prot_Ecto-sp13_S_contig1233.1951.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1233.1951.1
Unique Nameprot_Ecto-sp13_S_contig1233.1951.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length237
Homology
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: D7FWB7_ECTSI (RABLI1, a divergent Ectocarpus-specific RAB-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB7_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 1.380e-130
Identity = 184/196 (93.88%), Postives = 185/196 (94.39%), Query Frame = 0
Query:   41 AAWTVAGRPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDVPASAKTSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQSLVTEACSGSKARPPHFIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFCTSFAGEGIMGILREVVVTCFERHPPPAVLKDLYLAV 236
            AAWTVAGRPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWD+PASAKTSLGPEIAAETSCALLLLDLDDRNSFRV KRWQSLVTEACSGSKARPPHFIVVGTKID    S      GVRGWCEEQGYPLLFCTSFAGEGIMGILREVVVTCFERHPPPAVLKDLYLAV
Sbjct:   12 AAWTVAGRPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDIPASAKTSLGPEIAAETSCALLLLDLDDRNSFRVAKRWQSLVTEACSGSKARPPHFIVVGTKIDRGGCSTWMRCAGVRGWCEEQGYPLLFCTSFAGEGIMGILREVVVTCFERHPPPAVLKDLYLAV 207          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: A0A5C3KGP2_9AGAR (Rab small monomeric GTPase n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3KGP2_9AGAR)

HSP 1 Score: 80.1 bits (196), Expect = 9.340e-15
Identity = 44/155 (28.39%), Postives = 72/155 (46.45%), Query Frame = 0
Query:   49 PPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDVPASAK-TSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQSLVTEACSGSKARPPHFIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFCTS 202
            P SAL K+++LGD+GVGKT+L      K F  +Y          +    ++ P   +++WD     +  SLG        C +L+ D++   SF+ ++ W+       S  +     F+V+G K+DV  + R    K    WC+ +G    F TS
Sbjct:    3 PRSALLKVIILGDSGVGKTSLMNQYVNKRFSTQYKATIGADFLTKEVETEERP-VTMQLWDTAGQERFQSLGVAFYRGADCCVLVFDVNSSKSFQALESWRDEFLIQSSPHEPEEFPFVVLGNKVDVDESKRQVTQKRALAWCQAKGNLPYFETS 156          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: A0A4Q2DF98_9AGAR (Uncharacterized protein n=3 Tax=Psathyrellaceae TaxID=184208 RepID=A0A4Q2DF98_9AGAR)

HSP 1 Score: 75.5 bits (184), Expect = 4.880e-13
Identity = 43/153 (28.10%), Postives = 70/153 (45.75%), Query Frame = 0
Query:   51 SALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDVPASAK-TSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQSLVTEACSGSKARPPHFIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFCTS 202
            +AL K+++LGD+GVGKT+L      K F  +Y          ++   D      +++WD     +  SLG        C +L+ D++   SF+ ++ W+       S S      F+V+G K+DV  + R    K    WC+ +G    F TS
Sbjct:    4 TALLKVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKAVDVDNQQ-VTIQLWDTAGQERFQSLGVAFYRGADCCVLVFDVNSLKSFQALESWRDEFLIQASPSDPENFPFVVLGNKVDVDDSKRQVTQKRAMAWCQAKGNLPYFETS 155          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: A0A0A1U390_ENTIV (Uncharacterized protein n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1U390_ENTIV)

HSP 1 Score: 73.6 bits (179), Expect = 2.560e-12
Identity = 50/196 (25.51%), Postives = 81/196 (41.33%), Query Frame = 0
Query:   48 RPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDVPASAK-TSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQSLVTEACSGSKARPPH---FIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFCTSFAGEGIMGILREVVVTCFERH-------PPPAVLKDL 232
            R    L+KI++LGD+GVGKT+L      K F  +Y          +  + ++   + L+IWD     +  S G          +L+ D+    SF  ++ W+    E  SG     P    ++V+  K+D  PA+R    + +R WC   GY    C++  G  +     +       R        P P+V  DL
Sbjct:    5 RKKKNLYKIIILGDSGVGKTSLLNQYVTKQFSSQYKATIGADFMTKDITINEKQSS-LQIWDTAGHERFASFGTAFYRGADVCMLVCDVTVVESFEHLEVWRK---EFISGGNPSDPETFPYVVIANKVDCEPANRAVSTEQLRQWCVTSGYEYFECSAKTGWNVDSAFTKAATLVASRQKDVPQQEPLPSVQIDL 196          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: Q1WMV2_COPDI (Putative GTPase n=3 Tax=Coprinellus TaxID=184430 RepID=Q1WMV2_COPDI)

HSP 1 Score: 72.4 bits (176), Expect = 3.950e-12
Identity = 47/155 (30.32%), Postives = 71/155 (45.81%), Query Frame = 0
Query:   51 SALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDVPASAK-TSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQS--LVTEACSGSKARPPHFIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFCTS 202
            SAL K+++LGD+GVGKT+L      K F  +Y          +S   D      +++WD     +  SLG        C +L+ D++   SF+ ++ W+   L+  +  G     P F+VVG K+DVT        K    WC  +G    F TS
Sbjct:    5 SALLKVIILGDSGVGKTSLMNQYVNKRFSNQYKATIGADFLTKSVEVDDQQ-VTIQLWDTAGQERFQSLGVAFYRGADCCVLVFDVNSSKSFQALEGWRDEFLIQASPQGDPEEFP-FVVVGNKVDVTQ-------KRAMAWCAAKGNLPYFETS 150          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: F4Q636_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q636_CAVFA)

HSP 1 Score: 73.2 bits (178), Expect = 4.790e-12
Identity = 49/179 (27.37%), Postives = 82/179 (45.81%), Query Frame = 0
Query:   53 LFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSF----SRDKFPPAVLEIWDVPASAK-TSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQS-LVTEACSGSKARPP---HFIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFCTSFAGEGIM-----GILREVVV 217
            LFKI+++G +GVGKT+L      K ++ ++     V    +      S+ +     L+IWD     +  SLG        C +L  D++D+ SF  + RW++  + +A   S +  P     +V+G KID+    RC   K  + WC E      F TS     ++      I R++V+
Sbjct:   16 LFKIILIGSSGVGKTSLLSQYVHKRYIQQHKATIGVDFLTKDLQLKDSKGETCSVTLQIWDTAGQERFQSLGSAFYRGADCCVLTYDVNDQTSFENLDRWKNDFIHQAAPSSPSSSPIPYQLVVIGNKIDMEN-QRCVSQKRAQAWCTENSVISYFETSAKDHQLVEQTFESIARQIVL 193          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: A0A662GQX0_9CREN (GTP-binding protein n=1 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662GQX0_9CREN)

HSP 1 Score: 72.0 bits (175), Expect = 5.950e-12
Identity = 45/126 (35.71%), Postives = 61/126 (48.41%), Query Frame = 0
Query:   50 PSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDVPASAKTS-LGPEIAAETSCALLLLDLDDRNSFRVVKRWQSLVTEACSGSKARPPHFIVVGTKIDV 174
            P   FK++V+GD GVGKT+L R    K F  EY P   + +  R  S      A+L+IWD     K   + P      + ALL+ DL  R +F  V  W  L+     GS    P  I+VG K+D+
Sbjct:    5 PMVTFKVVVIGDYGVGKTSLCRRFAKKTFTFEYKPTIGIDILVRQISLPYIGKAILQIWDTAGEEKFKRMIPMYFKGANYALLVFDLTRRRTFDSVMEWYELL----KGSIGEVP-LILVGNKLDL 125          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: A0A835PM46_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PM46_VANPL)

HSP 1 Score: 72.4 bits (176), Expect = 1.280e-11
Identity = 48/179 (26.82%), Postives = 78/179 (43.58%), Query Frame = 0
Query:   49 PPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDVPASAK-TSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQSLVTEACSGSKARPPHFIVVGTKIDVTPASRCCFLKGVRGWCEEQG-YPLLFCTSFAGEGIMGILREVVVT-CFERHP 224
            PP A  K+++LGD GVGKT+L +    K F  EY          +  + ++     ++IWD        SL      +    +L+ D++ R +F  + +W S   E           F+++G KID          +  R WC  +G YP +  ++  G G+ G+  E +V   F  HP
Sbjct:   13 PPRAQIKVVLLGDQGVGKTSLVKRYVEKSFRSEYKATLCADFVTKEVAHEETTLVTVQIWDTAGEESFNSLETGYHRDVDGCVLVFDINKRKTFANIDKWYSQFLEQVETWDRPKLPFLLIGNKIDKDLGVSD---QWARDWCATKGGYPYIETSANDGRGV-GLAFECLVNLAFGYHP 187          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: Q6AW65_ENTHI (EhRab7D protein n=7 Tax=Entamoeba TaxID=5758 RepID=Q6AW65_ENTHI)

HSP 1 Score: 69.7 bits (169), Expect = 6.440e-11
Identity = 46/187 (24.60%), Postives = 80/187 (42.78%), Query Frame = 0
Query:   45 VAGRPPSALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTA-------VSVSARSFSRDKFPPAVLEIWDVPASAKTS-LGPEIAAETSCALLLLDLDDRNSFRVVKRWQSLVTEACSGSKARPPHFIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFCTSFAGEGIMGILREVVVTCFERH 223
            +AGRP  ALFK +++GD+GVGKT+L        F   Y            V+V+   ++        L+IWD     + S +       + C +L  D+ +R+SF  +++W++   +  + +        VVG KID  P  R    +  R WC+  G+     ++   E +  +   +      R 
Sbjct:    1 MAGRP--ALFKAILIGDSGVGKTSLINRYVNNQFSDVYKATIGSDFLIKPVTVNGAQYT--------LQIWDTAGHERYSCVVTTFYRGSDCCVLCFDVTNRDSFNHLEKWKNEFIDGANATNPASIPIYVVGNKIDCEPNKREVSQEQAREWCKLNGHKYFETSAMNAENVTDLFTTLAEDVVSRR 177          
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Match: Q6AW67_ENTHI (EhRab7B protein n=7 Tax=Entamoeba TaxID=5758 RepID=Q6AW67_ENTHI)

HSP 1 Score: 69.7 bits (169), Expect = 6.770e-11
Identity = 50/191 (26.18%), Postives = 77/191 (40.31%), Query Frame = 0
Query:   53 LFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKFPPAVLEIWDVPASAK-TSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQSLVTEACSGSKARPPH---FIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFCTSFAGEGIMGILREVVVTCFERH-------PPPAVLKDL 232
            LFKI++LGD+GVGKT+L      K F  +Y          +  + +    + L+IWD     +  S G          +L+ D+    SF  ++ W+    E  SG     P    ++V+  K D  PA+R      +R WC   GY    C++  G  +     +       R        P P+V  DL
Sbjct:   10 LFKIIILGDSGVGKTSLLNQYVTKQFSSQYKATIGADFMTKDITINDQQIS-LQIWDTAGHERFASFGTAFYRGADVCMLVCDVTVAESFEHLEVWRK---EFISGGNPSDPESFPYVVIANKNDCEPANRAVSSDQLRQWCVTNGYEFFECSAKTGWNVDSAFTKAATLVAMRQKEVPQPEPLPSVQIDL 196          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1233.1951.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWB7_ECTSI1.380e-13093.88RABLI1, a divergent Ectocarpus-specific RAB-like G... [more]
A0A5C3KGP2_9AGAR9.340e-1528.39Rab small monomeric GTPase n=1 Tax=Coprinopsis mar... [more]
A0A4Q2DF98_9AGAR4.880e-1328.10Uncharacterized protein n=3 Tax=Psathyrellaceae Ta... [more]
A0A0A1U390_ENTIV2.560e-1225.51Uncharacterized protein n=1 Tax=Entamoeba invadens... [more]
Q1WMV2_COPDI3.950e-1230.32Putative GTPase n=3 Tax=Coprinellus TaxID=184430 R... [more]
F4Q636_CAVFA4.790e-1227.37Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A662GQX0_9CREN5.950e-1235.71GTP-binding protein n=1 Tax=Thermoprotei archaeon ... [more]
A0A835PM46_VANPL1.280e-1126.82Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
Q6AW65_ENTHI6.440e-1124.60EhRab7D protein n=7 Tax=Entamoeba TaxID=5758 RepID... [more]
Q6AW67_ENTHI6.770e-1126.18EhRab7B protein n=7 Tax=Entamoeba TaxID=5758 RepID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 161..174
score: 30.9
coord: 54..75
score: 40.8
coord: 77..93
score: 20.48
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 54..218
e-value: 4.5E-5
score: -46.4
NoneNo IPR availableGENE3D3.40.50.300coord: 46..224
e-value: 7.6E-27
score: 95.7
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 52..218
NoneNo IPR availablePANTHERPTHR24073:SF269DNAJ HOMOLOG SUBFAMILY C MEMBER 27coord: 52..218
NoneNo IPR availablePROSITEPS51419RABcoord: 48..236
score: 8.985
IPR001806Small GTPasePFAMPF00071Rascoord: 55..215
e-value: 5.6E-14
score: 52.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 54..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1233contigEcto-sp13_S_contig1233:15296..18019 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1233.1951.1mRNA_Ecto-sp13_S_contig1233.1951.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1233 15296..18019 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1233.1951.1 ID=prot_Ecto-sp13_S_contig1233.1951.1|Name=mRNA_Ecto-sp13_S_contig1233.1951.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
SGVCGRIKAAVLFPCMLAKHVAFLRERRWADELRYPWQTRAAWTVAGRPP
SALFKILVLGDNGVGKTALARALCGKGFLPEYSPDTAVSVSARSFSRDKF
PPAVLEIWDVPASAKTSLGPEIAAETSCALLLLDLDDRNSFRVVKRWQSL
VTEACSGSKARPPHFIVVGTKIDVTPASRCCFLKGVRGWCEEQGYPLLFC
TSFAGEGIMGILREVVVTCFERHPPPAVLKDLYLAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase