prot_Ecto-sp13_S_contig11174.1033.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11174.1033.1
Unique Nameprot_Ecto-sp13_S_contig11174.1033.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length426
Homology
BLAST of mRNA_Ecto-sp13_S_contig11174.1033.1 vs. uniprot
Match: D7FVI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI5_ECTSI)

HSP 1 Score: 562 bits (1449), Expect = 2.330e-196
Identity = 298/369 (80.76%), Postives = 312/369 (84.55%), Query Frame = 0
Query:   34 EKVARKSGPGSAAKGRGGGGRGGVGSLEGLSADEVERRLIAAGILRGDGAEIDFEEDDGGEAGVYNEIEVSDGEEACRTLEERLGFDEEGIAYLRSKYPPLRGELWYRREPASGSSKTGKKFLDVYFVEETLPVLLDLLLGEEGEGGGIGLDRKQARGPADSSNSEQFWGDVREMLATTPSLVGMDVSDAKDVAGYLRSELGLNGKGQLASALAACPPMLMYHTWDNLRMK-----------VSYYREALAWTNEDVAAMLAKYPNLLSIKMENDVIEVINYLRTEVGLQPSTXXXXXXXXXQILEVRPKRLKAVVRYLWKVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIG 391
            ++V R+SGPG AAKG       GVGSLEGLSADEVE+RLIAAGILRGDGAEIDFEEDDGG AGVYNEIEVSDGEEAC+ LEERLGFDEEGIA+LRSKYPPLRGELWYRREPASG SKTGKKFLDVYFVEETLP LLDLLLGEEGEGGG+GLDRKQ                VREML TTPSLVGMDVSDAKDVAGYLRSELGL+GKGQLASALA CPPMLMYHTWDNLRMK           VSYYRE+LAWTNEDVAAMLA+YPNLLSIKMENDVIEVI+YLRTEVGLQP T         Q+LEVRPKRLKAVVRY WKVLEIPRSGIAVLLSQHPR CCLEAEANLAPLRQFFERELFVE ++  G
Sbjct:  127 DEVVRESGPGGAAKGXXXXXXDGVGSLEGLSADEVEQRLIAAGILRGDGAEIDFEEDDGGGAGVYNEIEVSDGEEACQILEERLGFDEEGIAHLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGGVGLDRKQ----------------VREMLTTTPSLVGMDVSDAKDVAGYLRSELGLSGKGQLASALAGCPPMLMYHTWDNLRMKYDNNDDGDDDQVSYYRESLAWTNEDVAAMLAEYPNLLSIKMENDVIEVIDYLRTEVGLQPLTVSGMVREFPQVLEVRPKRLKAVVRYFWKVLEIPRSGIAVLLSQHPRTCCLEAEANLAPLRQFFERELFVEASTVNG 479          
BLAST of mRNA_Ecto-sp13_S_contig11174.1033.1 vs. uniprot
Match: A0A6H5JYV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYV1_9PHAE)

HSP 1 Score: 503 bits (1294), Expect = 2.880e-171
Identity = 295/410 (71.95%), Postives = 300/410 (73.17%), Query Frame = 0
Query:   28 GGDRPVEKVARKSGPGSAAKGRGGGGRGGVGSLEGLSADEVERRLIAAGILRGDGAEIDFEEDDGGEAGVYNEIEVSDGEEACRTLEERLGFDEEGIAYLRSKYPPLRGELWYRREPASGSSKTGKKFLDVYFVEETLPVLLDLLLGEEGEGGGIGLDRKQARGPADSSNSEQFWGDVREMLATTPSLVGMDVSDAKDVAGYLRSELGLNGKGQLASALAACPPMLMYHTWDNLRMKVSYYREALAWTNEDVAAMLAKYPNLLSIKMENDVIEVINYLRTEVGLQPSTXXXXXXXXXQILEVRPKRLKAVVRY------------------LWKVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKV 419
            GGDRPVEKVARKSGPG AAK          GSLEGLSADEVERRLIAAGILRGDGAEIDF+EDD GEAGVYNEIEVSDGEEACR LEERLGFDEEGI YLRSKYPPLRGELWYRREPASG SKTGKKFLDVYFVEETLP LLDLLLGEEGEGGGIGLDRKQARGPADSS+SEQFWGDV                DA                                         VSYYREALAWT+EDVAAMLA+YPNLLSIKMENDVIEVI+            XXXXXXXXX   EVRPKRLKAVVR                   L  VLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRK 
Sbjct:  197 GGDRPVEKVARKSGPGGAAKXXXXXXXXXAGSLEGLSADEVERRLIAAGILRGDGAEIDFDEDDDGEAGVYNEIEVSDGEEACRILEERLGFDEEGIGYLRSKYPPLRGELWYRREPASGGSKTGKKFLDVYFVEETLPDLLDLLLGEEGEGGGIGLDRKQARGPADSSHSEQFWGDV----------------DAD----------------------------------------VSYYREALAWTSEDVAAMLAEYPNLLSIKMENDVIEVIDXXXXXXXXXXXXXXXXXXXXXXXXEVRPKRLKAVVRKKGTELELQAFESKEVLGTLSSVLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFRKA 550          
BLAST of mRNA_Ecto-sp13_S_contig11174.1033.1 vs. uniprot
Match: A0A835YN67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN67_9STRA)

HSP 1 Score: 152 bits (385), Expect = 5.450e-38
Identity = 108/353 (30.59%), Postives = 159/353 (45.04%), Query Frame = 0
Query:  106 GEEACRTLEERLGFDEEGIAYLRSKYPPLRGELWYRREPASGSSKTGKKFLDVYFVEETLPVLLDLLLGEEGEGGGIGLDRKQARGPADSSNSEQFWG--DVREMLATTPSLVGMDVSDAKDVAGYLRSELGLNGKGQLASALAACPPMLMYHTWDNLRMKVSYYREALAWTNEDVAAMLAKYPNLLSIKMENDVIEVINYLRTEVGLQPSTXXXXXXXXXQ---ILEVRPKRLKAVVRYLWK------------------------------------VLEIPRSGIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRLLFQDVDTQLVPRAEEFR 417
            G EA R L E +G     +A L  ++ PLRGE+WYRR       + GKK LDVYF+E+TLP L++LL   E                      E  W   ++    A  PSL+G + ++      Y+R      G G+L  AL+ACP +L+Y    NLR K +Y    L  T   +  ++ KYP +  +    +    I  L   +    +T         +   + E + KR+KA++ YL K                                    VL++       L+  HPR   +EAE +LAPLR FFE +L + DT RIG +V K P++LF D++T+L P+A + R
Sbjct:   62 GAEAQRFLIEDVGLAPAAVAALAERFAPLRGEMWYRR-------RNGKKVLDVYFLEDTLPDLVELLEAPE----------------------ELGWSQEEMAAAFAVVPSLLGREAAEVAASLRYVREXXXXEG-GELRGALSACPSLLLYDARTNLRAKHAYLTRHLGLTPAQLRELMLKYPRMFDVAFTGEGKSSIASLDVLLDSGMTTHMACQLVVAEPELVAEAKGKRVKALMHYLQKWRRLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLKLEPEVATRLVCSHPRLLGMEAEKDLAPLRHFFEYDLCITDTRRIGSIVAKLPQILFMDLETELRPKAADIR 384          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11174.1033.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FVI5_ECTSI2.330e-19680.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYV1_9PHAE2.880e-17171.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YN67_9STRA5.450e-3830.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 243..275
e-value: 890.0
score: 4.3
coord: 353..384
e-value: 2700.0
score: 0.5
coord: 391..423
e-value: 31.0
score: 13.5
coord: 317..348
e-value: 7.1
score: 15.6
coord: 280..312
e-value: 0.025
score: 23.7
coord: 206..237
e-value: 140.0
score: 10.5
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 239..370
e-value: 1.8E-13
score: 50.1
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10coord: 288..423
e-value: 2.4E-12
score: 48.6
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 206..315

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11174contigEcto-sp13_S_contig11174:264..5535 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11174.1033.1mRNA_Ecto-sp13_S_contig11174.1033.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11174 264..5535 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11174.1033.1 ID=prot_Ecto-sp13_S_contig11174.1033.1|Name=mRNA_Ecto-sp13_S_contig11174.1033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=426bp
SADPAADAAAAAIAADDGDGSGDGESAGGDRPVEKVARKSGPGSAAKGRG
GGGRGGVGSLEGLSADEVERRLIAAGILRGDGAEIDFEEDDGGEAGVYNE
IEVSDGEEACRTLEERLGFDEEGIAYLRSKYPPLRGELWYRREPASGSSK
TGKKFLDVYFVEETLPVLLDLLLGEEGEGGGIGLDRKQARGPADSSNSEQ
FWGDVREMLATTPSLVGMDVSDAKDVAGYLRSELGLNGKGQLASALAACP
PMLMYHTWDNLRMKVSYYREALAWTNEDVAAMLAKYPNLLSIKMENDVIE
VINYLRTEVGLQPSTVSGMVREFPQILEVRPKRLKAVVRYLWKVLEIPRS
GIAVLLSQHPRACCLEAEANLAPLRQFFERELFVEDTSRIGHLVYKFPRL
LFQDVDTQLVPRAEEFRKVSERSRP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf