prot_Ecto-sp13_S_contig10448.428.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig10448.428.1
Unique Name	prot_Ecto-sp13_S_contig10448.428.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	537

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10448.428.1 vs. uniprot
Match: D7FK13_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK13_ECTSI)

HSP 1 Score: 713 bits (1840), Expect = 1.180e-253
Identity = 487/537 (90.69%), Postives = 498/537 (92.74%), Query Frame = 0

Query:    1 MLRLAYLACLYLWYEFCSWTNIKHRASEGQICVGESSGEHTRADE-DRGAATKASPTYALPADLVRRERQGQYRTHGTTGSSRHAAAKRNSASPFEVCPSPAGQDSMGSPFTDAGGNSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWATSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLMATAFQVMQVDPGFLNGELDYIREKLEVSTLSLGRFGLKGSLPPALGDVLQLRELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLVEGHXXXXXXXXXXXXXXXXXXXXXXXXXXAAXXXXSKLERLYLDRXXXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLATGQLRGMEDEERLGQLFPNCEISVSSWTNEWG 536
            MLRLAYLACLYLWY+FCSWTNIKHRAS+GQ CVGE SGEHTR DE D GA+ +AS   ALPADLV+R+RQGQYRTHGTTGSSRHA AKRNSASPFEVCPSPAGQDSMGSPFTDAGGNSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITW TSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRL+ATAFQVMQVDPGFLNGEL YIREKLEVS L+LGRFGLKGSLPP+LGDVLQ    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXX  XXXX          XXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   NLATGQLRG+EDEERLGQLFPNCEISV+SWTNEWG
Sbjct:    1 MLRLAYLACLYLWYDFCSWTNIKHRASQGQTCVGELSGEHTRVDEEDHGASAQASLASALPADLVKRKRQGQYRTHGTTGSSRHAGAKRNSASPFEVCPSPAGQDSMGSPFTDAGGNSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWVTSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLVNRFGAENAAMPTERNSKRLLATAFQVMQVDPGFLNGELGYIREKLEVSRLNLGRFGLKGSLPPSLGDVLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQL-NLATGQLRGVEDEERLGQLFPNCEISVASWTNEWG 536

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BLAST of mRNA_Ecto-sp13_S_contig10448.428.1 vs. uniprot
Match: D7G1J8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J8_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.690e-43
Identity = 111/274 (40.51%), Postives = 158/274 (57.66%), Query Frame = 0

Query:  113 AGGNSEDL----RRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWT-WCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWATSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAASLAVLV--NRFGAENAAMPTERNSKRLMATAFQVMQVDPGFLNGELDYIREKL-EVSTLSLGRFGLKGSLPPALGDVLQLR 378
            +GG+S  L    R+ LKR  I  ++TP+ +L+S V DLDL  DW FL+ GL     L+  +A    +VGTVM+ L T EF  +S+    W  +G  LS LQHV LGWQLL NV +ED+PQ +IT  T PTSV GVLN+  +G +L AK+  G++++    +S+Q +MID DP V ++L   R +A++ A  A  L  L   NR              ++  A  FQV+Q+DP F+ G+L+Y+R  L   S L +    L G +P  +GD+  LR
Sbjct:  139 SGGHSWFLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWTFLKYGLAGQGFLIRKLALFFAIVGTVMWALSTTEFSLMSKLKNMW--KGNPLSRLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIVHGYSSQRAPSLSTQFKMIDQDPAVTRNLFKLRDEAKKKAKAAEKLVYLAWANRCS----------TGEQKAAAVFQVLQMDPTFVGGDLEYMRADLFSGSRLYITASSLTGPIPSQVGDMTILR 400

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BLAST of mRNA_Ecto-sp13_S_contig10448.428.1 vs. uniprot
Match: A0A6H5JNU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNU7_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.720e-29
Identity = 79/192 (41.15%), Postives = 109/192 (56.77%), Query Frame = 0

Query:  113 AGGNSEDL----RRTLKRSAIWEKVTPLTVLTSVVSDLDLFADWYFLQEGLEDAQE-----------LVADVAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVPLGWQLLLNVVVEDIPQLVITWATSPTSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNAR 289
            +GG+S  L    R+ LKR  I  ++TP+ +L+S V DLDL  DW FL+ GL    E           L+  +A    +VGTVM+ L T EF  +S+             LQHV LGWQLL NV +ED+PQ +IT  T PTSV GVLN+  +G +L AK+  G +++    +S+Q +MID DP V ++L   R
Sbjct:  189 SGGHSWYLSAKDRQVLKRRTILSRITPIVLLSSFVGDLDLITDWMFLKYGLAGQGENTKAEGCLQRFLIRKLALFFAIVGTVMWALSTTEFSLMSKL------KNMWKVLQHVGLGWQLLANVFLEDVPQFIITVITRPTSVTGVLNLCASGLSLCAKIIHGISSQRAPSLSTQFKMIDQDPAVTRNLFKLR 374

[Close]

BLAST of mRNA_Ecto-sp13_S_contig10448.428.1 vs. uniprot
Match: D7FK10_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK10_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.430e-8
Identity = 62/186 (33.33%), Postives = 90/186 (48.39%), Query Frame = 0

Query:  124 LKRSAIWEKVTPLTVLTSVVSDLDLFADW--YFLQEGLEDAQ-ELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRRGRALSPLQHVP--LGWQLLLNVVVEDIPQLVITWATSP-TSVAGVLNIATAGFALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQH-------LLNARHKAEELA 296
            LK     + V+    L+S+ +D+D+  DW  YF  E   DA  E + + +   T+ GT+ +VLL       ++   W R G              W LL NVV+ED+PQL IT  T+  T+VAG +NIA + F+ LAK AE  A+  +  +     M  T  G V+        LL  + +AE LA
Sbjct:   41 LKARLTRDTVSSSLALSSIAADIDVVTDWFFYFSDEVQNDASFEGLKEASLFFTLFGTLTWVLLA------TDCPGWLRNGACPDTTGRAGRYFSWPLL-NVVLEDLPQLAITGMTTGFTTVAGAMNIAASVFSFLAKAAEALASLEEDDLPRMFHMAATAKGRVESVIELKNALLGKKQEAEVLA 219

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10448.428.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10448.428.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
D7FK13_ECTSI	1.180e-253	90.69	Hypothetical leucine rich repeat protein n=2 Tax=E...	[more]
D7G1J8_ECTSI	1.690e-43	40.51	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
A0A6H5JNU7_9PHAE	1.720e-29	41.15	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FK10_ECTSI	1.430e-8	33.33	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 447..471 e-value: 7.8 score: 14.2 coord: 423..446 e-value: 46.0 score: 7.8 coord: 374..397 e-value: 23.0 score: 10.3 coord: 398..422 e-value: 24.0 score: 10.1
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 424..484 e-value: 2.8E-10 score: 39.8 coord: 372..411 e-value: 3.1E-7 score: 30.0
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 337..529 e-value: 1.9E-45 score: 157.2
None	No IPR available	PANTHER	PTHR27008	FAMILY NOT NAMED	coord: 396..510
None	No IPR available	PANTHER	PTHR27008:SF356		coord: 350..465
None	No IPR available	PANTHER	PTHR27008	FAMILY NOT NAMED	coord: 350..465
None	No IPR available	PANTHER	PTHR27008:SF356		coord: 396..510
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 4..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 18..536
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..3
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..17
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..19 score: 0.533
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 350..511

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10448	contig	Ecto-sp13_S_contig10448:1404..5744 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10448.428.1	mRNA_Ecto-sp13_S_contig10448.428.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig10448 706..5792 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig10448.428.1 ID=prot_Ecto-sp13_S_contig10448.428.1|Name=mRNA_Ecto-sp13_S_contig10448.428.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=537bp
MLRLAYLACLYLWYEFCSWTNIKHRASEGQICVGESSGEHTRADEDRGAA
TKASPTYALPADLVRRERQGQYRTHGTTGSSRHAAAKRNSASPFEVCPSP
AGQDSMGSPFTDAGGNSEDLRRTLKRSAIWEKVTPLTVLTSVVSDLDLFA
DWYFLQEGLEDAQELVADVAFVLTVVGTVMYVLLTLEFHPVSEAWTWCRR
GRALSPLQHVPLGWQLLLNVVVEDIPQLVITWATSPTSVAGVLNIATAGF
ALLAKMAEGFATRTDLPMSSQLRMIDTDPGVVQHLLNARHKAEELAANAA
SLAVLVNRFGAENAAMPTERNSKRLMATAFQVMQVDPGFLNGELDYIREK
LEVSTLSLGRFGLKGSLPPALGDVLQLRELDLNGNALGGVIPGSFGDLTA
LTTLNLGGNRLVEGHIPPELGGLRELRELNLQDNDLTGTIPAALGNLSKL
ERLYLDRNKLGGALPRELGTLRALRVLYLGGNLITGETPRELVALADLQQ
LNLATGQLRGMEDEERLGQLFPNCEISVSSWTNEWG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf