prot_Ecto-sp13_S_contig10904.806.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10904.806.1
Unique Nameprot_Ecto-sp13_S_contig10904.806.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length579
Homology
BLAST of mRNA_Ecto-sp13_S_contig10904.806.1 vs. uniprot
Match: D8LKJ2_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ2_ECTSI)

HSP 1 Score: 829 bits (2141), Expect = 5.290e-298
Identity = 452/581 (77.80%), Postives = 470/581 (80.90%), Query Frame = 0
Query:    1 MDVIYEGQHLVKQLGVLFRNIVSPASTPLLPLYSDRPVASAQPSSSPGHLFHQWRQQHQEEQQQRQALDSSMSDHPPCGSRVRPLSITTKISERLVSLSNIVCHKSETLLPLHSSTPSHPCPTFXXXXXXXXXXXXXXXXXXXXXXXXXXEQERHPLFDRPFRLDRLPEDVLPSALAFLPARELSGMRRVSQRFLQEVDHHGDALWGSLCRCDFPSMASSPMAAAGVREDKHAYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKQLYNYTWGDKDPRKSSRTINMTNGRGDTPSVSGRIGSTSGSFPGGSNXXXXXXGSGAVIGLLSDLVTVPDPRIALALSFKCRFVLSRVVVVNDNFSSSIRRA----ERVEFLSLSAFRQENPSVLPRPPPTGSNDTAXXXXXXXXXXRRTDFGGGCRERVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKHLAVFETSEQAEVVRARMANQRLFYCALDRPLGQGHQSPAALRMLPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDVDDAVARQEKIACLARSSLEALERGRQM 577
            MDV+YE QHLVKQLGVLFRNIV PASTPLLPLYSDRPVA+AQPSSSPGHLFHQ             AL SSMSDHPPCGSR++PLSITTKIS+RLVSLSNIVC KSE LLPL SSTPSHPC TF                          +QERHPLFDRPF LD+LPEDVLPS LAFLPARELSGMRR SQRFLQEVDHHGDALW SLCRC+FPSMASSP AAAGVREDKH+YLSHHHQQYVSNVMHRANDQVLNLRSNRHLRK+LYNYTWG+KDP+KSSRTINMT+GRG                     XXXXXX   AVIGLLSDLVTVPDPRIA ALSFKCRFVLSRVVVVNDN SSSIRR+    ERVEFLSLSA RQE+PSVLPRPPPT SNDTA          RRTD GGGCRE VEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFK LAVFETSEQAEVVRARMANQRLFYCALDRP GQGH SPAALR+LPHISHWGFQQAP RVGG        H VGSTSFGEEDVDDAV RQE+IACLA SSLEAL+ GRQM
Sbjct:    1 MDVLYESQHLVKQLGVLFRNIVYPASTPLLPLYSDRPVATAQPSSSPGHLFHQRXXXXXXXXXXXXALHSSMSDHPPCGSRIQPLSITTKISDRLVSLSNIVCQKSEPLLPLQSSTPSHPCSTFSSFPAATATPVFFRSPYAHHPELVQRQQERHPLFDRPFPLDQLPEDVLPSVLAFLPARELSGMRRASQRFLQEVDHHGDALWRSLCRCEFPSMASSPTAAAGVREDKHSYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQKSSRTINMTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVIGLLSDLVTVPDPRIARALSFKCRFVLSRVVVVNDNVSSSIRRSGLYTERVEFLSLSALRQESPSVLPRPPPTVSNDTAAVATASRSGGRRTDNGGGCREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFETSEQAEVVRARMANQRLFYCALDRPRGQGHPSPAALRVLPHISHWGFQQAPGRVGGXXXXXXXXHVVGSTSFGEEDVDDAVERQERIACLASSSLEALKCGRQM 581          
BLAST of mRNA_Ecto-sp13_S_contig10904.806.1 vs. uniprot
Match: A0A6H5KC80_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC80_9PHAE)

HSP 1 Score: 400 bits (1029), Expect = 3.780e-133
Identity = 224/326 (68.71%), Postives = 244/326 (74.85%), Query Frame = 0
Query:    1 MDVIYEGQHLVKQLGVLFRNIVSPASTPLLPLYSDRPVASAQPSSSPGHLFHQWRQQHQEEQQQRQALDSSMSDHPPCGSRVRPLSITTKISERLVSLSNIVCHKSETLLPLHSSTPSHPCPTFXXXXXXXXXXXXXXXXXXXXXXXXXXEQERHPLFDRPFRLDRLPEDVLPSALAFLPARELSGMRRVSQRFLQEVDHHGDALWGSLCRCDFPSMASSPMAAAGV----------REDKHAYLSHHHQQYVSNVM----HRANDQVLNLRSNRHLRKQLYNYTWGDKDPRKSSRTINMTNGRGDTPSVSGRIGSTSGSFPGGSN 312
            M+V+Y+GQHLVKQLGVLFRNIV PAST LLP YSDRPVA+AQPSSSPGHLFHQ             ALDSSMSDHPPCGSRV+PLSI TKISERLVSLSNIVC KS+ LLPLHSSTPSHPCPTF                          ++ER+PLFDRPF LDRLPEDVLPS LAFLPA ELSGMRRVSQ FLQEVDHHG+ALW SLCRCDFPSMASSP AAAGV            +  A L     + ++ +     HRANDQVLNLRSNRHLRK+LYNYTWG+KDP++SSRTINMT+GRG T SVSGRIGSTSGS PG SN
Sbjct:    1 MNVLYQGQHLVKQLGVLFRNIVYPASTSLLPPYSDRPVAAAQPSSSPGHLFHQRXXXXXXXXXXXPALDSSMSDHPPCGSRVQPLSIKTKISERLVSLSNIVCQKSKPLLPLHSSTPSHPCPTFSPFPAVTATPVFFPSPYAHHRELVQRQEERYPLFDRPFPLDRLPEDVLPSVLAFLPAGELSGMRRVSQTFLQEVDHHGEALWDSLCRCDFPSMASSPTAAAGVWGYSRRPVPFAINSSARLRTTPLKSLAAIRQQRHHRANDQVLNLRSNRHLRKRLYNYTWGNKDPQQSSRTINMTSGRGTTASVSGRIGSTSGSAPGWSN 326          
BLAST of mRNA_Ecto-sp13_S_contig10904.806.1 vs. uniprot
Match: A0A6H5KB01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB01_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 2.850e-97
Identity = 155/169 (91.72%), Postives = 158/169 (93.49%), Query Frame = 0
Query:  410 RTDFGGGCRERVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKHLAVFETSEQAEVVRARMANQRLFYCALDRPLGQGHQSPAALRMLPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDVDDAVARQEKIACLARSSLEALERGRQML 578
            RTD GGG RE VEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFK LAVF+TSEQAEVVRARMANQR FYCALDRP GQGH SPA LR+LPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDVD AVARQEKIACLARSSLEAL+ GR ML
Sbjct:    2 RTDDGGGRREEVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKDLAVFKTSEQAEVVRARMANQRRFYCALDRPRGQGHPSPAVLRVLPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDVDAAVARQEKIACLARSSLEALKCGRHML 170          
BLAST of mRNA_Ecto-sp13_S_contig10904.806.1 vs. uniprot
Match: A0A6H5L1J4_9PHAE (F-box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J4_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 1.420e-92
Identity = 211/434 (48.62%), Postives = 254/434 (58.53%), Query Frame = 0
Query:  152 QERHPLFDRPFRLDRLPEDVLPSALAFLPARELSGMRRVSQRFLQEVDHHGDALWGSLCRCDFPSMASSPMAAAGVREDKHAYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKQLYNYTWGDKDPRKSSRTINMTNGRGDTPSVSGRIGSTSGSFPGGSNXXXXXXGSGAVIGLLSDLVTVPDPRIALALSFKCRFVLSRVVVVNDNFSSSIRR----AERVEFLSLSAFRQENPS-----VLPR--PPPTGSNDTAXXXXXXXXXXRRTDFGGGCRERVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKHLAVFETSEQAEVVRARMANQRLFYCALDRPLGQGHQSPAALRMLPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDVDDAVARQEKIACLARSSLEALERG 574
            ++R PL+  PF L  +PEDV  + L+FLPA ELS +RR S+ FL   D H D LWG L RCDFPS+A+    AA     +       HQQYV NVM RA D+V NLR+N  LR+ L ++TW    PR ++ T         + ++   I +T G    G + XXXXX    VIGLLSDLVTVPDPRIA ALS+K R  LS VVV ND      RR       V FL LS    +NP+     +LP   PPP    +              T+ G G  E    GA+LLP APE+PAPAGFLGYAVRLL+LRP HE LRWT L A+F+ LAVFET+EQAEVVRAR+ ++RLFYCALD P  Q    P   R +PHISHWGF    +   G GGG G     G      E V DA+ RQE+IAC ARSSL  L+ G
Sbjct:   67 KQRQPLWS-PFPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLHTADRHADVLWGRLNRCDFPSVAAPTDPAA-----QETNCLSPHQQYVKNVMRRAIDEVGNLRANHRLRESLDSFTWPIDWPRGNATT---------SGTIYSAISNTFGGGIDGRSSXXXXXXXXXVIGLLSDLVTVPDPRIARALSYKRRAALSTVVVDNDKVLFDFRRRGLYTGPVNFLPLSTLVVDNPTPLAPLLLPLLLPPPRRIGNVPAG----------TEDGDGREE----GADLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEVVRARVPDRRLFYCALDHPGAQDEPCPIGGRSMPHISHWGFHGL-LADSGLGGGEG--EMPGVRDRAGETVGDALERQERIACFARSSLAFLQYG 468          
BLAST of mRNA_Ecto-sp13_S_contig10904.806.1 vs. uniprot
Match: D8LKK0_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKK0_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 1.260e-52
Identity = 158/427 (37.00%), Postives = 183/427 (42.86%), Query Frame = 0
Query:  153 ERHPLFDRPFRLDRLPEDVLPSALAFLPARELSGMRRVSQRFLQEVDHHGDALWGSLCRCDFPSMASSPMAAAGVREDKHAYLSHHHQQYVSNVMHRANDQVLNLRSNRHLRKQLYNYTWGDKDPRKSSRTINMTNGRGDTPSVSGRIGSTSGSFPGGSNXXXXXXGSGAVIGLLSDLVTVPDPRIALALSFKCRFVLSRVVVVNDNFSSSIRR----AERVEFLSLSAFRQENPSVLPRPPPTGSNDTAXXXXXXXXXXRRTDFGGGCRERVEAGANLLPLAPETPAPAGFLGYAVRLLQLRPGHESLRWTVLLAVFKHLAVFETSEQAEVVRARMANQRLFYCALDRPLGQGHQSPAALRMLPHISHWGFQQAPVRVGGGGGGRGGEHAV-GSTSFGEEDVDDAVARQEKIACLARSSLEALERG 574
            +R PL+   F L  +PEDV  + L+FLPA ELS +RR S+ FLQ  D H D LWG L RC+FPS+++    AA                           Q  N  S                                                                          P  R         R  LS VVV ND      RR       V FL LS    +NP+ L    P                   T+ G G  E    GANLLP APE+PAPAGFLGYAVRLL+LRP HE LRWT L A+F+ LAVFET+EQAE VRAR+ ++RLFYCALD P  Q    P   R LPHISHWGF       G GGG    E  V G      E V DA+ RQE+ AC ARSSL  L+ G
Sbjct:   67 QRQPLWSS-FPLGLIPEDVRLTVLSFLPAGELSSIRRASRDFLQTADRHADVLWGRLNRCEFPSVSAPTGPAA---------------------------QETNCLS--------------------------------------------------------------------------PHQR---------RAALSTVVVDNDKVLFDFRRRGFYTGPVNFLPLSTLVMDNPTPLA---PLLLPLLLPPQRRIGIVPAGTEDGDGREE----GANLLPRAPESPAPAGFLGYAVRLLRLRPEHEPLRWTALFALFRDLAVFETTEQAEAVRARVPDRRLFYCALDHPGAQDEPCPPGGRSLPHISHWGFHGVLADSGLGGG----EGEVPGVRDRAGETVGDALERQERTACFARSSLAFLQYG 371          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10904.806.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LKJ2_ECTSI5.290e-29877.80F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KC80_9PHAE3.780e-13368.71F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KB01_9PHAE2.850e-9791.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1J4_9PHAE1.420e-9248.62F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LKK0_ECTSI1.260e-5237.00F-box domain-containing protein n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPROSITEPS50181FBOXcoord: 161..209
score: 12.12
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 160..221

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10904contigEcto-sp13_S_contig10904:504..3243 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10904.806.1mRNA_Ecto-sp13_S_contig10904.806.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10904 246..3428 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10904.806.1 ID=prot_Ecto-sp13_S_contig10904.806.1|Name=mRNA_Ecto-sp13_S_contig10904.806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=579bp
MDVIYEGQHLVKQLGVLFRNIVSPASTPLLPLYSDRPVASAQPSSSPGHL
FHQWRQQHQEEQQQRQALDSSMSDHPPCGSRVRPLSITTKISERLVSLSN
IVCHKSETLLPLHSSTPSHPCPTFSPFPTATATPVFFRSPYVHHQELVHR
EQERHPLFDRPFRLDRLPEDVLPSALAFLPARELSGMRRVSQRFLQEVDH
HGDALWGSLCRCDFPSMASSPMAAAGVREDKHAYLSHHHQQYVSNVMHRA
NDQVLNLRSNRHLRKQLYNYTWGDKDPRKSSRTINMTNGRGDTPSVSGRI
GSTSGSFPGGSNGGNGGDGSGAVIGLLSDLVTVPDPRIALALSFKCRFVL
SRVVVVNDNFSSSIRRAERVEFLSLSAFRQENPSVLPRPPPTGSNDTAAV
ATASSSGGRRTDFGGGCRERVEAGANLLPLAPETPAPAGFLGYAVRLLQL
RPGHESLRWTVLLAVFKHLAVFETSEQAEVVRARMANQRLFYCALDRPLG
QGHQSPAALRMLPHISHWGFQQAPVRVGGGGGGRGGEHAVGSTSFGEEDV
DDAVARQEKIACLARSSLEALERGRQML*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf