prot_Ecto-sp13_S_contig11707.1475.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig11707.1475.1
Unique Name	prot_Ecto-sp13_S_contig11707.1475.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	121

Homology

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.210e-73
Identity = 120/121 (99.17%), Postives = 121/121 (100.00%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV
Sbjct: 1014 KVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 1134

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: A0A6H5JNN2_9PHAE (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN2_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 6.960e-67
Identity = 111/121 (91.74%), Postives = 114/121 (94.21%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMT+   + CL   VGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV
Sbjct:  394 KVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTMTAAV-CL---VGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 510

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: A0A7S2HGK8_9STRA (DNA-directed RNA polymerase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HGK8_9STRA)

HSP 1 Score: 207 bits (526), Expect = 9.870e-65
Identity = 98/121 (80.99%), Postives = 108/121 (89.26%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VRIRNVR+PQIGDKFASRHGQKGTIGMTYRQEDMP++ +GIVPDIIVNPHAIPSRMTIAQLIECLLGKV V  G EGDATPFTDVTV ++S  LH +G+QKHGNE MY GHTGR LN +V
Sbjct:   30 KVRIRNVRIPQIGDKFASRHGQKGTIGMTYRQEDMPFTAEGIVPDIIVNPHAIPSRMTIAQLIECLLGKVVVFQGCEGDATPFTDVTVEDISKRLHAMGYQKHGNEAMYQGHTGRPLNARV 150

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: A0A7S3LGD2_9STRA (DNA-directed RNA polymerase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGD2_9STRA)

HSP 1 Score: 207 bits (527), Expect = 9.110e-64
Identity = 96/121 (79.34%), Postives = 110/121 (90.91%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VRIRNVR+PQ+GDKFASRHGQKGTIGMTYRQEDMP++++GIVPDIIVNPHAIPSRMTIAQLIECLLGKV V  G EGDATPFTDVTV ++S+ LH +G+QKHGNE +Y GHTGR LN +V
Sbjct:  125 KVRIRNVRIPQVGDKFASRHGQKGTIGMTYRQEDMPFTVEGIVPDIIVNPHAIPSRMTIAQLIECLLGKVCVFQGCEGDATPFTDVTVEDISTRLHAMGYQKHGNEALYQGHTGRPLNARV 245

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: A0A7S3Y3D8_HETAK (DNA-directed RNA polymerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3D8_HETAK)

HSP 1 Score: 206 bits (525), Expect = 1.470e-62
Identity = 96/121 (79.34%), Postives = 109/121 (90.08%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VRIRN+RVPQIGDKFASRHGQKGTIGMTYRQEDMP++ +GI PD+IVNPHAIPSRMTI  L+ECLLGKV   TGTEGDATPFTDVTV N+S TLH++G+Q+HGNE M+SGHTGRML  KV
Sbjct:  207 KVRIRNLRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTQEGISPDLIVNPHAIPSRMTIGHLVECLLGKVTSQTGTEGDATPFTDVTVENISDTLHRLGYQRHGNETMFSGHTGRMLKAKV 327

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 213 bits (542), Expect = 9.930e-62
Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMP+S++GI PD+I+NPHAIPSRMTIA LIE L+GK G+L GTEGDATPFTDVTVA++SS LH++G+QKHGNE MYSGHTGRML +KV
Sbjct:  928 KVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPFSVEGITPDLIINPHAIPSRMTIAHLIETLMGKFGLLVGTEGDATPFTDVTVADISSRLHQMGYQKHGNETMYSGHTGRMLTSKV 1048

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: A0A7S1UIJ8_9STRA (DNA-directed RNA polymerase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UIJ8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.980e-61
Identity = 89/121 (73.55%), Postives = 107/121 (88.43%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VR+RN+RVPQIGDKF+SRHGQKGTIGMTYRQEDMPW+++G+VPDIIVNPHAIPSRMTI QL+ECL+GKV    G+E DAT F +VTV +VS  LHKIG+Q+HGNE +YSGHTGRM+  +V
Sbjct:   42 KVRVRNIRVPQIGDKFSSRHGQKGTIGMTYRQEDMPWTVEGVVPDIIVNPHAIPSRMTIGQLVECLMGKVSSKAGSEADATAFAEVTVDDVSKVLHKIGYQRHGNEAIYSGHTGRMICPRV 162

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: A0A4P6JBU4_9LAMI (DNA-directed RNA polymerase (Fragment) n=10 Tax=Utricularia TaxID=13747 RepID=A0A4P6JBU4_9LAMI)

HSP 1 Score: 192 bits (488), Expect = 2.280e-60
Identity = 87/121 (71.90%), Postives = 102/121 (84.30%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VR+R+VR+PQIGDKF+SRHGQKGTIGMTY QEDMPW+++GI PDIIVNPHAIPSRMTI QLIEC++GKV    G EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L+  +
Sbjct:   48 KVRVRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVENISKALHKCGYQMRGFETMYNGHTGRRLSAMI 168

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: Q70NR8_ERYGU (DNA-directed RNA polymerase (Fragment) n=1 Tax=Erythranthe guttata TaxID=4155 RepID=Q70NR8_ERYGU)

HSP 1 Score: 191 bits (484), Expect = 6.510e-60
Identity = 87/121 (71.90%), Postives = 101/121 (83.47%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            ++R+R+VR+PQIGDKF+SRHGQKGTIGMTY QEDMPWSI+GI PDIIVNPHAIPSRMTI QLIEC++GKV    G EGDATPFTDVTV ++S  LHK G+Q  G E MY+GHTGR L   +
Sbjct:   49 KIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDSISKALHKCGYQMRGFETMYNGHTGRQLTAMI 169

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BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Match: A0A0D2ZXJ9_BRAOL (DNA-directed RNA polymerase n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D2ZXJ9_BRAOL)

HSP 1 Score: 189 bits (481), Expect = 7.820e-60
Identity = 86/121 (71.07%), Postives = 101/121 (83.47%), Query Frame = 0

Query:    1 QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 121
            +VR+R+VR+PQIGDKF+SRHGQKGT+GMTY QEDMPW+I+G+ PDIIVNPHAIPSRMTI QLIEC++GKV    G EGDATPFTDVTV N+S  LHK G+Q  G E MY+GHTGR L   +
Sbjct:   18 KVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAQMGKEGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLPAMI 138

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig11707.1475.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FHZ3_ECTSI	1.210e-73	99.17	DNA-directed RNA polymerase subunit beta n=1 Tax=E...	[more]
A0A6H5JNN2_9PHAE	6.960e-67	91.74	DNA-directed RNA polymerase subunit beta n=1 Tax=E...	[more]
A0A7S2HGK8_9STRA	9.870e-65	80.99	DNA-directed RNA polymerase n=1 Tax=Helicotheca ta...	[more]
A0A7S3LGD2_9STRA	9.110e-64	79.34	DNA-directed RNA polymerase n=1 Tax=Amphora coffei...	[more]
A0A7S3Y3D8_HETAK	1.470e-62	79.34	DNA-directed RNA polymerase n=1 Tax=Heterosigma ak...	[more]
A0A835YQ41_9STRA	9.930e-62	81.82	DNA-directed RNA polymerase subunit beta n=1 Tax=T...	[more]
A0A7S1UIJ8_9STRA	1.980e-61	73.55	DNA-directed RNA polymerase n=2 Tax=Phaeomonas par...	[more]
A0A4P6JBU4_9LAMI	2.280e-60	71.90	DNA-directed RNA polymerase (Fragment) n=10 Tax=Ut...	[more]
Q70NR8_ERYGU	6.510e-60	71.90	DNA-directed RNA polymerase (Fragment) n=1 Tax=Ery...	[more]
A0A0D2ZXJ9_BRAOL	7.820e-60	71.07	DNA-directed RNA polymerase n=1 Tax=Brassica olera...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007120	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	PFAM	PF00562	RNA_pol_Rpb2_6	coord: 1..121 e-value: 5.9E-49 score: 167.2
IPR037033	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	GENE3D	2.40.270.10		coord: 1..121 e-value: 5.8E-45 score: 155.4
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 1..121
None	No IPR available	PANTHER	PTHR20856:SF7	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2	coord: 1..121
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 2..121
IPR007121	RNA polymerase, beta subunit, conserved site	PROSITE	PS01166	RNA_POL_BETA	coord: 13..25

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig11707	contig	Ecto-sp13_S_contig11707:3571..4638 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig11707.1475.1	mRNA_Ecto-sp13_S_contig11707.1475.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig11707 3571..4638 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig11707.1475.1 ID=prot_Ecto-sp13_S_contig11707.1475.1|Name=mRNA_Ecto-sp13_S_contig11707.1475.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
QVRIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNP
HAIPSRMTIAQLIECLLGKVGVLTGTEGDATPFTDVTVANVSSTLHKIGF
QKHGNEVMYSGHTGRMLNTKV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR007120	DNA-dir_RNAP_su2_dom
IPR037033	DNA-dir_RNAP_su2_hyb_sf
IPR015712	DNA-dir_RNA_pol_su2
IPR007121	RNA_pol_bsu_CS