQ NMASVRKNRTKLR QEVRKAMKDKEDRC+VEKTA VGLWQTSGGEWTLAPEKS+ESWDARASL NGGDGGGHSSSW+  PN LLQEE GILGRIKKLA       NRPLD M+RKAQTSLAKALRKGGK+VLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGN+SSVASGAKTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGV G  VSKDGEGG GNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVESKHRDDDDDMVAEEVHVEVPNLVKVIF+GHADAGKSEVVKGLLSTKPHTNN                                           XXXXXXXX EGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGT ASGRVRGSGTKT TARSG
Sbjct:    1 MSHGGRRSGGGGPRISYTSRSAPIPINPEKRGGGGPSPRRHPAVQEPEPQSAYPDLADVGFEPDLELE-GRDDSEEDFNTKKDDDGSGGGASGNISGRYAPSPRTGAGGNDGIISFSPAFSPSPVRGPHGGXXXXXXXXXEAWRDPRACCNDSDDWAIGGGLDEGPEMADDRDCTGWGRGGSSARGGGIPTGGGRLSSGNGSGAICIXXXXSSCSLGHGGWVTTTEELRGDGGRNGFGGEDLALGKSLEHDHGFFNHKEDALYRKVEARSTKSSKNKGLGRGGSSGSLAGXXXXXXXXXXSWGRNGRKSGGSSLLKIGDSVSTSSSVGGGCDGXXXXKGSGNKINRSASASGGKKDPLKAGLDFDALAGSARKINRSQSLLLVPKQPPSQTNMASVRKNRTKLRSQEVRKAMKDKEDRCNVEKTAAVGLWQTSGGEWTLAPEKSDESWDARASLCNGGDGGGHSSSWQARPNRLLQEEEGILGRIKKLA-------NRPLDSMVRKAQTSLAKALRKGGKRVLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGNNSSVASGAKTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGVVGAAVSKDGEGGGGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVESKHRDDDDDMVAEEVHVEVPNLVKVIFIGHADAGKSEVVKGLLSTKPHTNNDGSIVSTPTKSTPSLSATSTPLQQPRRLGAAPRTPPLPPLPLPXXXXXXXX-EGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGTPASGRVRGSGTKTTTARSG 915
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BLAST of mRNA_Ecto-sp13_S_contig1298.2444.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 1116 bits (2886), Expect = 0.000e+0
Identity = 733/925 (79.24%), Postives = 750/925 (81.08%), Query Frame = 0 
Query:   44 VQEPEPHSAYPDLGDVGFEPDLELEKGRDDSEEDFNTK---NGDG--EGASGNMSGRYAPSPRTGAGGKGGIIXXXXXXXXXXXXXXXXXXGGGGEAWRDPRACCNDSDDWAIGGGLDEGPEMGDDRDCTGWGRGGSSARGGGIPTGGDRFSRGNGSGAICIGGGGSSCSLGHSGWVTTTEELRGDGGGNYFGGEDLALGKSLEHDHGFFNHKEDALYRKVEARSTKSSKNKGLGRGGSTGSLAGRDXXXXXXXXSVGRNQRKSGGSSLLKISDSVSTSSSVG-EGCDGGGGKKRSGKINRSASASGGKKDSLKEGHDFDAPAGGARKINRSQSLLLVPKQPLSQANMASVRKNRTKLRRQEVRKAMKDKEDRCDVEKTAVVGLWQTSGGEWTLAPEKSNESWDARASLSNGGDGGGHSSSWREHPNPLLQ-EEGILGRIKKLASCCWSR--------------------------------------------ANRPLDRMIRKAQTSLAKALRKGGKQVLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGNSSSVASGAKTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGVAGGVVSKDGEGGAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRALLPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVESKHRDDDDD--MVAEEVHVEVPNLVKVIFVGHADAGKSEVVKGLLSTKPHTNNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGTSASGRVRGSGTKTATARSG 915
            +QEPEPHSAYPDL DVGFEPDLELE GRDDSEEDF+T    NG G  EGASGN+SGRYAPSPRTGAGG GGI+                   G GEAWRD RACCNDSDDWAIGGGLDEGPEMGDDRDCTG GRGGSSARG GI TGG R SRGNGSGAICIGGGGSSCSLGH+GWVTTTEELRGDGGGN FGGEDLALGKSLEHDHGFFNHKEDALYRKVEARSTKSSKNKGLGRGGS+GSLA   XXXXXXXX      RKSGGSSLLKISDS STSSSVG              KINRSASASGGKKD+LK G DFDA AG ARKINRSQSLLLVPKQPLSQANMAS RK++TKLRRQEV+KAMKDKEDRCDVEKTA VGLWQTSGGEWTLAP+KS+ESWDARASL+NGGDGGGHSSSW+ HPN LLQ EEGILGRIKKLASC WSR                                            ANRPLD M+RKAQTSLAKALRKGGK VLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGN+ SVASG KTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGVAGGVVSKDG  GAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVE KHRDD     MVAEEV VEVPNLVKVIF+GHADAGKSEVVKGLLSTKPHTNN                                   XXXXXXXXXXX      EGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGT ASGRVRGSGTKTATARSG
Sbjct:    1 MQEPEPHSAYPDLADVGFEPDLELE-GRDDSEEDFDTNKDDNGSGGAEGASGNISGRYAPSPRTGAGGNGGIVFVSPAFSPSPVRGPHGGGSGDGEAWRDARACCNDSDDWAIGGGLDEGPEMGDDRDCTGRGRGGSSARGDGILTGGGRLSRGNGSGAICIGGGGSSCSLGHAGWVTTTEELRGDGGGNCFGGEDLALGKSLEHDHGFFNHKEDALYRKVEARSTKSSKNKGLGRGGSSGSLAXXXXXXXXXXXXXXXXGRKSGGSSLLKISDSASTSSSVGGXXXXXXXXXXXXXKINRSASASGGKKDTLKAGLDFDALAGSARKINRSQSLLLVPKQPLSQANMASERKSKTKLRRQEVKKAMKDKEDRCDVEKTAAVGLWQTSGGEWTLAPDKSDESWDARASLANGGDGGGHSSSWQAHPNRLLQAEEGILGRIKKLASCYWSRVSLGVPRGFERFLSFATSVPRQQTVVAVAAYHPRIRTLRDTGSEANRPLDSMVRKAQTSLAKALRKGGKLVLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGNNISVASGVKTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGVAGGVVSKDG--GAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLPSLEKLELSGNWIEEIRAPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAARGLDSVKRYFRDVEGKHRDDXXXXXMVAEEVQVEVPNLVKVIFIGHADAGKSEVVKGLLSTKPHTNNDSSIVSTPANSTPSLSATSTPLQQPRRLGAAPRTPXXXXXXXXXXX------EGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGTPASGRVRGSGTKTATARSG 916
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1298.2444.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWK1_ECTSI0.000e+084.09LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5J7I8_9PHAE0.000e+079.24Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 390..410
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 622..821
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 565..737
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 625..647
e-value: 18.0
score: 11.1
coord: 719..742
e-value: 52.0
score: 7.4
coord: 649..670
e-value: 27.0
score: 9.7
coord: 672..695
e-value: 0.035
score: 23.3
coord: 696..718
e-value: 77.0
score: 6.0
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 673..732
e-value: 9.2E-8
score: 31.7
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 721..742
score: 5.217
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 569..590
score: 5.425
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 674..695
score: 7.604
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 651..672
score: 7.296
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 698..720
score: 5.055
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 627..648
score: 6.241

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1298contigEcto-sp13_S_contig1298:4218..9403 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1298.2444.1mRNA_Ecto-sp13_S_contig1298.2444.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1298 390..9657 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1298.2444.1 ID=prot_Ecto-sp13_S_contig1298.2444.1|Name=mRNA_Ecto-sp13_S_contig1298.2444.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=943bp
MSHGGRRSGGGGPRISYTSRSAPIPINREKRGGGGSSPRRHPAVQEPEPH
SAYPDLGDVGFEPDLELEKGRDDSEEDFNTKNGDGEGASGNMSGRYAPSP
RTGAGGKGGIISLSPAFSPSPVRGPHGRGGGGGEAWRDPRACCNDSDDWA
IGGGLDEGPEMGDDRDCTGWGRGGSSARGGGIPTGGDRFSRGNGSGAICI
GGGGSSCSLGHSGWVTTTEELRGDGGGNYFGGEDLALGKSLEHDHGFFNH
KEDALYRKVEARSTKSSKNKGLGRGGSTGSLAGRDGGTGGGAGSVGRNQR
KSGGSSLLKISDSVSTSSSVGEGCDGGGGKKRSGKINRSASASGGKKDSL
KEGHDFDAPAGGARKINRSQSLLLVPKQPLSQANMASVRKNRTKLRRQEV
RKAMKDKEDRCDVEKTAVVGLWQTSGGEWTLAPEKSNESWDARASLSNGG
DGGGHSSSWREHPNPLLQEEGILGRIKKLASCCWSRANRPLDRMIRKAQT
SLAKALRKGGKQVLLPGLELRYPQNVAALLDDAAQAWEHGLLHPRRGGNS
SSVASGAKTPLAWTKSWSPIQVMDLSGNDLEGIDSLLMVETLPGVAGGVV
SKDGEGGAGNQSEAGGRRTAPVYPLAGLRELRLNGNMLHGLPGNMALVLP
SLEKLELSGNWIEEIRAPRALLPSLKHLDLGYNSLLELPAEICLAVPSLE
VLLLPNNLLEWLPREVVGLRHLKRLDVGRNPLTSPPVEVAARGLDSVKRY
FRDVESKHRDDDDDMVAEEVHVEVPNLVKVIFVGHADAGKSEVVKGLLST
KPHTNNNSSIVSTPAKSTPSSSATTTPLQQPRRLGAAPRTPPLPPLPPPP
PPPPDDDDEGWQVVGTGRQRSLPASNPPPNRPQHGRSEPPPHGVGTSASG
RVRGSGTKTATARSGGGGVAATGGTTGRGGGRRRRGRGGSRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt