prot_Ecto-sp13_S_contig1098.856.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1098.856.1
Unique Nameprot_Ecto-sp13_S_contig1098.856.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length458
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1098.856.1 vs. uniprot
Match: A0A6H5KR97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR97_9PHAE)

HSP 1 Score: 401 bits (1031), Expect = 1.700e-133
Identity = 229/266 (86.09%), Postives = 231/266 (86.84%), Query Frame = 0 
Query:    1 MDYSHVDEGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFPTGAAGTIGPPTTGGGGSGGTGSRKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQLMRMLLTVGSGAEGGAGPAGVPQQQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVPAGPLLVHIRGSKEFLTYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 266
            MD  H D+GSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFPTGAAGTIGPPTT GGGSGGTGS KSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQL+RMLLTVG    GGAG AG PQQ G                     XXXXXXXXXXXXX G PAGPLLVHIRGSKEFLTYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN
Sbjct:    1 MDNWHADDGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFPTGAAGTIGPPTTEGGGSGGTGSSKSDVQRIKLGVLLGKRPVADALSRFLTLRDVFKMGASCRQLVRMLLTVG----GGAGAAGEPQQLGAAAVGVVKGSNGGGAAAEVGTXXXXXXXXXXXXXXGAPAGPLLVHIRGSKEFLTYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 262
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BLAST of mRNA_Ecto-sp13_S_contig1098.856.1 vs. uniprot
Match: D8LEE5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEE5_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 9.210e-31
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 
Query:  204 MMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 266
            MMAVSIVLDYHDSIDGPIP+FLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN
Sbjct:    1 MMAVSIVLDYHDSIDGPIPSFLGGGGGVNTVEWLDLGRSNLTGSIPENLGTLPNLRKLYLAGN 63
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BLAST of mRNA_Ecto-sp13_S_contig1098.856.1 vs. uniprot
Match: A0A836CHX9_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.750e-11
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 0 
Query:  175 PLLVHIRGSKEFLTYFRALEQNAAWTQQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSN 243
            PL  HIRG  EF+ +FRA E   AW   R+  +SI+LDY DS+ GPIP F+G    V ++ WLDLGRS+
Sbjct:   29 PLTPHIRGRNEFVAFFRAREVGIAWATDRIQPLSIILDYRDSLAGPIPQFIGQ---VKSLVWLDLGRSD 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1098.856.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KR97_9PHAE1.700e-13386.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEE5_ECTSI9.210e-3198.41Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A836CHX9_9STRA2.750e-1152.17Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 255..279
e-value: 37.0
score: 8.6
coord: 375..399
e-value: 2.5
score: 17.1
coord: 303..326
e-value: 76.0
score: 6.1
coord: 327..351
e-value: 16.0
score: 11.6
IPR001611Leucine-rich repeatPFAMPF00560LRR_1coord: 257..276
e-value: 2.0
score: 9.3
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 281..340
e-value: 2.1E-9
score: 37.0
coord: 355..412
e-value: 8.9E-7
score: 28.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 344..450
e-value: 7.8E-30
score: 105.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 228..343
e-value: 1.9E-36
score: 127.3
NoneNo IPR availablePANTHERPTHR45752FAMILY NOT NAMEDcoord: 283..452
coord: 237..412
coord: 237..350
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 231..439

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1098contigEcto-sp13_S_contig1098:3242..11574 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1098.856.1mRNA_Ecto-sp13_S_contig1098.856.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1098 2063..11962 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1098.856.1 ID=prot_Ecto-sp13_S_contig1098.856.1|Name=mRNA_Ecto-sp13_S_contig1098.856.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=458bp
MDYSHVDEGSEAQNIIRQAEAPPDSPFRPRFRRRSGEIAIPAGFPTGAAG
TIGPPTTGGGGSGGTGSRKSDVQRIKLGVLLGKRPVADALSRFLTLRDVF
KMGASCRQLMRMLLTVGSGAEGGAGPAGVPQQQGAAAVGVVKGSNGGAAA
AVMGAGGAAAAGVVAAAAAGVPAGPLLVHIRGSKEFLTYFRALEQNAAWT
QQRMMAVSIVLDYHDSIDGPIPAFLGGGGGVNTVEWLDLGRSNLTGSIPE
NLGTLPNLRKLYLAGNQLVGPIPSSLGDIVTLSDLSLAGNELSGAIPDSF
GNLTLLRYLSLRDNKLSGAIPESLGNLVNLEELWLNANQIEGAIPASLGN
MATARKVFLNNNCIEGTLPATLGNLSSLRILSLRHNRLTGTIPPELGRLS
QLKTLYMEKNELEGNIPDTLANLASLKELNLLGNKFQGKAQTRNLLIGRL
PNCVVYV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf