prot_Ecto-sp13_S_contig11540.1349.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11540.1349.1
Unique Nameprot_Ecto-sp13_S_contig11540.1349.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length526
Homology
BLAST of mRNA_Ecto-sp13_S_contig11540.1349.1 vs. uniprot
Match: D8LR75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR75_ECTSI)

HSP 1 Score: 546 bits (1406), Expect = 2.900e-185
Identity = 380/525 (72.38%), Postives = 387/525 (73.71%), Query Frame = 0
Query:    4 DGAMQDDDLWRRAFSANAGLFFDEQADFGPLLTGGDDQAAVTAAAGVTDPVVGMP-LPSPAPISCNVASIAPMPFIAAGPTPARQQQKHQSHVRVQIACRPSTLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRKIGRAPESARSRANMPAALSSNAAESTADSLEQQAAADGSPAEQQQASHFLLFKARCLAGAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEASSCAHLKGALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARLAEALRQXXXXXXXXXXDSPAHVESGAXXXXXDGETTARKXXXXXGSHGRDSGCTSGAA-AAAGVSSSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCSWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGTXXXXXXXXXXXVARSAVSPPAPPPTWQSIYGRLHRDVQAPSGTFRPSHMVIGRSVQEGVAVWIALNRRSNGMTGRSVMTRGSTGLRTTEV 526
            DGAMQDDDLWRRAFS NAGLFFDEQADFGPLLTG D  AA+ AAAGV DPVVGMP                                    HVRVQIACRPSTL+A XXXXXXXXXXXXXXXXXXXXXXXXX  QRKIG APESARS+AN+PAALS                                       GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEA         LVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASL AR AEALRQ  XXXXXXXX          XXXXX        XXXXX SHG DSG   G A A  GV+SSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKC+WDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADG   XXX      VARSAVSPPAPPPTWQSIYGRLH DV APSGTF PSHMVIGRSVQEGVAVWIAL RRSNGMTGRSVMT+GSTGLRTTEV
Sbjct:    2 DGAMQDDDLWRRAFSTNAGLFFDEQADFGPLLTGDDTAAALIAAAGVADPVVGMPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPHVRVQIACRPSTLVAAXXXXXXXXXXXXXXXXXXXXXXXXXRQQRKIGPAPESARSKANLPAALSXXXXXXXXXXX-----------XXXXXXXXXXXXXXXXXGAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEA---------LVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLSARFAEALRQLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGLDSGGAGGGAEAVVGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGKGKXXX------VARSAVSPPAPPPTWQSIYGRLHGDVHAPSGTFCPSHMVIGRSVQEGVAVWIALTRRSNGMTGRSVMTQGSTGLRTTEV 500          
BLAST of mRNA_Ecto-sp13_S_contig11540.1349.1 vs. uniprot
Match: A0A6H5JYB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB8_9PHAE)

HSP 1 Score: 463 bits (1192), Expect = 8.320e-155
Identity = 284/330 (86.06%), Postives = 289/330 (87.58%), Query Frame = 0
Query:  198 GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEASSCAHLKGALVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARLAEALRQXXXXXXXXXXDSPAHVESGAXXXXXDGETTARKXXXXX-GSHGRDSGCTSGAAAAAGVSSSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCSWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGTXXXXXXXXXXXVARSAVSPPAPPPTWQSIYGRLHRDVQAPSGTFRPSHMVIGRSVQEGVAVWIALNRRSNGMTGRSVMTRGSTGLRTTEV 526
            GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEA         LVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARLAEALRQXXXXXXXXXX          XXXXX        XXXXX GSHGRDSG  SGA A AGV+SSAKVFGQLLSLSVFGFLGPQSLEEASKVSR+WRDKC+WDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGT  XXXXX    VARS +SPPAPPPTWQSIYGRLHRDV APSGTF PSHMVIGRSVQEGVAVWIALNRRSNGMTGRSVMT+GSTGLRTTEV
Sbjct:   41 GAPNQRGGESFSRKRDRAKLLRQQMNDGLDNLHEA---------LVEISTSGANLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARLAEALRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSHGRDSGGASGAVATAGVASSAKVFGQLLSLSVFGFLGPQSLEEASKVSRDWRDKCTWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGTGKXXXXXKG--VARSVLSPPAPPPTWQSIYGRLHRDVHAPSGTFCPSHMVIGRSVQEGVAVWIALNRRSNGMTGRSVMTQGSTGLRTTEV 359          
BLAST of mRNA_Ecto-sp13_S_contig11540.1349.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 8.080e-46
Identity = 137/194 (70.62%), Postives = 144/194 (74.23%), Query Frame = 0
Query:    4 DGAMQDDDLWRRAFSANAGLFFDEQADFGPLLTGGDDQAAVTAAAGVTDPVVGMPLPSPAPISCNVASIAPMPFIAAGPTPARQQQKHQSHVRVQIACRPSTLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRKIGRAPESARSRANMPAALSSNAAESTADSLEQQAAADGSPAEQQQASHFLLFKARCLA 197
            DG MQDDDLWRRAFSANAGLF DEQADFGPLLTGGDD AAVTAAAGV DPVVGMP                               +HQ HVRVQIACRPSTL+A  XXXXXXXXXXXXXXXXXXXXXXXXX QR+IG APESARSR NMPAALSSNAAESTA +LEQQ AA+G PAE+QQAS  L  + RC A
Sbjct:    2 DGVMQDDDLWRRAFSANAGLFVDEQADFGPLLTGGDDPAAVTAAAGVADPVVGMPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHQPHVRVQIACRPSTLVATPXXXXXXXXXXXXXXXXXXXXXXXXXQQRRIGPAPESARSRVNMPAALSSNAAESTAAALEQQVAAEGPPAEKQQASFCLSLRGRCPA 195          
BLAST of mRNA_Ecto-sp13_S_contig11540.1349.1 vs. uniprot
Match: A0A835YLV5_9STRA (BHLH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV5_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.020e-19
Identity = 62/188 (32.98%), Postives = 86/188 (45.74%), Query Frame = 0
Query:  364 SSSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDKCSWDCNWSTLCVSRWRLGPEQRHAEVWRV-----------------PDDADGTXXXXXXXXXXXVARSAVSPPA---PPPTWQSIYGRLHRDVQAPSGTFRPSHM----------------VIGRSVQEGVAVWIALNRRSNGMTGRSVMT 515
            S++A VFG   +L +  FL   SLE A +  R+WR +C+WDC W+  C +RWRL  + R  E W+                  P+   G            + +    P A   PP +W+ +Y  LHR+++ P G    S                  VIGR+   G  VW+AL RRSNGMT RSV+T
Sbjct:  287 SAAAAVFGASCALPIHAFLDAASLEAARRACRDWRARCAWDCTWARQCAARWRLRGQDRALEAWQARFSRVSNAQRLRRRDCAPETRAGALLRAGERCHAQLEQYYRDPEALAAPPVSWREVYCALHRELRLPDGALCVSAAAXXXXXAPHALGRGEDVIGRAAGGGACVWVALCRRSNGMTARSVVT 474          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11540.1349.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LR75_ECTSI2.900e-18572.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYB8_9PHAE8.320e-15586.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU73_9PHAE8.080e-4670.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A835YLV5_9STRA7.020e-1932.98BHLH domain-containing protein n=1 Tax=Tribonema m... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1280.50coord: 366..472
e-value: 1.6E-6
score: 30.0
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 375..433

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11540contigEcto-sp13_S_contig11540:51..4056 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11540.1349.1mRNA_Ecto-sp13_S_contig11540.1349.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11540 51..4056 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11540.1349.1 ID=prot_Ecto-sp13_S_contig11540.1349.1|Name=mRNA_Ecto-sp13_S_contig11540.1349.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=526bp
MDGDGAMQDDDLWRRAFSANAGLFFDEQADFGPLLTGGDDQAAVTAAAGV
TDPVVGMPLPSPAPISCNVASIAPMPFIAAGPTPARQQQKHQSHVRVQIA
CRPSTLLAAPPPHAPPASEEPPSATARPAPPPSQRQQRKIGRAPESARSR
ANMPAALSSNAAESTADSLEQQAAADGSPAEQQQASHFLLFKARCLAGAP
NQRGGESFSRKRDRAKLLRQQMNDGLDNLHEASSCAHLKGALVEISTSGA
NLSASAATSLIPTRGPRRAAVVACSAGLVRDLISTCIALRKDKASLLARL
AEALRQQQQQQQGASGDSPAHVESGAAGAAGDGETTARKKHDDGGSHGRD
SGCTSGAAAAAGVSSSAKVFGQLLSLSVFGFLGPQSLEEASKVSREWRDK
CSWDCNWSTLCVSRWRLGPEQRHAEVWRVPDDADGTGKGKRKSKSKSVAR
SAVSPPAPPPTWQSIYGRLHRDVQAPSGTFRPSHMVIGRSVQEGVAVWIA
LNRRSNGMTGRSVMTRGSTGLRTTEV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036047F-box-like_dom_sf