mRNA_Ecto-sp13_S_contig9998.21643.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9998.21643.1 vs. uniprot
Match: D7FGT9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGT9_ECTSI) HSP 1 Score: 952 bits (2462), Expect = 0.000e+0 Identity = 520/599 (86.81%), Postives = 543/599 (90.65%), Query Frame = 1 Query: 1 ALENVYLLPVSVLLDVGRFPSHYDASRKKQLVAASEISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLDEKATGGSADGGKGRASSAEGGNAANEGFGYVWLSFSCTSANRMRPAFQTHLDNFLTAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGWCCVELLCTLHLEVPTTMHVALKDALSEAVTNCQLSSPERRGGEGGGEGXXXXXXXGAEVEPDNLPPSSVFELISAPDEGTASQISGERVGSHNERSQGSGHQCSSAAAARRPHSSVGGCMTRAVQAASRRLSSCPADAXXXXXXXXSPMSPPAETPPSGERESAASVNGPDPAVHNTPDGGAFPEHREQPTEESAHIANLIWSSGAEAHLDSITRLVADILKSLDDEVSTDMKEGIAPGGEGNTRDVISGERIPEDSKAGLLLARVLNLGMEKQDVDEDGRGGEGGEANACPLLRELYEKLGNFSSSHDRLDAVKTLLLAGCYFEGVRASSSHCSRGPSPEHAKLADGARGLPPSPSSLGVKDRDRECERENDMSGRGRVSGGGDGDRNXXXXXXXXXXXXXXXXXKTSPSSRGGRAEAAGKAAPLLAGSVPSCHVS 1797
ALENVYLLPVSVLLDVGRFPSHYDASR+KQLVAAS+ISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFL+ KA GGS DGG+ ++A+EGFGYVWLSFSCTS+NRMRPAFQTHLDN LTAWCFCDHALVLPETVTRAAEGF YTDVEGYVERGWCCV+LLC LHL+VP TMHVALKDALSEAVTNCQLSSPERRG EGG XXXXXX GAEVEP+NLPPSSVFELISA +EGTASQ+SGE VGSH+ERSQGSGHQCS AA ARRPHSS G CMTRAVQAASRRLSSCPADA SPM PPAE PP GER+SAASV+GP PAVH+ PDGG FPEHREQPTEESAHIANLIWSSGAEAHLDSITRLVADILKSLDDEVSTDMKEG+A GG GNTRDVI GE IPEDSKAGLLLARVLNLGM+KQDV+EDG GGEGGEA ACPLLRELYEKLGNFSSSHDRLDAVKTLLLAGCYFEGVRASS HCSRGPSPEHAKLADG RGLPP+PSSLG KDRDRECER+NDM GRGR+SGGGD XXXXXXXXXXXXXXXXXK SPSSRGGRAEAAGKAAPLLAGSVPSCHVS
Sbjct: 543 ALENVYLLPVSVLLDVGRFPSHYDASRRKQLVAASDISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLEGKAMGGSTDGGEXXXXXXXXXDSADEGFGYVWLSFSCTSSNRMRPAFQTHLDNVLTAWCFCDHALVLPETVTRAAEGFTYTDVEGYVERGWCCVKLLCALHLDVPMTMHVALKDALSEAVTNCQLSSPERRGVEGG---XXXXXXGGAEVEPENLPPSSVFELISASEEGTASQVSGESVGSHDERSQGSGHQCSGAATARRPHSSAGVCMTRAVQAASRRLSSCPADAGAAGAAC-SPMPPPAEIPPGGERDSAASVSGPGPAVHSPPDGGIFPEHREQPTEESAHIANLIWSSGAEAHLDSITRLVADILKSLDDEVSTDMKEGLATGGGGNTRDVIPGEGIPEDSKAGLLLARVLNLGMDKQDVEEDGGGGEGGEAKACPLLRELYEKLGNFSSSHDRLDAVKTLLLAGCYFEGVRASSGHCSRGPSPEHAKLADGRRGLPPAPSSLGAKDRDRECERDNDMGGRGRISGGGDXXXXXXXXXXXXXXXXXXXXXKPSPSSRGGRAEAAGKAAPLLAGSVPSCHVS 1137
BLAST of mRNA_Ecto-sp13_S_contig9998.21643.1 vs. uniprot
