prot_Ecto-sp13_S_contig11998.1704.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11998.1704.1
Unique Nameprot_Ecto-sp13_S_contig11998.1704.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length522
Homology
BLAST of mRNA_Ecto-sp13_S_contig11998.1704.1 vs. uniprot
Match: D7G861_ECTSI (ADP-ribosylation factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI)

HSP 1 Score: 748 bits (1931), Expect = 6.410e-260
Identity = 459/521 (88.10%), Postives = 468/521 (89.83%), Query Frame = 0
Query:    1 MEERRVAVDRVRLRVPERTSPPSAXXXXXXXXXXXXXXXXXXXXXXXXXRVEGRXXXXXXXXGKEEQFSPAAXXXXXXXXXXXXXXXXXXXXXENAAVQGSGRNGWEAAASAPGAWVAADTAQDRHEDFRAPGELRDDFFAENDGSGGSSGDEEEAVSALAGYGRQDPGAAXXXXXXXXXXXXXXXXAPRRMEGFGGGGSGWRGXXXXXXXXXGSVGKAAQQPVQSRGHTVVFPAGGMGLTLTKEMSGGCSVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISITFVMPTTGGGSGNGGRFSGVGGGPPVVQHTWADVGLAATIGAMDAANAVAVEWGLGASTPGVLAGAQSSGAGDILPAPQGFRVHQKHSLMAIPTGVAGGFGNSLAKHRTFAVDVSPDMATMSTKKALSDAPGEAVGEFDVGFGEGELGMRLEERGSFKASSVVVKITEGAGQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHAKRPVVVRFRLPDASGKR 521
            MEERRVAVDR+RLRVPERTSPP  XXXXXXXXXXXX             RVEGR      XX  EE+ SPA XXXXXXXXXXXXXXXXXXXXX         RNGWEAAASAPGAW AADTAQDRHEDFRAPGELRDDFFA+NDGSG SS  +EEAVSALAGYGRQDPGAAXXXXXXXXXXXXXXXXAPRRMEGFGGGG GWRG         GSVGKAAQQPV+SRGHTVVFPAGGMGLTLTKEMSGGCSVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISITFVMP+TGGGSGNGGRFSGVGGGPPVVQHTWADVGLAATIGAMDAANAVAVEWGLGA+TPGVLAGA SSGAGDI PAPQGFRVHQKHSLMAIPTGVAGGFGNSLAKHRTFAVDVSPDMATMSTKKALSDAPGE VGEFDV FGEGELGMRLEERGSFKASSVVVKITEG GQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHA+RPVVVRFRLPDASG+R
Sbjct:  547 MEERRVAVDRMRLRVPERTSPPPXXXXXXXXXXXXXSTHVTAATGTSGERVEGRRRSRKAXXXXEEKISPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGWEAAASAPGAWAAADTAQDRHEDFRAPGELRDDFFADNDGSGSSSRGDEEAVSALAGYGRQDPGAAXXXXXXXXXXXXXXXXAPRRMEGFGGGGRGWRGEGEVASGGGGSVGKAAQQPVKSRGHTVVFPAGGMGLTLTKEMSGGCSVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISITFVMPSTGGGSGNGGRFSGVGGGPPVVQHTWADVGLAATIGAMDAANAVAVEWGLGANTPGVLAGAHSSGAGDIPPAPQGFRVHQKHSLMAIPTGVAGGFGNSLAKHRTFAVDVSPDMATMSTKKALSDAPGEEVGEFDVRFGEGELGMRLEERGSFKASSVVVKITEG-GQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHARRPVVVRFRLPDASGRR 1066          
BLAST of mRNA_Ecto-sp13_S_contig11998.1704.1 vs. uniprot
Match: W7TXK3_9STRA (Adp-ribosylation factor gtpase-activating (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXK3_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.390e-31
Identity = 112/311 (36.01%), Postives = 156/311 (50.16%), Query Frame = 0
Query:  219 AAQQPVQSRGHTVVFPAGGMGLTLTKEMSGGCSVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISITFVMPTTGGGSGNGGRFSGVGGGPPVVQHTWADVGLAATIGAMDAANAVAVEW-GLGASTPGVLAGAQSSGAGDILPAPQGFRVHQKHSLM-----AIPTGVAGGFGNSLAKHRTFAVDVSPDMATMSTKKALSDAPGEAVGEFDVGFGEGELGMRLEE------RGSFKASSVVVKITEGAGQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHAKRPVVVRFRLPDA 517
            A +   Q+R ++VVF  G MGLTL+K   G   VT V P G A   GV +G  + +++ Q    Y+  MA +   PRP+ + F             R  G+G                +T GA+    A    W G GAS  G    A + G G  L      +V  +H+ +     A+P+ +A    +S     ++ +      + ++TK  L++ P    GEFD  F EG LGMRLEE       G  K    V+++T G G A S GVR+GC VVG+NGE+++SHAHTVATLKH KRPV+VRFRLP +
Sbjct:  165 APEHSGQAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRR-----------RMEGMG----------------STEGAVGGPRAPGPRWLGSGASLSGSGGKAFAGGFGKSL------QVLTRHASLGPGAAAVPS-LASASSSSFTSGGSYPLGGG---SGLTTKVPLTEDPD--AGEFDACFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSG-GAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLPTS 435          
BLAST of mRNA_Ecto-sp13_S_contig11998.1704.1 vs. uniprot
Match: A0A4D9D4X6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4X6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.680e-29
Identity = 111/303 (36.63%), Postives = 142/303 (46.86%), Query Frame = 0
Query:  225 QSRGHTVVFPAGGMGLTLTKEMSGGCSVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISITFVMPTTGGGSGNGGRFSGVG------GGPPVVQHTWADVGLAATIGAMDAANAVAVEWGLGASTPGVLAGAQSSGAGDILPAPQGFRVHQKHSLMAIPTGVAGGFGNSLAKHRTFAVDVSPDMATMSTKKALSDAPGEAVGEFDVGFGEGELGMRLEE------RGSFKASSVVVKITEGAGQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHAKRPVVVRFRLP 515
            Q+R ++VVF  G MGLTL+K   G   VT V P G A   GV +G  + +++ Q    Y+  MA +   PRP+ + F             R  G+G      GGP      W   G +++      +   A   G G S   VL    S G G    AP                 + GG G                   ++TK  L+  PG   GEFD  F EG LGMRLEE       G  K    V+++T G G A S GVR+GC VVG+NGE+++SHAHTVATLKH KRPV+VRFRLP
Sbjct:  747 QAREYSVVFGEGPMGLTLSKVEGGRALVTSVAPAGQAVLGGVRVGDALVSLDHQAMALYDLVMARLPSLPRPLVVGFRR-----------RMEGMGSTERAVGGPRAPGPRWLGSGASSS-----GSGGKAFAGGFGKSLQ-VLTRHASLGPGTAA-APSLXXXXXXXXXXXXXXPLGGGSG-------------------LTTKVPLTQDPG--TGEFDAWFAEGPLGMRLEEMPLTSREGGLKYVCQVLQVTSG-GAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFRLP 1009          
BLAST of mRNA_Ecto-sp13_S_contig11998.1704.1 vs. uniprot
Match: A0A7S2XZL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL0_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 5.840e-21
Identity = 67/141 (47.52%), Postives = 81/141 (57.45%), Query Frame = 0
Query:  389 MAIPTGVAGGFGNSLAKHRTFAVDVSPD--------------MATMSTKKALSDAPGEAVGEFDVGFGEGELGMRLEER--GSFKASSVVVKITEGAGQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHAKRPVVVRFR 513
            MA P  VAGGFG +L    +   + +PD              M  M+TKK L    G   GE DV FG G LG+RLEER  G     SVV  +TE AGQA   GV  G  ++G+NGE++LSHAHTV+TLKH KRP+ VR R
Sbjct:   22 MAAPPAVAGGFGKTLNVD-SGDNEANPDSMENAEGSSGGAASMTGMTTKKELGS--GLEDGEVDVTFGPGPLGLRLEERPGGGGAMISVVTSVTE-AGQADKQGVEVGSTIIGLNGEQFLSHAHTVSTLKHGKRPISVRLR 158          
BLAST of mRNA_Ecto-sp13_S_contig11998.1704.1 vs. uniprot
Match: A0A8J2SXS4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXS4_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.460e-16
Identity = 52/96 (54.17%), Postives = 64/96 (66.67%), Query Frame = 0
Query:  421 STKKALSDAPGEAVGEFDVGFGEGELGMRLEERGSFKASSVVVKITEGAGQAVSLGVREGCKVVGINGEKYLSHAHTVATLKHAKRPVVVRFRLPD 516
            ST K    +P +A  E+DV F  G LG RLEERG   A S+V  + + AGQA + GVR G  V+G+NGE+YLSHAHT ATLKH +RPV +R R  D
Sbjct:  452 STTKVGLPSPDDA-NEYDVTFESGPLGFRLEERGGLVAVSLVTSV-DAAGQAAAAGVRAGDVVLGVNGERYLSHAHTAATLKHGRRPVELRLRHSD 545          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11998.1704.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G861_ECTSI6.410e-26088.10ADP-ribosylation factor GTPase-activating protein,... [more]
W7TXK3_9STRA1.390e-3136.01Adp-ribosylation factor gtpase-activating (Fragmen... [more]
A0A4D9D4X6_9STRA2.680e-2936.63Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2XZL0_9STRA5.840e-2147.52Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A8J2SXS4_9STRA1.460e-1654.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 444..516
e-value: 1.6
score: 10.7
coord: 236..305
e-value: 5.0E-5
score: 32.7
IPR001478PDZ domainPROSITEPS50106PDZcoord: 236..305
score: 10.215
IPR001478PDZ domainPROSITEPS50106PDZcoord: 443..516
score: 9.129
NoneNo IPR availableGENE3D2.30.42.10coord: 231..304
e-value: 7.0E-7
score: 31.1
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 222..300

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11998contigEcto-sp13_S_contig11998:385..4976 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11998.1704.1mRNA_Ecto-sp13_S_contig11998.1704.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11998 385..4994 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11998.1704.1 ID=prot_Ecto-sp13_S_contig11998.1704.1|Name=mRNA_Ecto-sp13_S_contig11998.1704.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=522bp
MEERRVAVDRVRLRVPERTSPPSAPAAATAAAAAADSTHVTAVTGTTGER
VEGRRRSRKAKKGKEEQFSPAAAAGAGTGGGSEDRRHRKGGGGENAAVQG
SGRNGWEAAASAPGAWVAADTAQDRHEDFRAPGELRDDFFAENDGSGGSS
GDEEEAVSALAGYGRQDPGAADPPAFAAPAYAAGAYAAPRRMEGFGGGGS
GWRGGGEVASGGGGSVGKAAQQPVQSRGHTVVFPAGGMGLTLTKEMSGGC
SVTKVVPGGVADSRGVALGQRVCAVNGQPSGTYEHTMAVIGGSPRPISIT
FVMPTTGGGSGNGGRFSGVGGGPPVVQHTWADVGLAATIGAMDAANAVAV
EWGLGASTPGVLAGAQSSGAGDILPAPQGFRVHQKHSLMAIPTGVAGGFG
NSLAKHRTFAVDVSPDMATMSTKKALSDAPGEAVGEFDVGFGEGELGMRL
EERGSFKASSVVVKITEGAGQAVSLGVREGCKVVGINGEKYLSHAHTVAT
LKHAKRPVVVRFRLPDASGKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
IPR036034PDZ_sf