prot_Ecto-sp13_S_contig11407.1236.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11407.1236.1
Unique Nameprot_Ecto-sp13_S_contig11407.1236.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length317
Homology
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: A0A6H5KLB8_9PHAE (IBR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB8_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.310e-51
Identity = 86/147 (58.50%), Postives = 99/147 (67.35%), Query Frame = 0
Query:  168 GSWCPLGHFLCPSCTTQYVEKTLLPEGVVWWDTINCVDPECTEHKEGASVRRCLSQTIVESINASQLEIVSMIEAEARRECDSTSRAVDDRASEALVAQSTKPCPRCGAPSVKVDGCKHINKCRCGFEYCWDCGKSWVRGHLSVSCA 314
            GSWC  GH LC  CTTQYV +TLLP G+VWWD I CVDPEC  H  G SV+ CL   +   I+A+QLE+V  I  EARRE +  +R  +DRAS A VA+STK CP CG  + K+ GCKHI KCRC   YCWDC   W  GHLSV CA
Sbjct:  161 GSWCAFGHALCAKCTTQYVGETLLPWGIVWWDRIRCVDPECDAHMVGLSVQLCLDSDLRSHIDAAQLEVVPNIGPEARRERERAARTAEDRASVATVAKSTKRCPNCGVATEKIGGCKHI-KCRCRHGYCWDCLIEWKPGHLSVPCA 306          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 3.420e-49
Identity = 76/103 (73.79%), Postives = 91/103 (88.35%), Query Frame = 0
Query:   32 RRQGRNERLAEFVRSTISGEITEVPGIAERGAELLAAGEGDEVVTNTYQLIGKFLALRGPDKDDNKVESAEQCDKFWLWLQAKGINSNRTGIVKAIAEKVNTW 134
            R +  +++LAEF+RS ++G++TEVPGIA RGAE+LA GEGD+ VTNTYQLIGKFLALRGPDK D++V+S E CDKFW WLQAKGINSNR+GIV AIAEKVNTW
Sbjct:   10 RSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTW 112          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: D8LB34_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB34_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 3.350e-48
Identity = 83/147 (56.46%), Postives = 96/147 (65.31%), Query Frame = 0
Query:  168 GSWCPLGHFLCPSCTTQYVEKTLLPEGVVWWDTINCVDPECTEHKEGASVRRCLSQTIVESINASQLEIVSMIEAEARRECDSTSRAVDDRASEALVAQSTKPCPRCGAPSVKVDGCKHINKCRCGFEYCWDCGKSWVRGHLSVSCA 314
            GSWC  GH LC  CTTQYVEKTLLP G+VWWD I CVDPEC  H  G SV+ CL   +   I+A+QLE+V  I  EARRE +  +R  +DR S A VA +TKPCP CG  + K  GCKHI  C C  EYCWDC  +W  GH   +CA
Sbjct:  228 GSWCASGHALCAECTTQYVEKTLLPWGIVWWDRIKCVDPECDAHMVGLSVQGCLGSDLRSHIDAAQLEVVPNIGPEARRERERAARTAEDRESAATVATTTKPCPNCGVATEKNGGCKHIT-CTCSHEYCWDCRMAWKSGHR-CACA 372          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: D8LB33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB33_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.620e-38
Identity = 82/205 (40.00%), Postives = 110/205 (53.66%), Query Frame = 0
Query:  113 AKGINSNRTGIVKAIAEKVNTWTSEPRRERARAAEASRQYPRCILE---CGDDEEDLQGSWCPLGHFLCPS-CTTQYVEKTLLPEGVVWWDTINCVDPECTEHKEGASVRRCLSQTIVESINASQLEIVSMIEAEARRECDSTSRAVDDRASEALVAQSTKPCPRCGAPSVKVDGCKHINKCRCGFEYCWDCGKSWVRGHLSVSC 313
            A+G  S    +++  +  V+ W +  + + A  +E S     C+L    C +   D +            + CTTQYVEKTLLP G VWWD I CVDP+C  H  G SV+RCL   +   I+A+QL++V MI  EAR E +  +R  +DRAS   VA +TKPCP C   + K  GCKH+    C  EYCW C   W  GHL  +C
Sbjct:  659 ARGFGSRINSVLRRTSSVVSVWPAG-KTDGAPTSETSSSGTECVLFHELCENMVTDSRXXXXXXXXXXXXADCTTQYVEKTLLPRGTVWWDRIRCVDPDCDAHMVGLSVQRCLGSDLRSRIDAAQLDVVPMIGPEARHERERAARTPEDRASATTVATTTKPCPNCEVATEKNKGCKHMVCSMCNHEYCWICRSEWTPGHLRDTC 862          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: K0QZN8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC)

HSP 1 Score: 133 bits (334), Expect = 4.330e-35
Identity = 61/101 (60.40%), Postives = 77/101 (76.24%), Query Frame = 0
Query:   32 RRQGRNERLAEFVRSTISGEITEVPGIAERGAELLAAGEGDEVVTNTYQLIGKFLALRGPDKDDNKVESAEQCDKFWLWLQAKGINSNRTGIVKAIAEKVN 132
            R +  ++ L +F+R+ + G+ITEVPGI    A+ LA GE DE +TNTYQLIGKFL L+GPD DDNKVES E C+KFW WLQ K I+++R+ IVKAIA KVN
Sbjct:   10 RSRVSDDSLMDFIRAQVQGDITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNKVESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVN 110          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: B8CF00_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CF00_THAPS)

HSP 1 Score: 130 bits (327), Expect = 2.930e-34
Identity = 58/93 (62.37%), Postives = 75/93 (80.65%), Query Frame = 0
Query:   40 LAEFVRSTISGEITEVPGIAERGAELLAAGEGDEVVTNTYQLIGKFLALRGPDKDDNKVESAEQCDKFWLWLQAKGINSNRTGIVKAIAEKVN 132
            + +F+R +++G+ITEVPGI    A+ LA  EG+E +TNTYQLIGKFL L+GPD D NKVES E C+KFW WLQA GI+++R+ IVKAIA+KVN
Sbjct:    1 MMDFIRGSVTGDITEVPGIGPAAAKKLANVEGEEGITNTYQLIGKFLMLKGPDTDTNKVESFEHCEKFWYWLQAMGISAHRSAIVKAIAQKVN 93          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.170e-33
Identity = 58/103 (56.31%), Postives = 74/103 (71.84%), Query Frame = 0
Query:   32 RRQGRNERLAEFVRSTISGEITEVPGIAERGAELLAAGEGDEVVTNTYQLIGKFLALRGPDKDDNKVESAEQCDKFWLWLQAKGINSNRTGIVKAIAEKVNTW 134
            R +  +E+LAEF+R  I+GE+TEVPGI     + LAAGEG   V NTYQLIGKFL+L+G D     +++ E CD+FW WL+  GI+S R+GIV AIAEK NTW
Sbjct:   11 RSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGISSYRSGIVNAIAEKCNTW 113          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: A0A7S2V4V0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4V0_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.090e-29
Identity = 50/96 (52.08%), Postives = 76/96 (79.17%), Query Frame = 0
Query:   38 ERLAEFVRSTISGEITEVPGIAERGAELLAAGEGDEVVTNTYQLIGKFLALRGPDKDDNKVESAEQCDKFWLWLQAKGINSNRTGIVKAIAEKVNT 133
            + LA F+R+ I+G+IT+VPGI +  A  LA+ + DE +TN++QLIGKFL ++GPD ++ +V+    C+KFW +L++KG+NS+R+GIV AIAEK+NT
Sbjct:   15 DALATFLRNPITGDITQVPGIGKAAAAALASADDDEPITNSFQLIGKFLLMKGPDTEEGEVDCVMHCNKFWYYLKSKGVNSHRSGIVHAIAEKINT 110          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: A0A6U3Z2B1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Z2B1_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.920e-29
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 0
Query:   32 RRQGRNERLAEFVRSTISGEITEVPGIAERGAELLAA-GEGD---EVVTNTYQLIGKFLALRGPDKDDNKVESAEQCDKFWLWLQAKGINSNRTGIVKAIAEKVNT 133
            R +  ++  A F R  +SGE+T+VPGI    A+ L   G+G+   + VTNTYQLIGKFL L+GPD+D NKVES E  +KFW +L+ KGI+S+R+GIV+AIAEKVNT
Sbjct:    9 RSKVSDDTFASFQRDALSGELTDVPGIGPAAAKKLGQIGDGETEFDRVTNTYQLIGKFLMLKGPDEDGNKVESVEHMEKFWWYLKQKGISSHRSGIVRAIAEKVNT 114          
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Match: A0A7S2R0A3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.210e-28
Identity = 52/103 (50.49%), Postives = 74/103 (71.84%), Query Frame = 0
Query:   32 RRQGRNERLAEFVRSTISGEITEVPGIAERGAELLAAGEGD-EVVTNTYQLIGKFLALRGPDKDDNKVESAEQCDKFWLWLQAKGINSNRTGIVKAIAEKVNT 133
            R +  +  + +F+RS I+G++TEVPGI       LA G+ + + +TNT+QLIGKFL L+GPD+DD K++  E  +KFW WL+ KGI S+R+ IVKAI EK+NT
Sbjct:   11 RSKVSDSTMTDFLRSQITGDVTEVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDDMKIDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINT 113          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11407.1236.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLB8_9PHAE1.310e-5158.50IBR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FQ44_ECTSI3.420e-4973.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LB34_ECTSI3.350e-4856.46RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LB33_ECTSI1.620e-3840.00RING-type domain-containing protein n=1 Tax=Ectoca... [more]
K0QZN8_THAOC4.330e-3560.40Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8CF00_THAPS2.930e-3462.37Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A835Z4N7_9STRA1.170e-3356.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V4V0_9STRA1.090e-2952.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U3Z2B1_9STRA2.920e-2955.66Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2R0A3_9STRA1.210e-2850.49Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002867IBR domainPFAMPF01485IBRcoord: 266..313
e-value: 1.1E-7
score: 31.9
NoneNo IPR availableGENE3D1.20.120.1750coord: 242..315
e-value: 1.2E-11
score: 46.9
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 261..314

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11407contigEcto-sp13_S_contig11407:2499..5213 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11407.1236.1mRNA_Ecto-sp13_S_contig11407.1236.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11407 2136..5213 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11407.1236.1 ID=prot_Ecto-sp13_S_contig11407.1236.1|Name=mRNA_Ecto-sp13_S_contig11407.1236.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=317bp
MYLTSPLRPVSQTKVSSIQFISPSSHELSTCRRQGRNERLAEFVRSTISG
EITEVPGIAERGAELLAAGEGDEVVTNTYQLIGKFLALRGPDKDDNKVES
AEQCDKFWLWLQAKGINSNRTGIVKAIAEKVNTWTSEPRRERARAAEASR
QYPRCILECGDDEEDLQGSWCPLGHFLCPSCTTQYVEKTLLPEGVVWWDT
INCVDPECTEHKEGASVRRCLSQTIVESINASQLEIVSMIEAEARRECDS
TSRAVDDRASEALVAQSTKPCPRCGAPSVKVDGCKHINKCRCGFEYCWDC
GKSWVRGHLSVSCATR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom