prot_Ecto-sp13_S_contig11717.1484.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11717.1484.1
Unique Nameprot_Ecto-sp13_S_contig11717.1484.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length316
Homology
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: A0A6H5JHY1_9PHAE (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY1_9PHAE)

HSP 1 Score: 471 bits (1211), Expect = 2.990e-161
Identity = 277/310 (89.35%), Postives = 279/310 (90.00%), Query Frame = 0
Query:    7 GSVTASSNARSGVDPSSASSRGPSAVSTGDHTSAAADARXXXXXXXXXXXGVVAGAAPVAVDEDGVTGPSLVIPTFRFTPTATVAQLSGAIPPPVMFPRDNTVPSLEQSFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLAAPEGSGSGSSSPLSSSFVNMFALPELK 316
            G V ASSN RSGVDP+S           GD  SAA    XXXXXXXXXXX      AP A DEDGVTGPSLVIPTFRFTPTAT AQLSGAIPPPVMFPRDNTVPSLEQ+FLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVL ARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLAAPEGSGSGS SPLSSSFVNMFALPELK
Sbjct:  119 GRVAASSNGRSGVDPTSTXXXXXXXXXXGDPRSAAXXXXXXXXXXXXXXXXXXXXXAPAAGDEDGVTGPSLVIPTFRFTPTATAAQLSGAIPPPVMFPRDNTVPSLEQTFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLSARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLAAPEGSGSGSPSPLSSSFVNMFALPELK 428          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: D7G2K8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K8_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 1.360e-122
Identity = 219/248 (88.31%), Postives = 221/248 (89.11%), Query Frame = 0
Query:   69 EDGVTGPSLVIPTFRFTPTATVAQLSGAIPPPVMFPRDNTVPSLEQSFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLAAPEGSGSGSSSPLSSSFVNMFALPELK 316
            EDGV GPSLVIPTFRFTPTAT                         +FLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVL ARGIRSTSIVGGRTRVERSSAVSSFTNDPSI+VILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLAAPEGSGSGSSSPLSSSFVNMFALPELK
Sbjct: 1300 EDGVAGPSLVIPTFRFTPTATA------------------------TFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLSARGIRSTSIVGGRTRVERSSAVSSFTNDPSIKVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLAAPEGSGSGSSSPLSSSFVNMFALPELK 1523          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: A0A835YV89_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV89_9STRA)

HSP 1 Score: 163 bits (412), Expect = 7.430e-42
Identity = 105/244 (43.03%), Postives = 142/244 (58.20%), Query Frame = 0
Query:   73 TGPSLVIPTFRFTPTATVAQLS-GAIPPPVMFP---RDNTVPSLEQSFLSQYRAATSSQS-SVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQ----------------------ALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLA 289
            TG S+ +P       A +      AIPPP   P   RD + PSL+  FL+ +RAA+++ +   KL AL+ D+   L  +P AKFV+FS   + + +A   L    ++  +I G  +   R +AV+ F  DPS+RV+LL  GSAAAGLTLTAASTVYML+P ++AADEAQ                      AL+RAHRIGQTH+VRCV+FY   ++EERLLALRH  G  A  L  + ++  LA
Sbjct:  364 TGSSVTLPDLSRAWRAPLGDTDLQAIPPPPGAPLHLRDPSAPSLDPLFLAHWRAASAAGAVGAKLRALIGDMRAVLRREPAAKFVVFSAAAEALAKAAEELNRATLKCVTISGAVSVARRGAAVTEFNTDPSVRVVLLAMGSAAAGLTLTAASTVYMLEPAFNAADEAQXXXXXXXXXEAQPXXXXXXXXXALSRAHRIGQTHSVRCVIFYCAGTLEERLLALRHESGGLASLLSGSGALTGLA 607          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: A0A4D9D770_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D770_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.570e-32
Identity = 94/227 (41.41%), Postives = 131/227 (57.71%), Query Frame = 0
Query:   79 IPTFRFTPTATVAQLSGAIPPPVMFPRDNTVPSLEQSFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQT-HTVRCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLAAPEGSGSGSSSPLSS 304
            IP     P A  A L   +P P    RDN++PSLE +FL+ YR  TS   S K+ ALV  L++TL  DP+AKFV+FSQ+P    +    L   G    S+       +R  AV +F++DP ++VIL+  G  AAGLTLTAAST+ +L+P  +  DEAQA++R HRIGQ   +V   V +   +VEER+L +R  +G+   FL+  D   +L+   G   GS   L+S
Sbjct:  544 IPQVGCPPAADEATLQ-RLPAPFACGRDNSLPSLEPAFLAHYRN-TSMVPSAKMQALVGILESTLSSDPSAKFVVFSQFPFTTVKP--CLDQHGFACVSVTAQCKMADRQQAVGAFSSDPDVKVILVGMGVGAAGLTLTAASTLILLEPSHNLGDEAQAMSRIHRIGQAASSVEIFVLFTPRTVEERMLKVRQDQGH--AFLQCGDDSAALSVTSGGDKGSHFSLAS 764          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: U6M8M0_EIMMA (Probable nucleotide exsicion repair protein RAD16, related n=1 Tax=Eimeria maxima TaxID=5804 RepID=U6M8M0_EIMMA)

HSP 1 Score: 112 bits (280), Expect = 6.420e-26
Identity = 62/151 (41.06%), Postives = 94/151 (62.25%), Query Frame = 0
Query:  122 AATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSK 272
            +A+S  SS K++ALV++L+     D   K ++FSQ+  ++D     L   GI+   + G  T V RS+ + +F NDP++RVIL++  +   GL L  AS +Y++DP W+ A E QA+ RAHRIGQT  V+ V F   D++EER+L L+  K
Sbjct:   53 SASSFTSSTKIEALVQELNMESEQDNQVKSIVFSQFCAMLDLIEFRLKREGIQCAQLTGSMTAVARSNVLYAFNNDPNLRVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQAIQRAHRIGQTKPVKGVRFICSDTIEERILQLQEKK 203          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: A0A7S0EPJ0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EPJ0_9EUKA)

HSP 1 Score: 108 bits (271), Expect = 1.270e-24
Identity = 57/146 (39.04%), Postives = 93/146 (63.70%), Query Frame = 0
Query:  127 QSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSK 272
            QSS K++AL+ +L      DP AK ++FSQ+  ++D     L   GIR+  + GG +  +R + ++SF  +P +RVIL++  +    L LT AS ++++DP W+ A E QA++RAHR+GQ   +R V F ++++VEER+L L+  K
Sbjct:   57 QSSTKIEALLEELHIMQEEDPAAKAIVFSQFVAMLDLIEHRLQKAGIRTVKLNGGMSIAQREAVLTSFKEEPGVRVILISLKAGGVALNLTVASRIFLMDPWWNPAAEYQAIDRAHRLGQHKPIRAVRFVVRNTVEERILRLQDKK 202          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: A0A1D3D8D2_9EIME (Snf2 rad54 helicase family protein n=2 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3D8D2_9EIME)

HSP 1 Score: 114 bits (286), Expect = 1.490e-24
Identity = 62/151 (41.06%), Postives = 92/151 (60.93%), Query Frame = 0
Query:  122 AATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSK 272
            +A+S  SS K++ALV++L T    DP  K ++FSQ+  ++D     L   GI    + G  T + RS+ + +F  DP +RVIL++  +   GL L  AS +Y++DP W+ A E QA+ RAHRIGQT  V+ V F   D++EER+L L+  K
Sbjct: 1480 SASSFTSSTKIEALVQELQTDYSEDPEVKSIVFSQFCAMLDLIEFRLKREGIHCAQLTGSMTAIARSNVLYAFNKDPHMRVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQAIQRAHRIGQTRPVKGVRFICSDTIEERILQLQEKK 1630          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: A0A1D2AFX2_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AFX2_AUXPR)

HSP 1 Score: 110 bits (274), Expect = 1.860e-24
Identity = 61/160 (38.12%), Postives = 98/160 (61.25%), Query Frame = 0
Query:  113 EQSFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSK 272
            + S LS++  A   QSS K++AL  ++   L  DP+AK ++FSQ+   +D     L   G+R   ++G ++  +R++ + +F+NDP +RV L++  +    L LTAAS  +++DP W+ A E QAL+R HR+GQ   +R V F +  SVEER+L L+  K
Sbjct:  110 KNSILSRFDTA-HFQSSTKIEALREEIHRMLERDPSAKAIVFSQFTSFLDLCSFRLQQCGVRCVQLLGSQSMEQRNTQIEAFSNDPDVRVFLMSLKAGGVALNLTAASHCFLMDPWWNPASEWQALDRIHRLGQYKPMRAVRFIIAGSVEERILKLQDKK 268          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: U6LJE8_9EIME (SNF2/RAD54 helicase family protein, putative n=1 Tax=Eimeria brunetti TaxID=51314 RepID=U6LJE8_9EIME)

HSP 1 Score: 111 bits (278), Expect = 1.690e-23
Identity = 61/151 (40.40%), Postives = 94/151 (62.25%), Query Frame = 0
Query:  122 AATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSK 272
            +A++  SS K++ALV++L+     D   K ++FSQ+  ++D     L   GI+   + G  T V RS+ + +F NDP++RVIL++  +   GL L  AS +Y++DP W+ A E QA+ RAHRIGQT  V+ V F   D++EER+L L+  K
Sbjct: 1573 SASNFTSSTKIEALVQELNMEAEQDAQIKSIVFSQFCAMLDLIEFRLKREGIQCAQLTGSMTAVARSNVLYAFNNDPNLRVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQAIQRAHRIGQTKPVKGVRFICSDTIEERILQLQEKK 1723          
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Match: U6K0P3_9EIME (SNF2/RAD54 helicase family protein, putative n=1 Tax=Eimeria mitis TaxID=44415 RepID=U6K0P3_9EIME)

HSP 1 Score: 111 bits (278), Expect = 1.690e-23
Identity = 61/151 (40.40%), Postives = 94/151 (62.25%), Query Frame = 0
Query:  122 AATSSQSSVKLDALVRDLDTTLLHDPTAKFVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSIRVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTVRCVVFYMKDSVEERLLALRHSK 272
            +A++  SS K++ALV++L+     D   K ++FSQ+  ++D     L   GI+   + G  T V RS+ + +F NDP++RVIL++  +   GL L  AS +Y++DP W+ A E QA+ RAHRIGQT  V+ V F   D++EER+L L+  K
Sbjct: 1594 SASNFTSSTKIEALVQELNMESEQDAQVKSIVFSQFCAMLDLIEFRLKREGIQCAQLTGSMTAVARSNVLYAFNNDPNLRVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQAIQRAHRIGQTKPVKGVRFICSDTIEERILQLQEKK 1744          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11717.1484.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHY1_9PHAE2.990e-16189.35Helicase C-terminal domain-containing protein n=1 ... [more]
D7G2K8_ECTSI1.360e-12288.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV89_9STRA7.430e-4243.03Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D770_9STRA2.570e-3241.41Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
U6M8M0_EIMMA6.420e-2641.06Probable nucleotide exsicion repair protein RAD16,... [more]
A0A7S0EPJ0_9EUKA1.270e-2439.04Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A1D3D8D2_9EIME1.490e-2441.06Snf2 rad54 helicase family protein n=2 Tax=Cyclosp... [more]
A0A1D2AFX2_AUXPR1.860e-2438.13Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
U6LJE8_9EIME1.690e-2340.40SNF2/RAD54 helicase family protein, putative n=1 T... [more]
U6K0P3_9EIME1.690e-2340.40SNF2/RAD54 helicase family protein, putative n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 162..245
e-value: 2.6E-13
score: 60.2
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 143..245
e-value: 2.1E-11
score: 44.2
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 131..294
score: 12.635
NoneNo IPR availableGENE3D3.40.50.300coord: 108..291
e-value: 3.4E-42
score: 146.2
NoneNo IPR availablePANTHERPTHR45626:SF17HELICASE-LIKE TRANSCRIPTION FACTORcoord: 117..277
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 117..277
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 113..280

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11717contigEcto-sp13_S_contig11717:407..4749 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11717.1484.1mRNA_Ecto-sp13_S_contig11717.1484.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11717 407..4749 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11717.1484.1 ID=prot_Ecto-sp13_S_contig11717.1484.1|Name=mRNA_Ecto-sp13_S_contig11717.1484.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
GARSSRGSVTASSNARSGVDPSSASSRGPSAVSTGDHTSAAADARAAGAG
SGAGSGGVVAGAAPVAVDEDGVTGPSLVIPTFRFTPTATVAQLSGAIPPP
VMFPRDNTVPSLEQSFLSQYRAATSSQSSVKLDALVRDLDTTLLHDPTAK
FVIFSQYPQVVDRAGIVLGARGIRSTSIVGGRTRVERSSAVSSFTNDPSI
RVILLTTGSAAAGLTLTAASTVYMLDPVWSAADEAQALNRAHRIGQTHTV
RCVVFYMKDSVEERLLALRHSKGNFAQFLESADSVVSLAAPEGSGSGSSS
PLSSSFVNMFALPELK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase