prot_Ecto-sp13_S_contig1276.2286.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1276.2286.1
Unique Nameprot_Ecto-sp13_S_contig1276.2286.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length504
Homology
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE)

HSP 1 Score: 853 bits (2205), Expect = 3.720e-307
Identity = 467/505 (92.48%), Postives = 474/505 (93.86%), Query Frame = 0
Query:    1 MEMVPVPTSSAETNPGGGGQVFPEDDDPVRVRDDVGEEADETEEAMEEAEAEQARDVMLITILIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRPISGSAQKKGDKKTPPGDGKKPDDTEAAAAGEEGGVTGSDLHGASAGSTAAPKTAVVAAAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQVSVDVEAGEGGEAEATTPITAAAAPGQAFGGGGPARSGSTRSIRGAIVLPDQGGQPQEGSIVVQPASAPSYVVVPREYSLGGGGIDEEHPGDGGEGPSGSSTRELTSSSARASATERPPDEVARATDATEEKEEMVVEAPEERRGSQKGFSDGRGGVVFGGNTEEFREAEAEAAA--VAGARNGAAASGGAGPRL 503
            MEMVPVPTSS ETNPGGGGQVFPEDDDPVRV DDVGEEAD   EAMEEAEAEQARDVMLITI IVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLP+TRYKRP+SGSAQKKG KKTP  DGKKPD TEAAAAGEEGGVTGSDLHGA AG T AP+TAVV AAEGGE EGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVS+RLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQ SVDVEAGEG EAEATTPITA AAPGQAFGGGGPARSGSTRS RGAIVLPDQGGQPQEGSIVVQPASAPSYVVVPREYSLGGG ID EHPG+GGEGP GSS RELTSSSARASATERPPDEVARATDATEEKEE+V EAPEERRGSQKGFSDGRGGVVFGGNTEEFREAEA      +AGARNGAAA GGAGPRL
Sbjct:  198 MEMVPVPTSSTETNPGGGGQVFPEDDDPVRVSDDVGEEAD---EAMEEAEAEQARDVMLITISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSGSAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGAPQTAVVLAAEGGEREGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSNRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGVEAEATTPITADAAPGQAFGGGGPARSGSTRSTRGAIVLPDQGGQPQEGSIVVQPASAPSYVVVPREYSLGGG-IDNEHPGNGGEGPVGSSMRELTSSSARASATERPPDEVARATDATEEKEEIVAEAPEERRGSQKGFSDGRGGVVFGGNTEEFREAEAXXXXXXMAGARNGAAAIGGAGPRL 698          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI)

HSP 1 Score: 769 bits (1987), Expect = 4.480e-277
Identity = 428/502 (85.26%), Postives = 438/502 (87.25%), Query Frame = 0
Query:    3 MVPVPTSSAETNPGGGGQVFPEDDDPVRVRDDVGEEADETEEAMEEAEAEQARDVMLITILIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRPISGSAQKKGDKKTPPGDGKKPDDTEAAAAGEEGGVTGSDLHGASAGSTAAPKTAVVAAAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQVSVDVEAGEGGEAEATTPITAAAAPGQA-FGGGGPARSGSTRSIRGAIVLPDQGGQPQEGSIVVQPASAPSYVVVPREYSLGGGGIDEEHPGDGGEGPSGSSTRELTSSSARASATERPPDEVARATDATEEKEEMVVEAPEERRGSQKGFSDGRGGVVFGGNTEEFREAEAEAAAVAGARNGAAASGGAGPRL 503
            MVPVPTSSAETNPGGGGQVFPEDDDPVRV DDVGEEA           AEQARDVMLITI IVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRP+SG+AQKKGDKKTP  DGKKPDDTEAAAAGEEGGVTGSDLHG    STAAPKTAVVA AEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDR+YRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQ SVDVEAGEGGEAEA              F    PA SGSTRS RGAIVLPDQGGQPQ GSIVVQPASAPSYVVVPREYSLGG GIDEE+PG+GGEG +GSSTREL SS+ARAS TE  PD+VA+ATDATEEKEE+V EA EERRGS KGFSDGRGGVVFGGNTEEFREA A            AASGGAGPRL
Sbjct:    4 MVPVPTSSAETNPGGGGQVFPEDDDPVRVSDDVGEEAXXXXXXXXXXXAEQARDVMLITISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRPVSGTAQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAXXXXXXXXXXXXXXFXXXXPAGSGSTRSTRGAIVLPDQGGQPQ-GSIVVQPASAPSYVVVPREYSLGGDGIDEEYPGNGGEGLAGSSTRELASSAARASTTEGLPDDVAQATDATEEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREAAAXXXXXXXXXXXXAASGGAGPRL 504          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.570e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0
Query:  182 GEGEGARDSTED-MCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANV 240
            G+ EG R+   D MCAICL ++E GD+LR++P C H++HK C+DPWLETKA+C  CK  V
Sbjct:  237 GDVEGGREGVGDLMCAICLADFEGGDQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRV 296          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A8J5S5L1_ZIZPA (RING-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S5L1_ZIZPA)

HSP 1 Score: 81.3 bits (199), Expect = 5.510e-13
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0
Query:  195 CAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVE 241
            CA+CL+E+E GD+LR++P C H FH ECIDPWLET+  C  C+AN+E
Sbjct:  128 CAVCLMEFEDGDDLRLLPHCSHAFHPECIDPWLETRVTCPLCRANLE 174          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A0P0YC54_ORYSJ (Os12g0620100 protein n=4 Tax=Oryza TaxID=4527 RepID=A0A0P0YC54_ORYSJ)

HSP 1 Score: 76.3 bits (186), Expect = 8.850e-13
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 0
Query:  177 AAAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 243
            AA + G+G G        CA+CL EYE GDELR +PGCGH FH+ C+D WL  +  C  C+++  AR
Sbjct:   82 AAVDAGDGTG--------CAVCLAEYEDGDELRRLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 140          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A0E0MPQ0_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0MPQ0_ORYPU)

HSP 1 Score: 79.0 bits (193), Expect = 1.860e-12
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 0
Query:  167 STAAPKTAVVAAA-EGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 243
            S++AP+ A  AAA + G+G G        CA+CL EYE GDELR +PGCGH FH+ C+D WL  +  C  C+++  AR
Sbjct:   72 SSSAPEEAAAAAAIDVGDGTG--------CAVCLAEYEDGDELRPLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 141          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A3B6TN24_WHEAT (RING-type domain-containing protein n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6TN24_WHEAT)

HSP 1 Score: 77.8 bits (190), Expect = 2.040e-12
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0
Query:  189 DSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVE 241
            D  E+ C +CL  +E GD LR++P C H FH ECIDPWL+ +A C  C+AN+E
Sbjct:  119 DEEEERCPVCLAVFEEGDNLRLLPHCSHVFHPECIDPWLQARATCPLCRANLE 171          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A7S2EA99_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EA99_TRICV)

HSP 1 Score: 74.3 bits (181), Expect = 7.040e-12
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0
Query:  183 EGEGARDST----EDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCK 237
            EGEGA  S     ED C ICLV+YE GDE+R +P CGH FHK+C+D WLE    C  C+
Sbjct:    1 EGEGAESSPALEEEDCCPICLVDYEGGDEVRTLP-CGHEFHKDCVDAWLENHTSCPACR 58          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A0E0RK53_ORYRU (Uncharacterized protein n=7 Tax=Oryza TaxID=4527 RepID=A0A0E0RK53_ORYRU)

HSP 1 Score: 76.3 bits (186), Expect = 1.110e-11
Identity = 32/67 (47.76%), Postives = 42/67 (62.69%), Query Frame = 0
Query:  177 AAAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 243
            AA + G+G G        CA+CL EYE GDELR +PGCGH FH+ C+D WL  +  C  C+++  AR
Sbjct:   71 AAVDAGDGTG--------CAVCLAEYEDGDELRRLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 129          
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Match: A0A3B6MIZ0_WHEAT (RING-type domain-containing protein n=2 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6MIZ0_WHEAT)

HSP 1 Score: 73.2 bits (178), Expect = 1.180e-11
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0
Query:  192 EDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 243
            E  CA+CL EY  GDELR++PGC H FH+ C+D WL  +  C  C+A+ ++R
Sbjct:   91 ERGCAVCLAEYADGDELRVMPGCAHTFHRRCVDQWLRRRPSCPLCRASSQSR 142          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1276.2286.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYP0_9PHAE3.720e-30792.48RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LEX7_ECTSI4.480e-27785.26RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZK41_9STRA2.570e-1456.67RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A8J5S5L1_ZIZPA5.510e-1361.70RING-type domain-containing protein n=1 Tax=Zizani... [more]
A0A0P0YC54_ORYSJ8.850e-1347.76Os12g0620100 protein n=4 Tax=Oryza TaxID=4527 RepI... [more]
A0A0E0MPQ0_ORYPU1.860e-1247.44Uncharacterized protein n=1 Tax=Oryza punctata Tax... [more]
A0A3B6TN24_WHEAT2.040e-1252.83RING-type domain-containing protein n=1 Tax=Tritic... [more]
A0A7S2EA99_TRICV7.040e-1255.93Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A0E0RK53_ORYRU1.110e-1147.76Uncharacterized protein n=7 Tax=Oryza TaxID=4527 R... [more]
A0A3B6MIZ0_WHEAT1.180e-1150.00RING-type domain-containing protein n=2 Tax=Tritic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 32..52
NoneNo IPR availablePANTHERPTHR45798FAMILY NOT NAMEDcoord: 45..241
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 80..503
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..79
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 192..242
NoneNo IPR availableTMHMMTMhelixcoord: 57..79
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 195..236
e-value: 1.1E-5
score: 35.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 193..237
e-value: 2.5E-12
score: 46.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 195..237
score: 10.999
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 162..243
e-value: 5.5E-18
score: 66.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1276contigEcto-sp13_S_contig1276:406..3209 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1276.2286.1mRNA_Ecto-sp13_S_contig1276.2286.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1276 259..4138 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1276.2286.1 ID=prot_Ecto-sp13_S_contig1276.2286.1|Name=mRNA_Ecto-sp13_S_contig1276.2286.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=504bp
MEMVPVPTSSAETNPGGGGQVFPEDDDPVRVRDDVGEEADETEEAMEEAE
AEQARDVMLITILIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQ
EEGLTKRSIERLPQTRYKRPISGSAQKKGDKKTPPGDGKKPDDTEAAAAG
EEGGVTGSDLHGASAGSTAAPKTAVVAAAEGGEGEGARDSTEDMCAICLV
EYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRI
YRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMD
YVGSAVAPRQVSVDVEAGEGGEAEATTPITAAAAPGQAFGGGGPARSGST
RSIRGAIVLPDQGGQPQEGSIVVQPASAPSYVVVPREYSLGGGGIDEEHP
GDGGEGPSGSSTRELTSSSARASATERPPDEVARATDATEEKEEMVVEAP
EERRGSQKGFSDGRGGVVFGGNTEEFREAEAEAAAVAGARNGAAASGGAG
PRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD