prot_Ecto-sp13_S_contig110.884.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig110.884.1
Unique Nameprot_Ecto-sp13_S_contig110.884.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length717
Homology
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BLAST of mRNA_Ecto-sp13_S_contig110.884.1 vs. uniprot
Match: D7FJH7_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJH7_ECTSI)

HSP 1 Score: 741 bits (1913), Expect = 2.100e-259
Identity = 586/692 (84.68%), Postives = 596/692 (86.13%), Query Frame = 0 
Query:   89 MTTVATPDQRPTERRTTSGEAGVTVDTLEGELQQQQRRRRQHDSVAGVSAECRLRRELKKLGNLRQPQNVLELLAAAKGRGDPLSLRVFNAAVTAVAPCEEGCKFALRLLILMQEERIAPDRFTLTAIVASCLRCQKWDAAHGVLEEMELQGMKPLDLRPGRLTTAPGEAGEARDGVLRLLERLRSADLGPEEGLRPRDQLRKGSGSGGGEFTVRDFRQGRVKSVVKATSGDGGKGARPSENNSRGTFRHVGATAASSPA----------------------------------------------------------------AADGDDKVGVSLAAETPPGEKVFLSELKAAANTKSWERAINLLDGMREAGYAPHPGAYACAIRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSLLLQMCSAPGVSTNMSSFRAVMDAYCRAGDWALALRLLEDARRYQLKPNTADLRTMVEACGKADQHERALSLLEEMRSEGMNLRRTGEKLWWVFNTCRDKKVKERAWVLMEVEQMRERVRLRAERNAQKTAPEEEAAAAAVPLRCTATTPTV 716
            MTTVATPDQRPTERRTTSG A VTVD L+GELQQQ+RRRRQHDSVAGVSAECRLRREL+KLGNLRQPQNVLELLAAAKGRGDPLSLRVFNAA+TAVAPCEEGCKFALRLLILMQEERIAPDRFTLTAIVASCLRCQKWD AHGVLE+MELQGM+PLDLRP RLTTAPGEAGEARD V RLLERLRSADLGPEEGLRP DQLRKG      +FTVRDFRQ RVKSVV+ TSG GGKGARPSENNSRGTFRHVG TAASSPA                                                                AADGDDKVGV L AETPPGEK FLSELKAAANTKSWERA+NLLDGMREAGYAPHPGAYACAIR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SLLLQMCSAPGVSTNMSSFRA MDAYCRAGDWA ALRLLEDARRYQLKPNTADLRTMVEACGKA+QHERALSLLEEMRSEGMNLRRTGEKLWWVFNTCRDKKVKERAWVLMEVEQ RERVRLRAERNAQK A EE  AAAA PLR TATTPTV
Sbjct:    1 MTTVATPDQRPTERRTTSGVADVTVDKLDGELQQQRRRRRQHDSVAGVSAECRLRRELRKLGNLRQPQNVLELLAAAKGRGDPLSLRVFNAAITAVAPCEEGCKFALRLLILMQEERIAPDRFTLTAIVASCLRCQKWDVAHGVLEKMELQGMRPLDLRPSRLTTAPGEAGEARDRVRRLLERLRSADLGPEEGLRPPDQLRKGGXXXXXDFTVRDFRQRRVKSVVRVTSGKGGKGARPSENNSRGTFRHVGTTAASSPAGSAVLVEVPPKALSSFRMENCKFQSTSCRRFSENILPPLREAYLKETSKNLTSSPTFSNAVASSAADGDDKVGVLLTAETPPGEKFFLSELKAAANTKSWERALNLLDGMREAGYAPHPGAYACAIRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLLLQMCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKPNTADLRTMVEACGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVFNTCRDKKVKERAWVLMEVEQTRERVRLRAERNAQKAAAEESEAAAAAPLRRTATTPTV 692
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig110.884.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJH7_ECTSI2.100e-25984.68PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 113..133
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 443..646
coord: 374..436
coord: 194..245
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 28..716
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..27
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..27
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 8.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.56
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 475..506
e-value: 5.0E-6
score: 24.4
coord: 581..614
e-value: 3.5E-5
score: 21.7
coord: 212..243
e-value: 0.0023
score: 16.0
coord: 406..437
e-value: 3.1E-7
score: 28.2
coord: 510..542
e-value: 8.0E-6
score: 23.7
coord: 619..645
e-value: 1.5E-4
score: 19.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 212..240
e-value: 1.0
score: 9.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 613..647
score: 9.416
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 437..471
score: 6.358
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 367..401
score: 7.498
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 472..506
score: 11.619
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 578..612
score: 10.852
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 10.315
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 542..572
score: 6.051
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 173..208
score: 5.678
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 402..436
score: 11.126
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 507..541
score: 11.159
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 359..501
e-value: 6.4E-29
score: 103.3
coord: 138..283
e-value: 2.4E-13
score: 52.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 502..704
e-value: 1.4E-32
score: 115.5
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 526..643
e-value: 2.9E-11
score: 43.1
coord: 361..478
e-value: 1.7E-8
score: 34.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig110contigEcto-sp13_S_contig110:19045..25205 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig110.884.1mRNA_Ecto-sp13_S_contig110.884.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig110 19045..26129 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig110.884.1 ID=prot_Ecto-sp13_S_contig110.884.1|Name=mRNA_Ecto-sp13_S_contig110.884.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=717bp
MPRRNRKGFTGAVPLSFVAIPAVGALACGLGSSAAPSCALLHAPSRRSMI
DSQLLSSRRFGERNRVMDEYPSVGNRRHRRHRDCSAAQMTTVATPDQRPT
ERRTTSGEAGVTVDTLEGELQQQQRRRRQHDSVAGVSAECRLRRELKKLG
NLRQPQNVLELLAAAKGRGDPLSLRVFNAAVTAVAPCEEGCKFALRLLIL
MQEERIAPDRFTLTAIVASCLRCQKWDAAHGVLEEMELQGMKPLDLRPGR
LTTAPGEAGEARDGVLRLLERLRSADLGPEEGLRPRDQLRKGSGSGGGEF
TVRDFRQGRVKSVVKATSGDGGKGARPSENNSRGTFRHVGATAASSPAAA
DGDDKVGVSLAAETPPGEKVFLSELKAAANTKSWERAINLLDGMREAGYA
PHPGAYACAIRACGKAGKWEHSLALMDEMRSSGVEPGEGCNVMALKACAD
AGLWEKTLGMLKDMRASGVNRSESTFVVAMKACGDAGRWEEALAVMDNMR
RDGIPPMETTYTTAMKACGSVGKWEQALKLLDEMKGIGIAPTEQCYTAAI
RACAKADKARIASSLLLQMCSAPGVSTNMSSFRAVMDAYCRAGDWALALR
LLEDARRYQLKPNTADLRTMVEACGKADQHERALSLLEEMRSEGMNLRRT
GEKLWWVFNTCRDKKVKERAWVLMEVEQMRERVRLRAERNAQKTAPEEEA
AAAAVPLRCTATTPTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long