prot_Ecto-sp13_S_contig12655.2198.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig12655.2198.1
Unique Name	prot_Ecto-sp13_S_contig12655.2198.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	102

Homology

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A6H5KWM4_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWM4_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.590e-64
Identity = 94/101 (93.07%), Postives = 100/101 (99.01%), Query Frame = 0

Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEPTVSN 101
            + +VNLPKDHVANTHRGFGFVEFE+EEDAKAAIDN+DGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPAD+LEPTVS+
Sbjct:   35 IVEVNLPKDHVANTHRGFGFVEFELEEDAKAAIDNMDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADSLEPTVSD 135

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A835Z2R3_9STRA (Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R3_9STRA)

HSP 1 Score: 128 bits (321), Expect = 4.940e-36
Identity = 58/101 (57.43%), Postives = 79/101 (78.22%), Query Frame = 0

Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEPTVSN 101
            L +V +P++  + T+RGFGFVE+E EEDA AA++N+DGAEL G+VLRVN AKP+KHKLGA  AVWSAD+W+KN + EGD+T  +  D++   DALEP  ++
Sbjct:   35 LVEVQIPREWKSGTNRGFGFVEYEAEEDASAAMENMDGAELAGRVLRVNRAKPLKHKLGAARAVWSADEWFKN-MAEGDETINMTADDMPQPDALEPVAAS 134

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: I2CRH6_NANGC (RRM domain-containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRH6_NANGC)

HSP 1 Score: 109 bits (273), Expect = 9.100e-29
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 0

Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELE 90
            + +VN+PKD   NT RGFGFV FE  EDA AAIDN++GAEL G+VL+ N A+PM+HKLGA+  VWS D+W+K+ L E  D     GD+LE
Sbjct:   38 IVEVNIPKDFKENTTRGFGFVHFESAEDAAAAIDNMEGAELLGRVLKCNVARPMQHKLGANKPVWSTDEWFKSQLAEDKDL----GDQLE 123

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A7S2V6A5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6A5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.520e-28
Identity = 48/97 (49.48%), Postives = 74/97 (76.29%), Query Frame = 0

Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEP 97
            + +VN+P+D   + +RGFGFV+FE E+DA AAI+N+DGAEL+G+VLR N A+P+KH+LGA   VWSA+DW+++ + +G+       + ++PAD+L P
Sbjct:   40 IVEVNIPRDFQKDLNRGFGFVDFEDEKDASAAIENMDGAELFGRVLRCNLARPIKHRLGASKPVWSAEDWFQSNVKDGE----ADEENIDPADSLIP 132

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A7S2H1G4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H1G4_9STRA)

HSP 1 Score: 105 bits (263), Expect = 4.070e-27
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 0

Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGD--ELEPADA 94
            + +V +PKD   N +RGFGFVEF+ + DA  A+DN+DG+EL G+VLRVN AKP+ HKLGA  AVWS+D+W+K  L E  D A    D   L P DA
Sbjct:   35 VVEVQIPKDFKDNKNRGFGFVEFDNDADAAEAMDNMDGSELLGRVLRVNIAKPITHKLGASKAVWSSDEWFKQNLKEDQDLADAQDDTDSLVPMDA 130

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A7S2C0W9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C0W9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.360e-26
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 0

Query:    3 KVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEP 97
            +V +PKD   NT+RGFGF+E+  +EDA  A+DN+DGAEL G+VLRVN AKPMK KLGA   VWS ++W +N+L E     +   D  E AD L P
Sbjct:   44 EVQIPKDFKENTNRGFGFIEYTNDEDAAEAMDNMDGAELLGRVLRVNVAKPMKAKLGASKPVWSTEEWLQNSLKED----QALADAQEDADDLTP 134

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A7S2MDS5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MDS5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.640e-25
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 0

Query:    6 LPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGD--ELEPADA 94
            +PK    N +RGFGFVEF+ + DA  A+DN+DG+EL G+VLRVN AKP+ HKLGA  AVWS+D+W+K  L E  D A    D   L P DA
Sbjct:    2 IPKYFKDNKNRGFGFVEFDNDADAAEAMDNMDGSELLGRVLRVNIAKPITHKLGASKAVWSSDEWFKQNLKEDQDLADAQDDTDSLVPMDA 92

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A812XSP9_SYMMI (PPIE protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812XSP9_SYMMI)

HSP 1 Score: 94.4 bits (233), Expect = 5.590e-23
Identity = 45/79 (56.96%), Postives = 58/79 (73.42%), Query Frame = 0

Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGD 79
            + +VN+PKD   N HRGFGFV+FE  EDA AAI+N++GAEL+GKVL+ N AKPM  KL    AVW+A++W  N+L   D
Sbjct:   25 IREVNIPKDFAENKHRGFGFVDFEDAEDAAAAIENMNGAELFGKVLKCNMAKPMT-KLQPGQAVWTAEEWLSNSLKTDD 102

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A8C1E119_CYPCA (RRM domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1E119_CYPCA)

HSP 1 Score: 89.4 bits (220), Expect = 9.480e-21
Identity = 43/101 (42.57%), Postives = 60/101 (59.41%), Query Frame = 0

Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEPTVSN 101
            +  + +P D+    HRGF F+EFE+ EDA AAIDN++ +EL+G+ +RVN AKPM+ K G+   VWS DDW K        + K   +  E   A EP  +N
Sbjct:   32 ITDIQIPLDYETEKHRGFAFIEFELAEDAAAAIDNMNESELFGRTIRVNIAKPMRIKEGSSRPVWSEDDWLKKF------SGKTVEESEEAESAAEPASTN 126

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BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Match: A0A6J3PTX7_TURTR (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tursiops truncatus TaxID=9739 RepID=A0A6J3PTX7_TURTR)

HSP 1 Score: 92.0 bits (227), Expect = 1.270e-20
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 0

Query:    1 LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNAAKPMKHKLGAHTAVWSADDWYK---------NTLVEGDDTAKLAGDELEPA 92
            +  + +P D+    HRGF FVEFE+ EDA AAIDN++ +EL+G+ +RVN AKPM+ K G+   VWS DDW K         N   EG +  K+   E EPA
Sbjct:   32 ITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKEGSSRPVWSDDDWLKKFSGKTLEENKEEEGSEPPKVEAQEGEPA 132

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig12655.2198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KWM4_9PHAE	1.590e-64	93.07	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A835Z2R3_9STRA	4.940e-36	57.43	Peptidyl-prolyl cis-trans isomerase E n=1 Tax=Trib...	[more]
I2CRH6_NANGC	9.100e-29	57.78	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A7S2V6A5_9STRA	2.520e-28	49.48	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2H1G4_9STRA	4.070e-27	54.17	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A7S2C0W9_9STRA	5.360e-26	53.68	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S2MDS5_9STRA	2.640e-25	54.95	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A812XSP9_SYMMI	5.590e-23	56.96	PPIE protein (Fragment) n=1 Tax=Symbiodinium micro...	[more]
A0A8C1E119_CYPCA	9.480e-21	42.57	RRM domain-containing protein n=1 Tax=Cyprinus car...	[more]
A0A6J3PTX7_TURTR	1.270e-20	45.54	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tursio...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..61 e-value: 1.9E-14 score: 55.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 3..47 e-value: 3.6E-11 score: 42.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 1..53 score: 13.055
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 3..64
None	No IPR available	PANTHER	PTHR23003:SF35	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 3..64
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..56

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig12655	contig	Ecto-sp13_S_contig12655:1855..4957 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig12655.2198.1	mRNA_Ecto-sp13_S_contig12655.2198.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig12655 791..4957 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig12655.2198.1 ID=prot_Ecto-sp13_S_contig12655.2198.1|Name=mRNA_Ecto-sp13_S_contig12655.2198.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
LAKVNLPKDHVANTHRGFGFVEFEVEEDAKAAIDNLDGAELYGKVLRVNA
AKPMKHKLGAHTAVWSADDWYKNTLVEGDDTAKLAGDELEPADALEPTVS
N*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf