prot_Ecto-sp13_S_contig1164.1420.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1164.1420.1
Unique Nameprot_Ecto-sp13_S_contig1164.1420.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length474
Homology
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: D8LKQ4_ECTSI (Poly(Rc) binding protien (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ4_ECTSI)

HSP 1 Score: 515 bits (1326), Expect = 9.380e-180
Identity = 297/336 (88.39%), Postives = 299/336 (88.99%), Query Frame = 0
Query:  141 MHPRHLGGPPSAAGGAGGQRGMPSPRSGPVGAAGRGPPP-MRPLPQNGGGVGGPCRRPDHLMVGPLGDSMFGGSPGTCGGGMGLXXXXXXXX-GGSLGMETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHXXXXXXXXXXXXXXXXSSSIHGGLHNGDGXXXXXXXXXXXXXXXXXXXXXXXXXXPAEREGGPPAGIPLPLPMLMDRVMTAMGSFDA 474
            MHPRHLGGPPSAAG AGGQRGMPSPRSGPVGAAGRGPPP MR LPQNGGGVGGPCRRPDHLMVGPLGD MFGGSPGTCGGGMGLXXXXXXXX GGSLGMETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLH DSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPH                SSSIHGGL NGDG          X XXXXXXXXXXX   PAEREGGPPAGIPLPLPMLMDRVMTAMGS++A
Sbjct:    1 MHPRHLGGPPSAAGVAGGQRGMPSPRSGPVGAAGRGPPPPMRLLPQNGGGVGGPCRRPDHLMVGPLGDPMFGGSPGTCGGGMGLXXXXXXXXXGGSLGMETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHGDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHHPPTPQAGGPGPGGPQSSSIHGGLPNGDGGPRGGGPGVGXSXXXXXXXXXXX---PAEREGGPPAGIPLPLPMLMDRVMTAMGSYNA 333          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A6H5L8U0_9PHAE (KH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8U0_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 8.020e-75
Identity = 170/186 (91.40%), Postives = 171/186 (91.94%), Query Frame = 0
Query:  289 MVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHXXXXXXXXXXXXXXXXSSSIHGGLHNGDGXXXXXXXXXXXXXXXXXXXXXXXXXXPAEREGGPPAGIPLPLPMLMDRVMTAMGSFDA 474
            MVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPH        XXXXXXXX   IHGGL +GDG  XXXXXXXXXXXXXXXXXXXXXXX PAEREGGPPAGIPLPLPMLMDRVMTAMGSFDA
Sbjct:    1 MVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHHTPTPQAGXXXXXXXXXXXIHGGLPHGDGGPXXXXXXXXXXXXXXXXXXXXXXX-PAEREGGPPAGIPLPLPMLMDRVMTAMGSFDA 185          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A836CIH4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH4_9STRA)

HSP 1 Score: 132 bits (331), Expect = 1.260e-29
Identity = 87/171 (50.88%), Postives = 104/171 (60.82%), Query Frame = 0
Query:  238 ETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDS------CTGLHDDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLA--------GGDPDCVANS--------FRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPP 386
            E VSRVLIPN KIGAVIGKGGAI+KHIRE SGA+VTISD+        G      +R+V   G+F +V  A   IL+HA     + +P+ GLA         G+     ++        FR+LIPN KAG LIGRGG TIKAIR+ SGARIEISSH      + G LPAPP
Sbjct:  105 EAVSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLVHLVGSFGAVVAALGAILAHA-ETPSNGEPLPGLAQLVAGGLLSGEAAAAVDAAITVPPSAFRMLIPNAKAGALIGRGGTTIKAIRDASGARIEISSH------LAGNLPAPP 268          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A835Z8V5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8V5_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.420e-26
Identity = 83/173 (47.98%), Postives = 102/173 (58.96%), Query Frame = 0
Query:  238 ETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDS------CTGLHDDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAG--------GDPDCVA----------NSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPP 386
            E +SRVLIPN KIGAVIGKGGAI+KHIRE SGA+VTISD+        G      +R++   G+F +V  AF  IL+HA     + DP+ GLA         G+    A          + FR+LI + KAG LIGR G TIKAIR+ SGARI+ISSH      + G LP PP
Sbjct:  293 EAMSRVLIPNAKIGAVIGKGGAIVKHIRECSGARVTISDAGDDAGWAGGGGPGGGERLLHIIGSFFAVVTAFGAILAHA-ETPSNGDPLPGLAALVASGMLSGEATSAAALEAALPLPPSGFRMLISSAKAGALIGRAGATIKAIRDASGARIDISSH------LAGGLPVPP 458          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A8J2T296_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T296_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.670e-15
Identity = 51/134 (38.06%), Postives = 77/134 (57.46%), Query Frame = 0
Query:  242 RVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDS-----CTGLHDDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISS 370
            ++L+P+   G VIGKGGA++ HIR+ SG +V + +S       G      +R++T +G F SV  AF  +L H  A  P ADP++      P  V     +L+P  K GGLIGRGG +I  +R+ SGA +++ +
Sbjct:  102 KLLLPHAACGIVIGKGGAMVSHIRDASGCQVDVQESPAPPPMAGGVQGGSERIITLSGDFGSVYAAFQMVLQHLAAAQP-ADPLLTTR--PPGSV--EAVVLVPRNKTGGLIGRGGASINRVRQDSGATVKVGA 230          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A0D6QYY3_ARACU (Uncharacterized protein n=3 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6QYY3_ARACU)

HSP 1 Score: 80.9 bits (198), Expect = 1.600e-12
Identity = 55/141 (39.01%), Postives = 74/141 (52.48%), Query Frame = 0
Query:  234 SLGMETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDDSDDRMVTAAG------TFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEI 368
            S G E V RVL PN KIG VIGKGG+IIK +R+  G K+ ++D   G    SDDR++  +         +  Q A  HI +    +GPD D V+            + RLL+P  + G LIG+GG  I  +R  +GA I I
Sbjct:  304 SSGEEIVFRVLCPNKKIGGVIGKGGSIIKSLRDEIGVKIKVTDVVPG----SDDRIIIISSHEVPEEDLSPAQEALLHIQTQIVDLGPDKDGVI------------TTRLLVPANQVGCLIGKGGSIISEMRRATGANIRI 428          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A7S3JWP9_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWP9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.250e-12
Identity = 51/141 (36.17%), Postives = 77/141 (54.61%), Query Frame = 0
Query:  234 SLGMETV-SRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDDS---DDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISS 370
            SL   T+ +++LIPN K+G VIGKGGA+I HIRE S A + I++     ++ S    +R++T  G F +V  AF  +  H        DP        P  +  +  +L+P  K GGLIGR G +I  +R  SGA +++ +
Sbjct:  150 SLAGRTIEAKLLIPNTKVGIVIGKGGAMINHIRESSKASLDIAEPGQQNNNQSALPQERVLTFNGDFAAVYTAFQMVQQHLSVASQQQDPNNSTVV-PPSLIETT--ILVPRNKTGGLIGRSGASINRVRNDSGATVKVGA 287          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A7S4F4T8_CHRCT (Hypothetical protein (Fragment) n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F4T8_CHRCT)

HSP 1 Score: 77.4 bits (189), Expect = 3.640e-12
Identity = 50/139 (35.97%), Postives = 80/139 (57.55%), Query Frame = 0
Query:  240 VSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDDSDDRMVTAAGTFNSVQLA---FTHILSHAGAVGPDA-----DPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISS 370
            V R++IPN ++G +IGKGGA IK IRE+SG K+ I+D   G    S +R+V+  G+   V  A      ++   G+   D      +P M   G      +++ +L++ N + GG+IG+GG  IK +RE+SGA I++ +
Sbjct:   38 VLRLMIPNTQVGTIIGKGGANIKGIRELSGCKMQIADMVIG----STERLVSITGSVTGVTKAVELMLGVIEEPGSKTSDGGSSALNPEMASEGTGQ---SHTLKLVLNNNQVGGIIGKGGSMIKQMREESGAFIKVEA 169          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A199W9R2_ANACO (Protein BTR1 n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A199W9R2_ANACO)

HSP 1 Score: 75.5 bits (184), Expect = 2.950e-11
Identity = 49/141 (34.75%), Postives = 75/141 (53.19%), Query Frame = 0
Query:  242 RVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDDSDDRMVTAAGTFNSVQLAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHFHPVHGPL 382
            R L+ N   G++IGKGGA I  I+  SGA++ +S +       + DR++  +G+F+ V  A   IL    A   ++  V            +  RL++PN   GG+IG+GG TIK++ E S A I+IS    HF+ +H  L
Sbjct:   38 RFLVSNTAAGSIIGKGGASINEIQSQSGARIQLSRN-NECFPGTSDRIIMISGSFDEVIRAMELILEKLVAEAEESSDVES---------RSKVRLVVPNSSCGGIIGKGGSTIKSLIEDSHAGIKISPQDNHFNGLHDRL 168          
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Match: A0A1U8AVM9_NELNU (protein BTR1 isoform X1 n=3 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8AVM9_NELNU)

HSP 1 Score: 74.3 bits (181), Expect = 6.580e-11
Identity = 50/143 (34.97%), Postives = 74/143 (51.75%), Query Frame = 0
Query:  238 ETVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDDSDDRMVTAAGTFNSV----QLAFTHILSHAGAV-GPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGRGGCTIKAIREQSGARIEISSHAFHF 375
             T  + L+ N   G+VIGKGG+ I   +  SGA++ +S +       + DR++  +G FN +    +L    +LS A A  G DADP             +  RL++PN   GG+IG+GG TIK+  E S A I+IS    +F
Sbjct:   33 HTYIKFLVSNAAAGSVIGKGGSTITDFQSQSGARIQLSRNHE-FFPGTSDRIIMISGAFNDIIKAMELILAKLLSEAHAEDGDDADP------------KSKVRLIVPNSSCGGIIGKGGATIKSFIEDSQAGIKISPQDHNF 162          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1164.1420.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKQ4_ECTSI9.380e-18088.39Poly(Rc) binding protien (Partial) (Fragment) n=1 ... [more]
A0A6H5L8U0_9PHAE8.020e-7591.40KH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A836CIH4_9STRA1.260e-2950.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8V5_9STRA4.420e-2647.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2T296_9STRA5.670e-1538.06Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0D6QYY3_ARACU1.600e-1239.01Uncharacterized protein n=3 Tax=Araucariaceae TaxI... [more]
A0A7S3JWP9_9STRA3.250e-1236.17Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4F4T8_CHRCT3.640e-1235.97Hypothetical protein (Fragment) n=2 Tax=Chrysotila... [more]
A0A199W9R2_ANACO2.950e-1134.75Protein BTR1 n=2 Tax=Ananas comosus TaxID=4615 Rep... [more]
A0A1U8AVM9_NELNU6.580e-1134.97protein BTR1 isoform X1 n=3 Tax=Nelumbo nucifera T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004087K Homology domainSMARTSM00322kh_6coord: 331..466
e-value: 7.4E-5
score: 32.1
coord: 237..311
e-value: 9.3E-13
score: 58.4
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 234..312
e-value: 5.1E-18
score: 66.4
IPR036612K Homology domain, type 1 superfamilyGENE3D3.30.1370.10coord: 331..379
e-value: 6.7E-12
score: 47.0
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 236..309
IPR036612K Homology domain, type 1 superfamilySUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 334..371
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 335..369
e-value: 2.8E-9
score: 36.7
coord: 241..307
e-value: 1.4E-13
score: 50.5
NoneNo IPR availablePANTHERPTHR10288KH DOMAIN CONTAINING RNA BINDING PROTEINcoord: 238..368
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 238..306
score: 16.122
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 332..368
score: 12.622

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1164contigEcto-sp13_S_contig1164:5929..10181 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1164.1420.1mRNA_Ecto-sp13_S_contig1164.1420.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1164 5929..10181 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1164.1420.1 ID=prot_Ecto-sp13_S_contig1164.1420.1|Name=mRNA_Ecto-sp13_S_contig1164.1420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=474bp
MIMDPAGHHHHHYHNMPPPFLRQQHEQPTYNHGSHSSSSVSKSNAAGAVN
TRHDMPHGGTPPPPLGSHHFHAPPPSGWIERQQQHPQPSRSSTPSSSSTN
SSISSAASNNNHPVPRRSPRGSPASLRFEGGSFPPVLHHNMHPRHLGGPP
SAAGGAGGQRGMPSPRSGPVGAAGRGPPPMRPLPQNGGGVGGPCRRPDHL
MVGPLGDSMFGGSPGTCGGGMGLGGGGGGGEGGSLGMETVSRVLIPNCKI
GAVIGKGGAIIKHIREVSGAKVTISDSCTGLHDDSDDRMVTAAGTFNSVQ
LAFTHILSHAGAVGPDADPVMGLAGGDPDCVANSFRLLIPNVKAGGLIGR
GGCTIKAIREQSGARIEISSHAFHFHPVHGPLPAPPHHPPTPQAGGAGGA
GPQSSSIHGGLHNGDGGPRAGGGGGPGVGGSNNNNGFGGSGGPAEREGGP
PAGIPLPLPMLMDRVMTAMGSFDA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004087KH_dom
IPR036612KH_dom_type_1_sf
IPR004088KH_dom_type_1