Match: A0A6H5KTJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTJ5_9PHAE) HSP 1 Score: 950 bits (2456), Expect = 0.000e+0 Identity = 517/599 (86.31%), Postives = 540/599 (90.15%), Query Frame = 1 Query: 1 ALENVYLLPVSVLLDVGRFPSHYDASRKKQLVAASEISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLDEKATGGSADGGKGRASSAEGGNAANEGFGYVWLSFSCTSANRMRPAFQTHLDNFLTAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGWCCVELLCTLHLEVPTTMHVALKDALSEAVTNCQLSSPERRGGEGGGEGXXXXXXXGAEVEPDNLPPSSVFELISAPDEGTASQISGERVGSHNERSQGSGHQCSSAAAARRPHSSVGGCMTRAVQAASRRLSSCPADAXXXXXXXXSPMSPPAETPPSGERESAASVNGPDPAVHNTPDGGAFPEHREQPTEESAHIANLIWSSGAEAHLDSITRLVADILKSLDDEVSTDMKEGIAPGGEGNTRDVISGERIPEDSKAGLLLARVLNLGMEKQDVDEDGRGGEGGEANACPLLRELYEKLGNFSSSHDRLDAVKTLLLAGCYFEGVRASSSHCSRGPSPEHAKLADGARGLPPSPSSLGVKDRDRECERENDMSGRGRVSGGGDGDRNXXXXXXXXXXXXXXXXXKTSPSSRGGRAEAAGKAAPLLAGSVPSCHVS 1797
ALENVYLLPVSVLLDVGRFPSHYDASRKKQLVAAS+ISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLDEKAT GSADGGKGR SAEGG++A+EGFGYVWLSFSCTS+NRMRPAFQTHLDN LTAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGWCCVELLC LHLEVPTT+HVALKDALSEAVTNCQLSSP+RRGGEGGG GAE+EPDNLPPSSVFELISA +EGTASQ+SGE VGS++ERSQGSGHQCS AAAARRPHSSVG CMTRAVQAA+RRLSSCPADA SPM PPAETPPSGER+SAA V+G PAVH+TPDGG FPEHR QPTEESAHIANLIWSSGAEAHLDSITRLVADILKSLD+EVSTDM EG+A GG GNTRDV+SGE IPEDSKAGLLLARVLNLGMEKQDV+EDG G EGGEA ACPLLRELYEKLGNFSSSHDRLDAVKTLLLAGCY EGVRASS H SRGPSP HAKLADG RGLPP+PSSLG KDR+RECER+NDMSGRGRVSGGGD XXXXXXXXXXXXX K SPSSRGGRAEAA PLLA SVPSCHVS
Sbjct: 289 ALENVYLLPVSVLLDVGRFPSHYDASRKKQLVAASDISPQSQVLLVTHPWESPGNPDPSGKQFSALRRFLDEKATAGSADGGKGRGGSAEGGDSADEGFGYVWLSFSCTSSNRMRPAFQTHLDNVLTAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGWCCVELLCALHLEVPTTIHVALKDALSEAVTNCQLSSPQRRGGEGGG--------GGAEIEPDNLPPSSVFELISASEEGTASQVSGESVGSYDERSQGSGHQCSGAAAARRPHSSVGMCMTRAVQAAARRLSSCPADAAAASAAC-SPMPPPAETPPSGERDSAAFVSGLGPAVHSTPDGGIFPEHRAQPTEESAHIANLIWSSGAEAHLDSITRLVADILKSLDEEVSTDM-EGLATGGGGNTRDVLSGEGIPEDSKAGLLLARVLNLGMEKQDVEEDG-GREGGEAKACPLLRELYEKLGNFSSSHDRLDAVKTLLLAGCYCEGVRASSEHRSRGPSPAHAKLADGGRGLPPAPSSLGAKDRERECERDNDMSGRGRVSGGGDXXXXXXXXXXXXXXXXXLRGGKPSPSSRGGRAEAA----PLLAASVPSCHVS 872
BLAST of mRNA_Ecto-sp13_S_contig9998.21643.1 vs. uniprot
Match: A0A7S3YCQ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCQ4_HETAK) HSP 1 Score: 73.6 bits (179), Expect = 3.370e-11 Identity = 53/175 (30.29%), Postives = 76/175 (43.43%), Query Frame = 1 Query: 1 ALENVYLLPVSVLLDVGRFPSHYDASRKKQLVAASEISPQSQVLLVTHPWESPG-NPDPSGKQFSALRRFLDEKATGGSADGGKGRASSAEGGNAANEGFGYVWLSFSCT---SANRMRPAFQTHLDNFLTAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGWCCVELLCTL 513
AL V L + GRF +A + V A + + VLLV+HPWE+ G +PDP +QFS +R+F+ E+A G YVWL ++C S ++ A + F A H LV+P A G A TD+ ++ R W +E L L
Sbjct: 2 ALPRVLLARARDVAAAGRFLPFAEACARGWHVPADLAARGAGVLLVSHPWEARGGHPDPHNRQFSVVRKFIQERAE--------------------ELGIQYVWLDYTCLPEPSKDKAGGARALAVRAFPAALLLATHCLVVPALQRDPASGLAVTDLRRHLRRAWGRLEALACL 156
BLAST of mRNA_Ecto-sp13_S_contig9998.21643.1 vs. uniprot
Match: A0A7S2V1E8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1E8_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.370e-9 Identity = 50/166 (30.12%), Postives = 76/166 (45.78%), Query Frame = 1 Query: 4 LENVYLLPVSVLLDVGRFPSHYDASRKKQLVAASEISPQSQVLLVTHPWESPGNP----DPSGKQFSALRRFLDEKATGGSADGGKGRASSAEGGNAANEGFGYVWLSFSCTSANRMRPAFQTHLDNFL-TAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGW 486
L + L+PV+ LL+ G+FPS+ SR++ S +SP++ VL + H WE N DPSG QF ++ FL + KG+ F +VW+ SC + + +T + L A H LV+P + TD+EG + RGW
Sbjct: 168 LNQLLLVPVTKLLEAGKFPSYETCSRQRWHETGSAVSPRAGVLYIVHRWEEGENRKNGGDPSGSQFELVKSFLALEEN-------KGK-------------FDHVWIDHSCLDQDTVGSQDRTAMLACLPAALLLASHILVVPSLLN------GLTDLEGLLWRGW 307 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9998.21643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9998.21643.1 >prot_Ecto-sp13_S_contig9998.21643.1 ID=prot_Ecto-sp13_S_contig9998.21643.1|Name=mRNA_Ecto-sp13_S_contig9998.21643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=487bp MRPAFQTHLDNFLTAWCFCDHALVLPETVTRAAEGFAYTDVEGYVERGWCback to top mRNA from alignment at Ecto-sp13_S_contig9998:1543..5960- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9998.21643.1 ID=mRNA_Ecto-sp13_S_contig9998.21643.1|Name=mRNA_Ecto-sp13_S_contig9998.21643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4418bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9998:1543..5960- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9998:1543..5960- >mRNA_Ecto-sp13_S_contig9998.21643.1 ID=mRNA_Ecto-sp13_S_contig9998.21643.1|Name=mRNA_Ecto-sp13_S_contig9998.21643.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1461bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9998:1543..5960- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |