prot_Ecto-sp13_S_contig1262.2166.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1262.2166.1
Unique Name	prot_Ecto-sp13_S_contig1262.2166.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	317

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: D7FKE7_ECTSI (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE7_ECTSI)

HSP 1 Score: 459 bits (1182), Expect = 1.350e-160
Identity = 280/319 (87.77%), Postives = 285/319 (89.34%), Query Frame = 0

Query:    1 GDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAYHDATAGXXXXXXXNAFRDGGAXXGGYGQTPAAAQPSPFARGPIDASFSAAGXXXXXXXXXXXXXXXXXXQTAQPQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDEDXXXXXIPTRSLADDPDDVRDGGVLF--RGGEGLRSRRXXXXXXXXXXXXXXXXXIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHSGGNLT 317
            GDVGYGTQQQGYQTRSR RGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTG PPRGA+HDATAG XXXXXXNAFR+GG XXGG GQTPAAAQPSPFARGP++ SFSAAG  XXXXXXXXXXX     QTAQ QQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMD  XXXXXIPTRSLADDPDDVRDGGVLF            XXXXXXXX    XXXX IG FNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVH+GGNLT
Sbjct:    7 GDVGYGTQQQGYQTRSRERGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGAPPRGAFHDATAGGXXXXXXNAFRNGGXXXGGCGQTPAAAQPSPFARGPMNDSFSAAGGGXXXXXXXXXXXYSNPGQTAQQQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDX-XXXXXIPTRSLADDPDDVRDGGVLFGXXXXXXXXXXXXXXXXXXXVDRMXXXXGIGSFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEVHAGGNLT 324

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: A0A6H5KSX2_9PHAE (RRM Nup35-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSX2_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 3.390e-126
Identity = 251/310 (80.97%), Postives = 257/310 (82.90%), Query Frame = 0

Query:    1 GDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPTGVPPRGAYHDATAGXXXXXXX-NAFRDGGAXXGGYGQTPAAAQPSPFARGPIDASFSAAGXXXXXXXXXXXXXXXXXXQTAQPQQQQHGFGARVGFSSEVALVPVEASGNSRGRNVMDEDXXXXXIPTRSLADDPDDVRDGGVLFRGGEGLRSRRXXXXXXXXXXXXXXXXXIGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDE 309
            GDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQ+FRSTDPPTGVPPRGAY DATAG XXXXXX NAFR    XX    QTPA+AQPSPFARGP++AS S A XXXXXXXXXXXX      QTAQ QQQQHGFGARVGFSS+VA VPVEASGNSRG+NVMD  XXXXX  TRSL                        XXXXXXXXXXXXXXXXX GGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLY KYATRLQAEKALAAGHGSRLTDTVMLGVQRV DDE
Sbjct:    7 GDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQNFRSTDPPTGVPPRGAYIDATAGGXXXXXXXNAFRSXXXXXXXXXQTPASAQPSPFARGPMNASSSVAXXXXXXXXXXXXXGYSDPGQTAQ-QQQQHGFGARVGFSSDVAFVPVEASGNSRGQNVMDXXXXXXXXXTRSLXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXFGGFNAAPDTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYLKYATRLQAEKALAAGHGSRLTDTVMLGVQRVLDDE 311

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: E9HKL2_DAPPU (Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID=6668 RepID=E9HKL2_DAPPU)

HSP 1 Score: 66.6 bits (161), Expect = 1.330e-9
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 0

Query:  230 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 310
            D+   TWV V+G PP  ++ VL +   +G ++E R     NW++ K+A+RLQA KALA  +G  LTDT+++GV    D  +
Sbjct:    4 DSDAGTWVTVFGFPPTAASYVLTQTAMWGHILEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLIIGVVPCTDGSI 83

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: A0A0P5DW53_9CRUS (Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5DW53_9CRUS)

HSP 1 Score: 67.4 bits (163), Expect = 4.090e-9
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 0

Query:  230 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRVPDDEV 310
            D+   TWV V+G PP  ++ VL +   +G ++E R     NW++ K+A+RLQA KALA  +G  LTDT+M+GV    D  +
Sbjct:  136 DSDAGTWVTVFGFPPSAASYVLTQTGMWGHIMEHRIPSQGNWMHLKFASRLQARKALAR-NGRLLTDTLMIGVVPCTDGAI 215

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: A0A1V9Z8L5_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z8L5_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.480e-6
Identity = 37/86 (43.02%), Postives = 46/86 (53.49%), Query Frame = 0

Query:  236 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQRV------PDDEVHSGGN 315
            W+ V+G        +L  F   GD V+ R   G NWLY +Y TRLQAEKALA   GS L+ +VM+GV+R        D  V  G N
Sbjct:  128 WITVFGFSAVDMETILRHFQSMGDAVQYRYGRG-NWLYVRYRTRLQAEKALAES-GSTLSGSVMIGVKRCLVSEMDADTPVQQGSN 211

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: A0A7R9UFC1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFC1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.950e-6
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 0

Query:  230 DTQRATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGV 302
            D +   WVVV+G  P +S  VL  F +FGD+VE     G NWL+ +Y +R+QA+KA+A  +G+ L  T+M+ V
Sbjct:  180 DIRWQDWVVVFGFQPEQSTSVLRYFQRFGDIVEHHRGKG-NWLFIRYRSRMQAQKAVAQ-NGATLDPTLMVAV 250

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: B7PS80_IXOSC (Nucleoporin NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=B7PS80_IXOSC)

HSP 1 Score: 58.2 bits (139), Expect = 2.140e-6
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0

Query:  235 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 303
            TWV V+G PP  ++ ++ +F  +G+++E R  P SNW++  Y ++LQA+KAL+  +G       M+GV+
Sbjct:   75 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 142

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: UPI001C383A88 (nucleoporin NUP35 isoform X1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001C383A88)

HSP 1 Score: 58.2 bits (139), Expect = 4.420e-6
Identity = 26/69 (37.68%), Postives = 45/69 (65.22%), Query Frame = 0

Query:  235 TWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQ 303
            TWV V+G PP  ++ ++ +F  +G+++E R  P SNW++  Y ++LQA+KAL+  +G       M+GV+
Sbjct:  147 TWVTVFGFPPSATSYIVQQFSHYGNILEHRVVPESNWVHLHYQSKLQAKKALSK-NGKVFGTNTMVGVK 214

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: A0A836CNV8_9STRA (RRM Nup35-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNV8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.230e-6
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 0

Query:  234 ATWVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTD-TVMLGVQRV 305
            A WV+V+G+P G   +V+  F  +G VVE R   G NW+  +YAT LQA KALA+G+ +R++   +M+G   +
Sbjct:   86 ARWVMVYGMPAGCVAEVVDHFRVYGQVVENRVGQG-NWVLLRYATVLQARKALASGNHARISGGRIMVGTSAI 157

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BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Match: A0A3L6VS50_9STRA (RRM Nup35-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VS50_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-5
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 0

Query:  236 WVVVWGVPPGKSNQVLIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVMLGVQR 304
            W+ V+G P    + VL  F   GDV + R   G NWLY +Y TRLQAE+AL    GS L   VM+GV+R
Sbjct:  127 WITVFGFPLQDMDVVLSYFQTVGDVAQYRHGRG-NWLYLRYQTRLQAERALFES-GSTLGGRVMIGVKR 193

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1262.2166.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
D7FKE7_ECTSI	1.350e-160	87.77	RRM Nup35-type domain-containing protein n=1 Tax=E...	[more]
A0A6H5KSX2_9PHAE	3.390e-126	80.97	RRM Nup35-type domain-containing protein n=1 Tax=E...	[more]
E9HKL2_DAPPU	1.330e-9	40.74	Nucleoporin NUP35 (Fragment) n=3 Tax=Daphnia TaxID...	[more]
A0A0P5DW53_9CRUS	4.090e-9	41.98	Nucleoporin NUP53 n=2 Tax=Daphnia magna TaxID=3552...	[more]
A0A1V9Z8L5_9STRA	1.480e-6	43.02	RRM Nup35-type domain-containing protein n=1 Tax=A...	[more]
A0A7R9UFC1_9STRA	1.950e-6	43.84	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
B7PS80_IXOSC	2.140e-6	37.68	Nucleoporin NUP35 n=3 Tax=Ixodes TaxID=6944 RepID=...	[more]
UPI001C383A88	4.420e-6	37.68	nucleoporin NUP35 isoform X1 n=1 Tax=Ixodes scapul...	[more]
A0A836CNV8_9STRA	5.230e-6	42.47	RRM Nup35-type domain-containing protein n=1 Tax=T...	[more]
A0A3L6VS50_9STRA	1.010e-5	47.83	RRM Nup35-type domain-containing protein (Fragment...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 230..304 e-value: 5.0E-16 score: 60.5
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 232..307 e-value: 2.6E-11 score: 43.4
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 231..312 score: 18.759
None	No IPR available	PANTHER	PTHR21527:SF6	NUCLEOPORIN NUP35	coord: 226..311
None	No IPR available	PANTHER	PTHR21527	FAMILY NOT NAMED	coord: 226..311
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 234..309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1262	contig	Ecto-sp13_S_contig1262:4376..7052 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1262.2166.1	mRNA_Ecto-sp13_S_contig1262.2166.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1262 4376..7052 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1262.2166.1 ID=prot_Ecto-sp13_S_contig1262.2166.1|Name=mRNA_Ecto-sp13_S_contig1262.2166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
GDVGYGTQQQGYQTRSRGRGRDGPPEGQVVEGDLFGNPKRQSFRSTDPPT
GVPPRGAYHDATAGGGGGGGGNAFRDGGAGAGGYGQTPAAAQPSPFARGP
IDASFSAAGGGSAPGPGYGAGGYSNPGQTAQPQQQQHGFGARVGFSSEVA
LVPVEASGNSRGRNVMDEDDDDDDIPTRSLADDPDDVRDGGVLFRGGEGL
RSRRGGGGGGGGDDRMGGGGGIGGFNAAPDTQRATWVVVWGVPPGKSNQV
LIRFLQFGDVVEQRGQPGSNWLYFKYATRLQAEKALAAGHGSRLTDTVML
GVQRVPDDEVHSGGNLT

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR007846	RRM_NUP35_dom
IPR035979	RBD_domain_sf