mRNA_Ecto-sp13_S_contig9997.21642.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9997.21642.1
Unique NamemRNA_Ecto-sp13_S_contig9997.21642.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: D8LKN6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN6_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 2.390e-43
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 KSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGGP 225
            KSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGGP
Sbjct:   63 KSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGGP 137
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: A0A6H5JGK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGK5_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.090e-35
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:   37 MHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGGP 225
            MHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGGP
Sbjct:    1 MHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGGP 63
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: A0A835ZBP3_9STRA (HSP20-like chaperone n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 4.540e-25
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGGRGGP 225
            STWKVLP SIQMHI+K  +D  FW RL KDK+LEK  + IDWNK+VDEDE++   GFDMSAL GGS FGG GGP
Sbjct:   65 STWKVLPASIQMHIIKADKDADFWTRLPKDKALEKNGISIDWNKYVDEDEEDDAGGFDMSALTGGSGFGGYGGP 138
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: A0A4D9CXJ1_9STRA (CS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXJ1_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.800e-22
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQF 207
            S WKVLPRSIQ+ + KE ED  FWERLLKDK LEKTNVK+DW+++VDEDE+E    FDMS L+GG  F
Sbjct:   63 SVWKVLPRSIQILLKKEEEDTGFWERLLKDKQLEKTNVKVDWDRYVDEDEEESNPNFDMSNLEGGMDF 130
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: A0A7S0AJF6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AJF6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.410e-21
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKET----EDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGG 213
            ST+KVLPRSIQMH+MK T    ED+ FW RLLKDK+LEK  VKIDW+++VDEDE++   GFD SAL+GG   GG
Sbjct:   66 STYKVLPRSIQMHVMKATSKDDEDEEFWPRLLKDKALEKNQVKIDWDRYVDEDEEDEAGGFDTSALEGGMGMGG 139
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: A0A7S1DAL4_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAL4_CYCTE)

HSP 1 Score: 94.7 bits (234), Expect = 3.450e-21
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMK--ETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGG 213
            ST+KVLPRS+QMH+MK  +++D  FW RLLKDK+LEK  VKIDW+++VDEDE+E   GFDMSAL GG   GG
Sbjct:   91 STYKVLPRSVQMHVMKRDKSDDSEFWPRLLKDKALEKNQVKIDWDRYVDEDEEEDAGGFDMSALQGGMGMGG 162
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: A0A7S0C9D9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9D9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 7.520e-21
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGG 213
            S++KVLPRSIQM++MK+  D+ FW RLLKDK+LEK  VKIDW+++VDEDE++   GFD S LDGG   GG
Sbjct:   67 SSYKVLPRSIQMNVMKDNADEEFWTRLLKDKALEKNRVKIDWDRYVDEDEEDEAGGFDTSNLDGGQGMGG 136
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: A0A7S1XZ43_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1XZ43_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.150e-20
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGG 213
            ST+KVLPRS+QMHI+K+ +++ FW RLLKDK+LEK  VKIDW+++VDEDE+E  EGFD S LDGG   GG
Sbjct:   95 STYKVLPRSVQMHILKKEKEEEFWSRLLKDKALEKNQVKIDWDRYVDEDEEE--EGFDTSNLDGGMGMGG 162
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: B7FPF4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPF4_PHATC)

HSP 1 Score: 92.4 bits (228), Expect = 1.980e-20
Identity = 48/71 (67.61%), Postives = 58/71 (81.69%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMKETED-DAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFGG 213
            ST+KVLPRSIQMH+MK  ED + FW RLLKDK+LEK  VKIDW+++VDEDE++  EGFD SAL+GG   GG
Sbjct:   68 STYKVLPRSIQMHVMKHEEDREEFWPRLLKDKALEKNQVKIDWDRYVDEDEED--EGFDTSALEGGMGMGG 136
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BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Match: A0A1E7FT42_9STRA (HSP20-like chaperone n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FT42_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.280e-20
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:    4 STWKVLPRSIQMHIMK-ETEDDAFWERLLKDKSLEKTNVKIDWNKFVDEDEDEGGEGFDMSALDGGSQFG 210
            ST+ VLPRS+QMHI+K E E++ FW RLLKDK+LEK  +KIDW+++VDEDE+E  EGFDMS +DGGS  G
Sbjct:   64 STYNVLPRSVQMHILKDEKEEEEFWTRLLKDKALEKNQIKIDWDRYVDEDEEE--EGFDMSNMDGGSGMG 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9997.21642.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKN6_ECTSI2.390e-43100.00CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JGK5_9PHAE4.090e-35100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZBP3_9STRA4.540e-2568.92HSP20-like chaperone n=1 Tax=Tribonema minus TaxID... [more]
A0A4D9CXJ1_9STRA1.800e-2267.65CS domain-containing protein n=3 Tax=Monodopsidace... [more]
A0A7S0AJF6_9STRA1.410e-2164.86Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S1DAL4_CYCTE3.450e-2165.28Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S0C9D9_9STRA7.520e-2162.86Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7S1XZ43_9STRA1.150e-2065.71Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
B7FPF4_PHATC1.980e-2067.61Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1E7FT42_9STRA2.280e-2065.71HSP20-like chaperone n=1 Tax=Fragilariopsis cylind... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9997contigEcto-sp13_S_contig9997:1946..3429 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score154.1
Seed ortholog evalue5.3e-35
Seed eggNOG ortholog2880.D8LKN6
Preferred nameSBA1
Model size450
KEGG rclassRC00672
KEGG koko:K10858,ko:K13127,ko:K15730
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,ko03430,ko03460,map00590,map01100,map03430,map03460
KEGG ModuleM00295
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006457,GO:0007275,GO:0008150,GO:0009506,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010449,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010648,GO:0010817,GO:0016020,GO:0019219,GO:0019222,GO:0022622,GO:0023051,GO:0023057,GO:0030054,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032879,GO:0033043,GO:0033044,GO:0035266,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0048364,GO:0048507,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051052,GO:0051054,GO:0051087,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051338,GO:0051972,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071944,GO:0080036,GO:0080037,GO:0080090,GO:0099402,GO:1904356,GO:1904358,GO:2000012,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Exons3
EggNOG free text desc.prostaglandin-E synthase activity
EggNOG OGsKOG3158@1,KOG3158@2759
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-03_000990.1
EC5.3.99.3
Cds size450
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464258.820881-CDS-Ecto-sp13_S_contig9997:1945..22291681464258.820881-CDS-Ecto-sp13_S_contig9997:1945..2229Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9997 1946..2229 -
1681464258.8376627-CDS-Ecto-sp13_S_contig9997:2730..28061681464258.8376627-CDS-Ecto-sp13_S_contig9997:2730..2806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9997 2731..2806 -
1681464258.8487005-CDS-Ecto-sp13_S_contig9997:3339..34291681464258.8487005-CDS-Ecto-sp13_S_contig9997:3339..3429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9997 3340..3429 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9997.21642.1prot_Ecto-sp13_S_contig9997.21642.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9997 1946..3429 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9997.21642.1

>prot_Ecto-sp13_S_contig9997.21642.1 ID=prot_Ecto-sp13_S_contig9997.21642.1|Name=mRNA_Ecto-sp13_S_contig9997.21642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=150bp
KSTWKVLPRSIQMHIMKETEDDAFWERLLKDKSLEKTNVKIDWNKFVDED
EDEGGEGFDMSALDGGSQFGGRGGPPGGMGGMGGMGGMGGMGGMGGMGGM
GGMGGMGGMGGGEGGMPAGMAEMMAKMQAGEMGGMGGGGDDDDDDDDDDE
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mRNA from alignment at Ecto-sp13_S_contig9997:1946..3429-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9997.21642.1 ID=mRNA_Ecto-sp13_S_contig9997.21642.1|Name=mRNA_Ecto-sp13_S_contig9997.21642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1484bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9997:1946..3429- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAGCACATGGAAAGTGCTGCCACGCAGCATCCAGATGCACATCATGAA
GGAGACCGAGGACGACGCCTTCTGGGAGCGCCTCCTCAAGGTAAGTATAC
ATGAACAGCTCATCTCCGGAGATGATGTCGTCTTCTCAGAGCTACCCGAG
TTTTTTCTCGACCAAGCTATGGTGTTGCTGATAGGAAGATTGGCGAGAGA
ACGGGCCGCCGCAGCAGTGGCTCGTGTCGAGTCGCATTCTTGAAACCGTC
CATGAGGATTTCGAGCGGCCAACATCGAGGAGGACGGACGATTTGCTCAC
CCTGGACATTTATGTGGAAGCCTTTACTCTTTGGGAATGGCAGAAGGGTT
TCGACTTGGACGAGGCCGCGTCGCCTACAACAAGAAAATGTCTCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCTGTCCCTTCCTCCCTCG
CATCTCTCTCTGTATGCTTGTCTCTTCTGTCCTCCTGCCTCTCATCTTGT
CCACGCGGTGGTTGTCTCTCTCTCTCCCCCCCTGTCTCTTACACCTCTGG
TTCTGTCGCTCACTCCTTTTCTCTCTGCCGATCTGCCTCTCCCTCTACCC
CTCCCCCATAAAATGCTTCGTAGGACAAGTCCTTGGAGAAAACTAACGTG
AAGATTGACTGGAACAAGTTCGTTGACGAGGACGAGGACGAGGGCGGAGG
TTCGTGCCTGCCGCCAACCTCAAAGTCGTTCCGTTGCTGAATTTTCTCAA
GTCTCGTTCTTCTTTTGTCCGTCGGTGCTCTCTTCACGCGCGTGTTGATA
GTCTGTTTCAGAAACTATACGTTCAACCAACGACAAAATACCCGTTCAAG
ATATTACTAGATACAGCCGAAGGGGACGAGATGAAGTCTTGACAGCAGTG
AGTGGGAGAAAAACAGGCTGGATACTGGGCTTAATTGTGAGCCTATGCAA
GCCTACATAGCACTGAATTTTTTATGGGTACCAGTTTGTTTTGTGCCGTA
TTCAATTCTCGCCGAATTTTACGCGTCCGCGCCACGAGCTCTCTCTATCT
CTCTCTCTCTCTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCT
TCCCTGTTCGTTTCTGACACCCCCCGTATCGCCCTCCCTCTCCTGCGTTC
GCAATTCTGTCTCCGTGGCTGCGTGCCGAAATATATCTCGGACATCGCAG
AAGGGTTTGACATGAGTGCGCTCGACGGAGGAAGCCAATTCGGAGGCCGT
GGCGGCCCTCCGGGAGGGATGGGTGGTATGGGAGGTATGGGTGGTATGGG
GGGTATGGGAGGCATGGGAGGCATGGGGGGCATGGGAGGCATGGGAGGCA
TGGGAGGCATGGGCGGAGGTGAGGGAGGGATGCCGGCAGGAATGGCAGAG
ATGATGGCCAAGATGCAGGCGGGCGAGATGGGAGGCATGGGAGGAGGCGG
GGATGATGACGATGACGATGATGATGATGACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9997:1946..3429-

>mRNA_Ecto-sp13_S_contig9997.21642.1 ID=mRNA_Ecto-sp13_S_contig9997.21642.1|Name=mRNA_Ecto-sp13_S_contig9997.21642.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9997:1946..3429- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAGCACATGGAAAGTGCTGCCACGCAGCATCCAGATGCACATCATGAA
GGAGACCGAGGACGACGCCTTCTGGGAGCGCCTCCTCAAGGACAAGTCCT
TGGAGAAAACTAACGTGAAGATTGACTGGAACAAGTTCGTTGACGAGGAC
GAGGACGAGGGCGGAGAAGGGTTTGACATGAGTGCGCTCGACGGAGGAAG
CCAATTCGGAGGCCGTGGCGGCCCTCCGGGAGGGATGGGTGGTATGGGAG
GTATGGGTGGTATGGGGGGTATGGGAGGCATGGGAGGCATGGGGGGCATG
GGAGGCATGGGAGGCATGGGAGGCATGGGCGGAGGTGAGGGAGGGATGCC
GGCAGGAATGGCAGAGATGATGGCCAAGATGCAGGCGGGCGAGATGGGAG
GCATGGGAGGAGGCGGGGATGATGACGATGACGATGATGATGATGACGAG
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