prot_Ecto-sp13_S_contig11085.947.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11085.947.1
Unique Nameprot_Ecto-sp13_S_contig11085.947.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length209
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: D8LT06_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT06_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 4.590e-111
Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = 0 
Query:   37 GEEEVAPPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDGKSSTATSGSFGSYGDGAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLREAQKAAGKR 208
            GEEEVAPPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTD K STATSGSFG+YGDGAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLREAQKAAGKR
Sbjct:  110 GEEEVAPPPDVEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDSKGSTATSGSFGTYGDGAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLREAQKAAGKR 281
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: A0A565CPV0_9BRAS (RRM domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565CPV0_9BRAS)

HSP 1 Score: 95.1 bits (235), Expect = 3.090e-21
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 0 
Query:   45 PDVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRF 131
            PD  G  +E     L+VGNL  R++EA ++K+F+P+GK++ E F +H  GP+ GEPRG+ FV+YS  ++A  A+  +HGR   GRPL VRF
Sbjct:    2 PDTGGFVDEKNESRLYVGNLDLRINEAALLKMFSPYGKIISEDFLWHTRGPKKGEPRGYAFVQYSRKEEAEVAVEKMHGRLACGRPLVVRF 92
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: A0A169WBX9_DAUCS (RRM domain-containing protein n=3 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A169WBX9_DAUCS)

HSP 1 Score: 95.5 bits (236), Expect = 4.430e-21
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 0 
Query:   55 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMT----VEGKGRMD 141
            L++GNL +R++EA +IK+F+PFG +V E F +H  GP+ GEPRG+ FV+Y  V++A  A   +HG+ +YGRPL VR  +    V+G G  D
Sbjct:   45 LYIGNLDFRITEAALIKMFSPFGTIVSEDFLWHTRGPKRGEPRGYAFVQYRTVEEAKLAKEKVHGKLVYGRPLVVRLASEKDLVDGAGSSD 135
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: A0A803MKS2_CHEQI (RRM domain-containing protein n=4 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803MKS2_CHEQI)

HSP 1 Score: 94.4 bits (233), Expect = 8.100e-21
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 0 
Query:   46 DVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVR 130
            D+ G+ NET    ++VGN+ +R+SEA ++K+F+PFGK+  E F  H  GP+ GEPRGF FV+YS  ++A  A   +HGR   GRPL VR
Sbjct:   12 DLNGMSNETSDRRIYVGNIDHRISEATLLKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKEEARLAKEKMHGRLACGRPLVVR 100
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: UPI00109F2394 (probable RNA-binding protein 18 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI00109F2394)

HSP 1 Score: 93.2 bits (230), Expect = 1.990e-20
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 0 
Query:   47 VEGIPNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRF 131
            V+      L+VGNL  R++EA +IK+F+PFGK++ E F +H  GP+ GEPRG+ F++YS+ ++A  A   ++GR  YGRPL VRF
Sbjct:    2 VDDTTESRLYVGNLDQRITEANVIKIFSPFGKIISEDFLWHTRGPKKGEPRGYVFIQYSSKEEAQLAKTEMNGRLAYGRPLVVRF 86
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: A0A4D8Y803_SALSN (RRM domain-containing protein n=4 Tax=Salvia TaxID=21880 RepID=A0A4D8Y803_SALSN)

HSP 1 Score: 92.8 bits (229), Expect = 2.940e-20
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 0 
Query:   55 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVE-GKGRMDYSTTDGKSSTATSGSFG 158
            L+VGNL  R++EA +IK+F+PFGK+V E + +H  GP+ GEPRG+ F+++S+ ++A +A   +HGR   GRPL VR  + +   G +++S T   S +  SG  G
Sbjct:   15 LYVGNLDLRITEAALIKMFSPFGKIVSEDYLWHTCGPKRGEPRGYAFIQFSSKEEAIRAKEEMHGRMACGRPLVVRLASEKYPDGAVNHSKTSEGSRSLLSGGSG 119
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: UPI000CECE4CA (probable RNA-binding protein 18 isoform X1 n=2 Tax=Morus notabilis TaxID=981085 RepID=UPI000CECE4CA)

HSP 1 Score: 92.4 bits (228), Expect = 3.210e-20
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 0 
Query:   55 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVR 130
            L++GNL  R++EA +IK+F+PFGK+V E F +H  GP+ GEPRGF FV+YS  ++A  A   +HGR   GRPL VR
Sbjct:   15 LYIGNLDLRITEAALIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFVQYSTKEEARLAKEKMHGRLACGRPLVVR 90
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: A0A2G5E0G3_AQUCA (RRM domain-containing protein n=2 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5E0G3_AQUCA)

HSP 1 Score: 92.4 bits (228), Expect = 3.380e-20
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 0 
Query:   55 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMT----VEGKGRMDYSTTDGKSSTATSGSFGSYGDGAKI 166
            L++GNL  R++EAV+IK+F+PFGK+V E F +H  GP+ GEPRGF F++++  ++A  A   +HG+   GRPL VRF      VE +     +  +G  S+    S G     AKI
Sbjct:   15 LYIGNLDQRITEAVLIKMFSPFGKIVSEDFLWHTRGPKRGEPRGFAFIQFNTKEEAELAKEKMHGKFACGRPLVVRFACEKYLVESEANPSKTIGEGNKSSFVGNSSGQMSRSAKI 130
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: A0A7C9DAW6_OPUST (RRM domain-containing protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DAW6_OPUST)

HSP 1 Score: 92.4 bits (228), Expect = 3.380e-20
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 0 
Query:   46 DVEGIPNET----LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMT----VEGKGRMDYSTTDGKSSTATSGSFGSYGDGAKI 166
            D+ G+ +E+    L+VGN+ +R+SEA +IK+F+PFGK+  E F  H  GP+ GEPRGF FV+YS   +A  A   +HGR   GRPL VR  +    VE    +  ++     ST++S S G     AKI
Sbjct:    2 DLNGLSDESSERRLYVGNIDHRISEATLIKMFSPFGKIESEDFLLHTRGPKRGEPRGFAFVQYSTKWEARLAKEKMHGRLACGRPLVVRLASEKSAVEAAENLSKTSVVTNRSTSSSSSSGPMSRSAKI 130
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BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Match: A0A0A0KJM9_CUCSA (RRM domain-containing protein n=4 Tax=Cucumis TaxID=3655 RepID=A0A0A0KJM9_CUCSA)

HSP 1 Score: 93.6 bits (231), Expect = 3.680e-20
Identity = 45/99 (45.45%), Postives = 67/99 (67.68%), Query Frame = 0 
Query:   55 LFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDGKSSTAT 153
            L++GNL  R++EA +IKLF+PFGK++ E F +H  GP+ GEPRGF F+EYS+ ++A  A   +HG+   GRPL VR  +     ++  +TT+  S TA+
Sbjct:   47 LYIGNLDLRITEAALIKLFSPFGKIISEDFLWHTRGPKRGEPRGFAFIEYSSKEEAKLAKEKMHGKLACGRPLVVRLASE----KLMTNTTNDTSRTAS 141
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11085.947.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT06_ECTSI4.590e-11198.26RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A565CPV0_9BRAS3.090e-2147.25RRM domain-containing protein n=1 Tax=Arabis nemor... [more]
A0A169WBX9_DAUCS4.430e-2147.25RRM domain-containing protein n=3 Tax=Daucus carot... [more]
A0A803MKS2_CHEQI8.100e-2149.44RRM domain-containing protein n=4 Tax=Chenopodium ... [more]
UPI00109F23941.990e-2048.24probable RNA-binding protein 18 n=1 Tax=Dendrobium... [more]
A0A4D8Y803_SALSN2.940e-2042.86RRM domain-containing protein n=4 Tax=Salvia TaxID... [more]
UPI000CECE4CA3.210e-2053.95probable RNA-binding protein 18 isoform X1 n=2 Tax... [more]
A0A2G5E0G3_AQUCA3.380e-2041.38RRM domain-containing protein n=2 Tax=Thalictroide... [more]
A0A7C9DAW6_OPUST3.380e-2041.86RRM domain-containing protein n=1 Tax=Opuntia stre... [more]
A0A0A0KJM9_CUCSA3.680e-2045.45RRM domain-containing protein n=4 Tax=Cucumis TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 54..130
e-value: 1.6E-7
score: 41.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 54..130
e-value: 1.3E-24
score: 97.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 55..128
e-value: 2.3E-17
score: 62.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 53..134
score: 17.609
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..141
e-value: 1.3E-25
score: 92.2
NoneNo IPR availablePANTHERPTHR21245:SF2RNA-BINDING PROTEIN 18-RELATEDcoord: 30..148
NoneNo IPR availablePANTHERPTHR21245FAMILY NOT NAMEDcoord: 30..148
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 44..161

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11085contigEcto-sp13_S_contig11085:588..3577 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11085.947.1mRNA_Ecto-sp13_S_contig11085.947.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11085 2..3676 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11085.947.1 ID=prot_Ecto-sp13_S_contig11085.947.1|Name=mRNA_Ecto-sp13_S_contig11085.947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=209bp
MSSSSSSSRSGSSSAAGAGAGGAKGGAGPGKGAAAAGEEEVAPPPDVEGI
PNETLFVGNLSYRVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFC
FVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKGRMDYSTTDGKSS
TATSGSFGSYGDGAKIPPTPGAGGEAGAAAGVTKLSLDKKVALLKLKLRE
AQKAAGKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003954RRM_dom_euk
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf