prot_Ecto-sp13_S_contig1118.1040.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1118.1040.1
Unique Nameprot_Ecto-sp13_S_contig1118.1040.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length940
Homology
BLAST of mRNA_Ecto-sp13_S_contig1118.1040.1 vs. uniprot
Match: A0A6H5JNG5_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNG5_9PHAE)

HSP 1 Score: 954 bits (2467), Expect = 0.000e+0
Identity = 802/972 (82.51%), Postives = 827/972 (85.08%), Query Frame = 0
Query:    1 RAWLYVCFKFNVRAACAGYNVPAWSGEPVLCVPRAPQRLVPMAEKEESLSSFWDYDLQPRLEPPPKRAKSSSCPLCAKKQAKLEQEQATNVELVRSIADLMRSKAEVVRDLEAARAKLRSLELHQLQHGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPSSGDTHDEELSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALETXXXXXXXXXXXXXXXXXXXXXXXXGD------------------SSHGVNRGARGPSRAAGLALGMGRKMPPGLTRPVFPGKASALPNTLSHLAERSKGVTSTTVAEKFWTALPRSSSWRMAPAPAAPGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGVLRLPHAQPATPSVAAPAAISRPNQLLEARASPPCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRSLPLGPETPTGALRSSTAASVSSNSVVPQLPAAVHRAREGESAVSLDPSCVAELGRGSSAGERWMLIPIGKDGRATTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---VSTEDCRKTVAPATPEAGSSESRGDASGXXXXXXXXXXXXXXXAATTSESKEAAACVSTAAAATEDCQMTEVSAAAGAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPARDDEDNGSYGGGDKTLRTEGPSSEGGETLLADRPTNARDGSPSSLLSKSPCASSVVCGGSPSKGKQPRVEEGEEEGGGEEGTPTRRVPDYSTCVVRHMHVLQCFLCLQYPRQPKDGRSVVFCQKCPRKACLRCQETKVSKDRTGWVPGRDTFGRYYEIPECSECQKGSDDEVPAWVEPPWMEGEGLEISEGDARRLLEKFLHWLQNHELAHFFVDE-----------TVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDV 940
            RAWLYVCF FNVRAACAGY+VPAWSG PVLCV RAP+ LVPMAEKEESLSSFWDYDLQPRLEPPPKRAKSSSCPLCAKKQAKLEQEQATNV+LVRSIADL RSKAEVV +LEAARAKLRSLE     HGGGG   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSSGDTHDE LSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXX                    SS GVNRGARGPSRAAGLA+GMGRK+ PGLTR VFPGKA  LPNT+SHLAERSKGVTSTTVAEKFW ALPRSSSWRMAPA AAP    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGVLRLPHAQ ATPS AAPAA SRPNQLLE R      XXXXXXXXXXXXXXXXXXXXXXXXXXXXX F  LPLGPE+PTG++RS+TAASVS NSV P+LPAAVH A E ESAVSLDPS VAELGRGSSAGERWML P GKDGRATTPA            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   VSTEDCRKT AP TPEA +SESRG  +         XXXXXX A TTSESK+AAACVS AA ATEDCQMT+  A AGAEA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    AVPARDDEDNGS GGGD+T+  +GP+S+            AR GSPSSLLSKSPCASSVVCGGSPSKGK+P VEEGEEEGGGEEGTPTRRVPDYSTCVVRHMHVLQCFLCLQYPRQPKDGR VVFCQKCPRKACLRCQETKV+KDRTGWVPGRDTFGRYYEIPEC+ECQKGSDDEVPAWVEPPWMEGEGLEISEGD RRLL+KFLHWLQNHELAHFFVDE           TVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDV
Sbjct:   11 RAWLYVCFLFNVRAACAGYSVPAWSGGPVLCVSRAPEGLVPMAEKEESLSSFWDYDLQPRLEPPPKRAKSSSCPLCAKKQAKLEQEQATNVDLVRSIADLTRSKAEVVGELEAARAKLRSLE-----HGGGGVPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSGDTHDEGLSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRGVNRGARGPSRAAGLAVGMGRKITPGLTRSVFPGKA--LPNTVSHLAERSKGVTSTTVAEKFWIALPRSSSWRMAPAAAAP---EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGVLRLPHAQRATPSAAAPAATSRPNQLLEPRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFWPLPLGPESPTGSIRSATAASVSLNSVPPRLPAAVHPACERESAVSLDPSWVAELGRGSSAGERWMLTPSGKDGRATTPAAAGSIPRPNEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSTEDCRKTAAPVTPEAATSESRGYVTDEDGRKTEPXXXXXXGAVTTSESKDAAACVSAAAPATEDCQMTQTLATAGAEAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEHGAVPARDDEDNGSVGGGDETMLADGPTSDXXXXXXXXXXXXARGGSPSSLLSKSPCASSVVCGGSPSKGKRPGVEEGEEEGGGEEGTPTRRVPDYSTCVVRHMHVLQCFLCLQYPRQPKDGRPVVFCQKCPRKACLRCQETKVTKDRTGWVPGRDTFGRYYEIPECNECQKGSDDEVPAWVEPPWMEGEGLEISEGDTRRLLDKFLHWLQNHELAHFFVDEVDPAEYPDYRETVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDV 972          
BLAST of mRNA_Ecto-sp13_S_contig1118.1040.1 vs. uniprot
Match: D7FI70_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI70_ECTSI)

HSP 1 Score: 525 bits (1353), Expect = 2.290e-174
Identity = 305/371 (82.21%), Postives = 315/371 (84.91%), Query Frame = 0
Query:  570 VSTEDCRKTVAPATPEAGSSESRGDASGXXXXXXXXXXXXXXXAATTSESKEAAACVSTAAAATEDCQMTEVSAAAGAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPARDDEDNGSYGGGDKTLRTEGPSSEGGETLLADRPTNARDGSPSSLLSKSPCASSVVCGGSPSKGKQPRVEEGEEEGGGEEGTPTRRVPDYSTCVVRHMHVLQCFLCLQYPRQPKDGRSVVFCQKCPRKACLRCQETKVSKDRTGWVPGRDTFGRYYEIPECSECQKGSDDEVPAWVEPPWMEGEGLEISEGDARRLLEKFLHWLQNHELAHFFVDETVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDV 940
            VSTEDC KT APATPEAG+SESR D++     XXXXXXXXX  AA T ESKEAAACVS A   TEDC+MTE SAAAGAE                X    XXXXXXXXXXXXXXXXXAV ARDDEDNGSYGGGD+TL  E PSS           T+ARDGSPSSLLSKSPCASSVVCGGSPSKGK+PRVEEGEEEG G+EGTPTRRVPDYSTCVVRHMHVLQCFLCLQYPRQPKDGRSVVFCQKCPRKACLRCQETK+SKDRTGWVPGRDTFGRY+EIPECSECQKGSDDEVPAWVEPPWMEGEG EISEGD  RLLEKFLHWLQNHELAHFFVDETVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDV
Sbjct:   62 VSTEDCLKTAAPATPEAGTSESRRDSTDEDGRXXXXXXXXXVGAAATGESKEAAACVSAAXXXTEDCRMTEASAAAGAE----------------XAPADXXXXXXXXXXXXXXXXXAVAARDDEDNGSYGGGDETLLAERPSSXXXXXXXXXXXTSARDGSPSSLLSKSPCASSVVCGGSPSKGKRPRVEEGEEEGEGDEGTPTRRVPDYSTCVVRHMHVLQCFLCLQYPRQPKDGRSVVFCQKCPRKACLRCQETKLSKDRTGWVPGRDTFGRYFEIPECSECQKGSDDEVPAWVEPPWMEGEGREISEGDTSRLLEKFLHWLQNHELAHFFVDETVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDV 416          
BLAST of mRNA_Ecto-sp13_S_contig1118.1040.1 vs. uniprot
Match: D7FI69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI69_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 3.100e-43
Identity = 129/140 (92.14%), Postives = 130/140 (92.86%), Query Frame = 0
Query:   42 MAEKEESLSSFWDYDLQPRLEPPPKRAKSSSCPLCAKKQAKLEQEQATNVELVRSIADLMRSKAEVVRDLEAARAKLRSLELHQLQHGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFPSSGDTHDEELSG 181
            MAEKEESLSSFWDYDLQPRLEPP KRAKSSSCPLCAKKQAKLEQEQATNVELVRSIADL RSKAEVVR+LEAARAKLRSLEL QLQHGG  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  F  SGDTHDE LSG
Sbjct:    1 MAEKEESLSSFWDYDLQPRLEPPTKRAKSSSCPLCAKKQAKLEQEQATNVELVRSIADLSRSKAEVVRELEAARAKLRSLELQQLQHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCPFLPSGDTHDEGLSG 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1118.1040.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNG5_9PHAE0.000e+082.51Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FI70_ECTSI2.290e-17482.21Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FI69_ECTSI3.100e-4392.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 97..124
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 906..940
score: 9.104
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 882..931

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1118contigEcto-sp13_S_contig1118:11767..19025 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1118.1040.1mRNA_Ecto-sp13_S_contig1118.1040.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1118 11767..19025 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1118.1040.1 ID=prot_Ecto-sp13_S_contig1118.1040.1|Name=mRNA_Ecto-sp13_S_contig1118.1040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=940bp
RAWLYVCFKFNVRAACAGYNVPAWSGEPVLCVPRAPQRLVPMAEKEESLS
SFWDYDLQPRLEPPPKRAKSSSCPLCAKKQAKLEQEQATNVELVRSIADL
MRSKAEVVRDLEAARAKLRSLELHQLQHGGGGVPQPAPPDPDAYGSGGGV
AARPSTPSPPPPPPPCPFPSSGDTHDEELSGGGGGGGGVAAAASARAAMA
GVAAAARRSSNSDEGAAAVAAAAASAAATDALETSGASSRSSESGVSTRG
SPQQQQQGGDSSHGVNRGARGPSRAAGLALGMGRKMPPGLTRPVFPGKAS
ALPNTLSHLAERSKGVTSTTVAEKFWTALPRSSSWRMAPAPAAPGNAGAA
AGAARQKQQRRQRRPAQQQRQHQQQQQVGVLRLPHAQPATPSVAAPAAIS
RPNQLLEARASPPCASSRRTSSCPPQQQASSAAYPSRRSQAPPPPFRSLP
LGPETPTGALRSSTAASVSSNSVVPQLPAAVHRAREGESAVSLDPSCVAE
LGRGSSAGERWMLIPIGKDGRATTPAAAGSSPPPDEAAASPPEVRAAVAA
TSESREEAAAVISAAAAAAVSTEDCRKTVAPATPEAGSSESRGDASGEDG
RETEAPAAAEAGAATTSESKEAAACVSTAAAATEDCQMTEVSAAAGAEAA
AAAGVQAAAAAGVHVSAADGVHVSAADGVRTSEEDGAVPARDDEDNGSYG
GGDKTLRTEGPSSEGGETLLADRPTNARDGSPSSLLSKSPCASSVVCGGS
PSKGKQPRVEEGEEEGGGEEGTPTRRVPDYSTCVVRHMHVLQCFLCLQYP
RQPKDGRSVVFCQKCPRKACLRCQETKVSKDRTGWVPGRDTFGRYYEIPE
CSECQKGSDDEVPAWVEPPWMEGEGLEISEGDARRLLEKFLHWLQNHELA
HFFVDETVKKPMNFTRMRERLRAGEYDSRRAGLNSFMEDV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf